Zfp36l2 (zinc finger protein 36, C3H type-like 2)

Gene: Zfp36l2 (zinc finger protein 36, C3H type-like 2) Rattus norvegicus

Analyze

Symbol:

Zfp36l2

Name:

zinc finger protein 36, C3H type-like 2

RGD ID:

1308913

Description:

Predicted to enable mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; hemopoiesis; and positive regulation of mRNA catabolic process. Predicted to act upstream of or within hemopoiesis and nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human ZFP36L2 (ZFP36 ring finger protein like 2); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

butyrate response factor 2; LOC100911319; LOC298765; mRNA decay activator protein ZFP36L2; zinc finger protein 36, C3H type-like 2-like; zinc finger protein 36, C3H1 type-like 2; zinc finger protein 36, C3H1 type-like 2-like

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFP36L2 (ZFP36 ring finger protein like 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp36l2 (zinc finger protein 36, C3H type-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfp36l2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFP36L2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFP36L2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfp36l2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFP36L2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFP36L2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfp36l2 (ZFP36 ring finger protein like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZFP36L2 (ZFP36 ring finger protein like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp36l2 (zinc finger protein 36, C3H type-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	zfp36l2 (zinc finger protein 36, C3H type-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CTH1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C35D6.4	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F38C2.7	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Tis11	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	Y116A8C.19	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y116A8C.20	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y60A9.3	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ccch-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	ccch-2	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ccch-5	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dct-13	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	oma-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pos-1	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TIS11	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	oma-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfp36l2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	16,242,622 - 16,246,662 (+)	NCBI		GRCr8
mRatBN7.2	6	10,490,032 - 10,494,073 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	10,490,032 - 10,494,064 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	10,779,999 - 10,784,038 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	11,089,396 - 11,093,435 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	10,606,427 - 10,610,467 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	7,417,416 - 7,423,447 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	7,417,425 - 7,421,456 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	7,357,978 - 7,362,018 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	7,530,948 - 7,534,988 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	7,532,812 - 7,534,988 (-)	NCBI
Celera	6	10,197,149 - 10,215,766 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Lynch syndrome (ISO)

Oocyte/Zygote/Embryo Maturation Arrest 13 (ISO)

Prostatic Neoplasms (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2-butoxyethanol (ISO)

2-hydroxypropanoic acid (ISO)

3',5'-cyclic AMP (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

amphotericin B (ISO)

azoxystrobin (EXP)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbamazepine (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

colforsin daropate hydrochloride (ISO)

crotonaldehyde (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diethylstilbestrol (EXP)

dioxygen (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

Ethylenethiourea (EXP,ISO)

fenamidone (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

indometacin (ISO)

irinotecan (ISO)

L-methionine (ISO)

lead diacetate (ISO)

leflunomide (ISO)

menadione (ISO)

methylmercury chloride (ISO)

N-acetyl-L-cysteine (ISO)

nickel sulfate (ISO)

orphenadrine (EXP)

paclitaxel (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

tetrachloroethene (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

torcetrapib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

troglitazone (ISO)

tungsten (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vincaleukoblastine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA destabilization (ISO)

cellular response to epidermal growth factor stimulus (ISO)

cellular response to fibroblast growth factor stimulus (ISO)

cellular response to glucocorticoid stimulus (ISO)

cellular response to granulocyte macrophage colony-stimulating factor stimulus (ISO)

cellular response to transforming growth factor beta stimulus (ISO)

cellular response to tumor necrosis factor (ISO)

definitive hemopoiesis (ISO)

ERK1 and ERK2 cascade (ISO)

hemopoiesis (ISO)

MAPK cascade (ISO)

mRNA catabolic process (ISO)

negative regulation of fat cell differentiation (ISO)

negative regulation of mitotic cell cycle phase transition (ISO)

negative regulation of stem cell differentiation (ISO)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ISO)

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ISO)

regulation of B cell differentiation (ISO)

regulation of mRNA stability (ISO)

response to wounding (ISO)

somatic stem cell division (ISO)

somatic stem cell population maintenance (ISO)

T cell differentiation in thymus (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

ribonucleoprotein complex (IEA)

Molecular Function

metal ion binding (IEA)

mRNA 3'-UTR AU-rich region binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11796723	PMID:15467755	PMID:15814898	PMID:19633199	PMID:20166898	PMID:20506496	PMID:20622884	PMID:22367205	PMID:22658674	PMID:22701344	PMID:23748442	PMID:24733888
PMID:25106868	PMID:27102483	PMID:27182009

Genomics

Comparative Map Data

Zfp36l2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	16,242,622 - 16,246,662 (+)	NCBI		GRCr8
mRatBN7.2	6	10,490,032 - 10,494,073 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	10,490,032 - 10,494,064 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	10,779,999 - 10,784,038 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	11,089,396 - 11,093,435 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	10,606,427 - 10,610,467 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	7,417,416 - 7,423,447 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	7,417,425 - 7,421,456 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	7,357,978 - 7,362,018 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	7,530,948 - 7,534,988 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	7,532,812 - 7,534,988 (-)	NCBI
Celera	6	10,197,149 - 10,215,766 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

ZFP36L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	43,222,402 - 43,226,606 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	43,222,402 - 43,226,606 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	43,449,541 - 43,453,745 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	43,304,210 - 43,307,249 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	43,362,356 - 43,365,396	NCBI
Celera	2	43,288,996 - 43,293,200 (-)	NCBI		Celera
Cytogenetic Map	2	p21	NCBI
HuRef	2	43,184,882 - 43,189,086 (-)	NCBI		HuRef
CHM1_1	2	43,378,882 - 43,383,086 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	43,227,768 - 43,231,972 (-)	NCBI		T2T-CHM13v2.0

Zfp36l2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	84,491,352 - 84,495,375 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	84,491,359 - 84,495,375 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	84,183,924 - 84,187,947 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	84,183,931 - 84,187,947 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	84,583,264 - 84,587,287 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	84,092,250 - 84,096,273 (-)	NCBI		MGSCv36	mm8
Celera	17	88,544,344 - 88,548,368 (-)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	55.02	NCBI

Zfp36l2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955441	10,467,608 - 10,469,885 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFP36L2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	83,192,058 - 83,195,492 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	83,196,112 - 83,200,304 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	43,311,744 - 43,315,928 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	44,158,249 - 44,162,346 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

ZFP36L2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	45,746,952 - 45,751,268 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	45,748,936 - 45,751,250 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	45,608,345 - 45,612,636 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	46,623,672 - 46,627,990 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	46,625,667 - 46,627,993 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	46,332,590 - 46,336,883 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	46,623,322 - 46,627,613 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,805,859 - 46,810,167 (-)	NCBI		UU_Cfam_GSD_1.0

Zfp36l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	37,188,551 - 37,192,821 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936508	8,617,100 - 8,621,495 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936508	8,617,185 - 8,620,823 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFP36L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	97,200,407 - 97,204,698 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	97,200,395 - 97,203,094 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	103,259,048 - 103,263,356 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFP36L2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	64,019,633 - 64,022,301 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	64,019,418 - 64,026,281 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	47,878,327 - 47,882,579 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfp36l2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	24,744,213 - 24,747,591 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	24,743,388 - 24,747,572 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp36l2
24 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	646
Count of miRNA genes:	297
Interacting mature miRNAs:	388
Transcripts:	ENSRNOT00000006725
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	5074497	19988050	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	9843312	20338915	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	9843312	20338915	Rat

Markers in Region

D2S2709

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	10,493,917 - 10,494,064 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	7,417,425 - 7,417,571	NCBI	Rnor6.0
Rnor_6.0	7	2,350,077 - 2,350,223	NCBI	Rnor6.0
Rnor_5.0	6	7,357,987 - 7,358,133	UniSTS	Rnor5.0
Rnor_5.0	7	2,327,993 - 2,328,139	UniSTS	Rnor5.0
RGSC_v3.4	6	7,530,957 - 7,531,103	UniSTS	RGSC3.4
Celera	6	10,202,798 - 10,202,944	UniSTS
Cytogenetic Map	6	q12	UniSTS

RH141450

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	10,492,607 - 10,492,792 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	2,351,348 - 2,351,532	NCBI	Rnor6.0
Rnor_6.0	6	7,418,696 - 7,418,880	NCBI	Rnor6.0
Rnor_5.0	6	7,359,258 - 7,359,442	UniSTS	Rnor5.0
Rnor_5.0	7	2,329,264 - 2,329,448	UniSTS	Rnor5.0
RGSC_v3.4	6	7,532,228 - 7,532,412	UniSTS	RGSC3.4
Celera	6	10,201,489 - 10,201,673	UniSTS
Cytogenetic Map	6	q12	UniSTS

AW434453

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	2,329,946 - 2,330,138	NCBI	Rnor5.0
Rnor_5.0	6	7,359,940 - 7,360,132	NCBI	Rnor5.0
RGSC_v3.4	6	7,532,911 - 7,533,102	UniSTS	RGSC3.4
RGSC_v3.4	7	1,054,326 - 1,054,516	UniSTS	RGSC3.4
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	6	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	31	22	18	22			64	30	33	11
Low		9	26	19	1	19	8	11	10	5	8		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001036626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV112816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000006725 ⟹ ENSRNOP00000006725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	10,490,032 - 10,494,064 (+)	Ensembl
Rnor_6.0 Ensembl	6	7,417,425 - 7,421,456 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000074873 ⟹ ENSRNOP00000066942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	2,351,933 - 2,353,875 (-)	Ensembl

RefSeq Acc Id:

NM_001036626 ⟹ NP_001031703

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	16,242,622 - 16,246,662 (+)	NCBI
mRatBN7.2	6	10,490,032 - 10,494,073 (+)	NCBI
Rnor_6.0	6	7,417,416 - 7,421,456 (-)	NCBI
Rnor_5.0	6	7,357,978 - 7,362,018 (-)	NCBI
RGSC_v3.4	6	7,530,948 - 7,534,988 (-)	RGD

Sequence:

show sequence

TCCGCGAGCTGCCGACGGCTCGCGCGGGGGGCAGGCCGGGGCGCCGAGCTGCGCTCTCGCTTCT
CCTCTGCCCCCCACTCCGCGCGCCGCGGCCTCCTTCCTCGGCCCCGCAAGCAAACTTTCCGTCC
CTCCCTGCCCCTCGTCCGTTATTCGTCTTGGTTTGAGCTGCGCCGCACCGAGGGCTCCTCCCAA
CCTCCCCGCTTGCAGTTCCGACCATTACAGGACCCAGAAAAATGTCGACCACTCTTCTGTCAGC
TTTCTACGATATCGACTTCTTGTGCAAGACGGAGAAATCCCTGGCAAACCTCAATCTGAACAAC
ATGCTGGACAAGAAGGCGGTGGGGACGCCCGTGGCTGCTGCCCCCAGCTCGAGCTTCACTCCGG
GGTTCCTGAGACGCCACTCCGCCAGCAACCTACACGCGCTCGCCCACCCCAGTCCTGGCAGCTG
CTCGCCTAAGTTCCCAGGCGCCCCTAACGGCAGCAGCTGTGGCCCGGCAGGCGCGGGCGGCCCG
TCCTCCTACGGCCAGCTCAAGGAGCCTTCAGGGGGCAGCGGCACGGCGCTGGTCAACAAGGAAA
GCAAATTCCGGGATCGCTCTTTCAGCGAGAACGGTGAGCGCAGCCAGCACCTCCTGCACCTGCA
GCAGCAGCAGAAGGGGGGCAGCGGCTCCCAAATCAACTCCACGCGCTACAAGACCGAGCTGTGC
CGGCCCTTCGAGGAGAGCGGCACGTGCAAGTACGGCGAGAAGTGCCAGTTCGCGCACGGCTTCC
ATGAGCTGCGCAGCCTCACTCGGCACCCCAAGTACAAGACGGAGCTGTGCCGCACCTTCCACAC
CATCGGCTTCTGCCCCTACGGCCCGCGCTGCCATTTCATCCACAACGCAGACGAGCGGCGGCCC
GCACCATCGGGGGGCGCCTCCGGGGACCTGCGAGCGTTTGGCGCGCGCGACGCGCTGCACCTGG
GCTTTGCCCGGGAGCCGCGGCCAAAGCTGCACCACAGCCTCAGTTTCTCCGGCTTCCCGTCGGG
CCACCACCAGCCGCCCGGGGGACTGGAGTCGCCGCTGCTGCTCGACAGCCCCACGTCGCGCACG
CCGCCGCCGCCCTCCTGTTCCTCCGCCTCGTCCTGTTCCTCATCAGCCTCTTCCTGCTCCTCCA
CCTCAGCGGCCTCCACACCCTCGGGCGCCCCGACGTGCTGTGCCTCAGCGGCGGCGGCGGCGGC
GGCCGCGCTGCTCTACGGCCCCGGAGGCGCGGAGGACCTGCTGACTCCCGGAGCGCCGTGCGCC
ACTTGCTCGACCACCTCGTGCGCCAACAACGCCTTCACCTTCGGCCCGGAGGTGAGCAGCCTCA
TCACGCCACTTGCCATCCAGACCCACAACTTCGCCGCCGCGGCCGCCGCCTACTACCGCAGCCA
GCAGCAGGGCCTGGCGGGCCTCGCGCCGGCCCCTGCGCAGCCCCCCGCGGCCCCCGCGCCGCCC
TCGCCGCCCTTCGGCTTCCAGCTGCCGCGCCGTCTGTCCGAGTCGCCGGTGTTCGACGCGCCCC
CCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGTTACCTGAGTGGCTCGCTGAGCTCGGGCAG
CCTCAGCGGCTCCGAGTCCCCCAGCCTGGACCCCGGCCGCCGCCTGCCCATCTTCAGCCGCCTC
TCCATCTCCGACGACTGAGGCAAGGGGGCGCCCGCGAGGGGTTGGGAGAGGCGTTACAGGGGCA
CCGGTTGGGGGGTGACACTGCCGCAGGCCGACTTTAAGGCCCCTCCGAGCACTTGGACTCGAAC
TCTGCCGGGAGGGGCCCTGCCCCTTCCCTTTCGGTTTTCTCGTTTCGTTCTTTTTTTTTATTTT
ATTATTAATATTATTATTATTATTATTGCAAAGTTTCGTTCTTGTTGAAATAAAAGCCAACGAA
CTTTTCGAATGGATGAACAAAATATCCACAACAGGGCGGTTGTGATGCAGAAAGAACAAAGGAT
ACCAAACACTTGCTTTAGGTCCCAGAAGAGTTTGAAACTCTAGTTTTAAAAGAAAAAAATAAAA
ATCAGCCCATCACCAGCAGCTACCAACCATCATTCCATCTCTTCACTGGAAAGCCTTAGCTACA
GATGTGAGAACTCTGACCTTGGAAGGGGTTCCAAGACCAGTGTGAGCCCGCCGGCTGCCACCTC
CCTAAAGTATAAGCTTCTAGAATTCAAACTAATGCCAAGAACATGCCTTGGTAGGAGTAGCTCT
CTGCCTCCTTCCTGGTGGTTGTTTACCTTGTTTATGTTTTTTAACAAAGTTCTATGTGTCTGGG
GGTGGGGGAGCCCTTGCATTCCAAAGTTTGGTAACAGTCTCCTTGCCAGCACTCAGTGGGTGTT
TAGCTTAGAACCATTTCCTCTGCCCTCTGGAAGCCTTGGGCAGAGCTCAGTTCATAGTTGGGAA
ATAAGTGCTTCATTTTTAGCTGTTTTGAGTTGATCCGCACCACTGCACCACAACTCAATATGAA
AAACTATTTAACTTATTTATTATTCTTGTGAAAAGTATACATTTGAGGATGTTGTTCATACTGT
ATTTATCGAGTATGATGAAAGCAATAGATATATATTCTTTTATTATGTTAAATTATAATTGCCA
TTATTAATCGGCAAAACGTGGAGTGTGTTCTTTTCACAGTAATATATGCCTTTTGTAACTTCAC
TTGGGTTATTTTATTGTAAATGAGTAAGAAAAATCTTAATTTAAGAGATTGTATGTAATATTTA
TTTCATTAATTTCTTTCCTTGTTTACGTAAATTTCGGAAGATTGCATGGTTTCTTTACAGAAAT
CTATCTTGATGCTGTGGAAGTAGTTTGAGGAACATTTTGAGTTTTTTTAGAATGCATAATGGTT
GTAGCCCATCCGACTTTAAAGAGGAAAAGAATGCCCAGAGACTCTGCAGTCAGACTCACGTGGC
ATGCTATAAACCAGCAAGGAAAGGACAGTTTCCTAGTTCCACCAGCTCTACTGTGACATTGAGT
ATAAAGACATGTAGCAATAATGGGGGGGGGGGGGTCTCAGTGCCTTCACAGGGCCCGAACTTGC
CTTAAATCTTCCTCAGCCAAATAAGTATTCCATTAGTGCTTGAGAATTTGAATGTGGGATGGGT
TCGCCTGCACAAGAGGAAAAGAATTTTACCACTTTTTTTTTTAACCATAGCTATGATGTGAAGA
GGCCAGGTCTTCACGCTGAATTGTTGGTGGTACACGAATATACCTTGCTTAATGACAGTCCAGA
ACTTGTACTATTATTTTTCATTGTAAAGAGGCAGGAAAGTCTCCCGGCTTTGCCGGATGACAAA
TGAATGATCAGCCGCTTAGTTTGTGCCGTAGGTACAGTTGGAGCACCACGAGTGCACTCTGGAC
TACTTTGACAGAAGTAGGTTTTTGAATGTAACGAGATAAGTCAACTTGAGTTGTAATATATTTT
GGGGAATCAGTTCACTACAAATTGTGACTGTAAACATTGTACTGTAAATGTTTTGTAGTTTTCC
CCCAATAAAATTTTTTGGAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008765049 ⟹ XP_008763271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	16,242,767 - 16,246,662 (+)	NCBI
mRatBN7.2	6	10,490,176 - 10,494,073 (+)	NCBI

Sequence:

show sequence

GCTGCCGACGGCTCGCGCGGGGGGCAGGCCGGGGCGCCGAGCTGCGCTCTCGCTTCTCCTCTGC
CCCCCACTCCGCGCGCCGCGGCCTCCTTCCTCGGCCCCGCAAGCAAACTTTCCGTCCCTCCCTG
CCCCTCGTCCGTTATTCGTCTTGGTTTGAGCTGCGCCGCACCGAGGGCTCCTCCCAACCTCCCC
GCTTGCAGTTCCGACCATTACAGGACCCAGAAAAATGTCGACCACTCTTCTGTCAGCTTTCTAC
GATATCGACTTCTTGTGCAAGATTTTCATCCCGTCCCCGGTCCCCTCCCTTTGGCAGACGGAGA
AATCCCTGGCAAACCTCAATCTGAACAACATGCTGGACAAGAAGGCGGTGGGGACGCCCGTGGC
TGCTGCCCCCAGCTCGAGCTTCACTCCGGGGTTCCTGAGACGCCACTCCGCCAGCAACCTACAC
GCGCTCGCCCACCCCAGTCCTGGCAGCTGCTCGCCTAAGTTCCCAGGCGCCCCTAACGGCAGCA
GCTGTGGCCCGGCAGGCGCGGGCGGCCCGTCCTCCTACGGCCAGCTCAAGGAGCCTTCAGGGGG
CAGCGGCACGGCGCTGGTCAACAAGGAAAGCAAATTCCGGGATCGCTCTTTCAGCGAGAACGGT
GAGCGCAGCCAGCACCTCCTGCACCTGCAGCAGCAGCAGAAGGGGGGCAGCGGCTCCCAAATCA
ACTCCACGCGCTACAAGACCGAGCTGTGCCGGCCCTTCGAGGAGAGCGGCACGTGCAAGTACGG
CGAGAAGTGCCAGTTCGCGCACGGCTTCCATGAGCTGCGCAGCCTCACTCGGCACCCCAAGTAC
AAGACGGAGCTGTGCCGCACCTTCCACACCATCGGCTTCTGCCCCTACGGCCCGCGCTGCCATT
TCATCCACAACGCAGACGAGCGGCGGCCCGCACCATCGGGGGGCGCCTCCGGGGACCTGCGAGC
GTTTGGCGCGCGCGACGCGCTGCACCTGGGCTTTGCCCGGGAGCCGCGGCCAAAGCTGCACCAC
AGCCTCAGTTTCTCCGGCTTCCCGTCGGGCCACCACCAGCCGCCCGGGGGACTGGAGTCGCCGC
TGCTGCTCGACAGCCCCACGTCGCGCACGCCGCCGCCGCCCTCCTGTTCCTCCGCCTCGTCCTG
TTCCTCATCAGCCTCTTCCTGCTCCTCCACCTCAGCGGCCTCCACACCCTCGGGCGCCCCGACG
TGCTGTGCCTCAGCGGCGGCGGCGGCGGCGGCCGCGCTGCTCTACGGCCCCGGAGGCGCGGAGG
ACCTGCTGACTCCCGGAGCGCCGTGCGCCACTTGCTCGACCACCTCGTGCGCCAACAACGCCTT
CACCTTCGGCCCGGAGCTGAGCAGCCTCATCACGCCACTTGCCATCCAGACCCACAACTTCGCC
GCCGCGGCCGCCGCCTACTACCGCAGCCAGCAGCAGGGCCTGGCGGGCCTCGCGCCGGCCCCTG
CGCAGCCCCCCGCGGCCCCCGCGCCGCCCTCGCCGCCCTTCGGCTTCCAGCTGCCGCGCCGTCT
GTCCGAGTCGCCGGTGTTCGACGCGCCCCCCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGT
TACCTGAGTGGCTCGCTGAGCTCGGGCAGCCTCAGCGGCTCCGAGTCCCCCAGCCTGGACCCCG
GCCGCCGCCTGCCCATCTTCAGCCGCCTCTCCATCTCCGACGACTGAGGCAAGGGGGCGCCCGC
GAGGGGTTGGGAGAGGCGTTACAGGGGCACCGGTTGGGGGGTGACACTGCCGCAGGCCGACTTT
AAGGCCCCTCCGAGCACTTGGACTCGAACTCTGCCGGGAGGGGCCCTGCCCCTTCCCTTTCGGT
TTTCTCGTTTCGTTCTTTTTTTTTATTTTATTATTAATATTATTATTATTATTATTGCAAAGTT
TCGTTCTTGTTGAAATAAAAGCCAACGAACTTTTCGAATGGATGAACAAAATATCCACAACAGG
GCGGTTGTGATGCAGAAAGAACAAAGGATACCAAACACTTGCTTTAGGTCCCAGAAGAGTTTGA
AACTCTAGTTTTAAAAGAAAAAAATAAAAATCAGCCCATCACCAGCAGCTACCAACCATCATTC
CATCTCTTCACTGGAAAGCCTTAGCTACAGATGTGAGAACTCTGACCTTGGAAGGGGTTCCAAG
ACCAGTGTGAGCCCGCCGGCTGCCACCTCCCTAAAGTATAAGCTTCTAGAATTCAAACTAATGC
CAAGAACATGCCTTGGTAGGAGTAGCTCTCTGCCTCCTTCCTGGTGGTTGTTTACCTTGTTTAT
GTTTTTTAACAAAGTTCTATGTGTCTGGGGGTGGGGGAGCCCTTGCATTCCAAAGTTTGGTAAC
AGTCTCCTTGCCAGCACTCAGTGGGTGTTTAGCTTAGAACCATTTCCTCTGCCCTCTGGAAGCC
TTGGGCAGAGCTCAGTTCATAGTTGGGAAATAAGTGCTTCATTTTTAGCTGTTTTGAGTTGATC
CGCACCACTGCACCACAACTCAATATGAAAAACTATTTAACTTATTTATTATTCTTGTGAAAAG
TATACATTTGAGGATGTTGTTCATACTGTATTTATCGAGTATGATGAAAGCAATAGATATATAT
TCTTTTATTATGTTAAATTATAATTGCCATTATTAATCGGCAAAACGTGGAGTGTGTTCTTTTC
ACAGTAATATATGCCTTTTGTAACTTCACTTGGGTTATTTTATTGTAAATGAGTAAGAAAAATC
TTAATTTAAGAGATTGTATGTAATATTTATTTCATTAATTTCTTTCCTTGTTTACGTAAATTTC
GGAAGATTGCATGGTTTCTTTACAGAAATCTATCTTGATGCTGTGGAAGTAGTTTGAGGAACAT
TTTGAGTTTTTTTAGAATGCATAATGGTTGTAGCCCATCCGACTTTAAAGAGGAAAAGAATGCC
CAGAGACTCTGCAGTCAGACTCACGTGGCATGCTATAAACCAGCAAGGAAAGGACAGTTTCCTA
GTTCCACCAGCTCTACTGTGACATTGAGTATAAAGACATGTAGCAATAATGGGGGGGGGGGGGT
CTCAGTGCCTTCACAGGGCCCGAACTTGCCTTAAATCTTCCTCAGCCAAATAAGTATTCCATTA
GTGCTTGAGAATTTGAATGTGGGATGGGTTCGCCTGCACAAGAGGAAAAGAATTTTACCACTTT
TTTTTTTAACCATAGCTATGATGTGAAGAGGCCAGGTCTTCACGCTGAATTGTTGGTGGTACAC
GAATATACCTTGCTTAATGACAGTCCAGAACTTGTACTATTATTTTTCATTGTAAAGAGGCAGG
AAAGTCTCCCGGCTTTGCCGGATGACAAATGAATGATCAGCCGCTTAGTTTGTGCCGTAGGTAC
AGTTGGAGCACCACGAGTGCACTCTGGACTACTTTGACAGAAGTAGGTTTTTGAATGTAACGAG
ATAAGTCAACTTGAGTTGTAATATATTTTGGGGAATCAGTTCACTACAAATTGTGACTGTAAAC
ATTGTACTGTAAATGTTTTGTAGTTTTCCCCCAATAAAATTTTTTGGAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001031703	(Get FASTA)	NCBI Sequence Viewer
	XP_008763271	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02702	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006725
	ENSRNOP00000006725.5

RefSeq Acc Id:

NP_001031703 ⟸ NM_001036626

- UniProtKB:

D3ZHK9 (UniProtKB/TrEMBL), A6H9J7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTTLLSAFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSSFTPGFLRRHSASNLHAL
AHPSPGSCSPKFPGAPNGSSCGPAGAGGPSSYGQLKEPSGGSGTALVNKESKFRDRSFSENGER
SQHLLHLQQQQKGGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKT
ELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGARDALHLGFAREPRPKLHHSL
SFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSTSAASTPSGAPTCC
ASAAAAAAAALLYGPGGAEDLLTPGAPCATCSTTSCANNAFTFGPEVSSLITPLAIQTHNFAAA
AAAYYRSQQQGLAGLAPAPAQPPAAPAPPSPPFGFQLPRRLSESPVFDAPPSPPDSLSDRDSYL
SGSLSSGSLSGSESPSLDPGRRLPIFSRLSISDD

hide sequence

RefSeq Acc Id:

ENSRNOP00000006725 ⟸ ENSRNOT00000006725

RefSeq Acc Id:	XP_008763271 ⟸ XM_008765049
- Peptide Label:	isoform X1
- UniProtKB:	A6H9J7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTTLLSAFYDIDFLCKIFIPSPVPSLWQTEKSLANLNLNNMLDKKAVGTPVAAAPSSSFTPGF LRRHSASNLHALAHPSPGSCSPKFPGAPNGSSCGPAGAGGPSSYGQLKEPSGGSGTALVNKESK FRDRSFSENGERSQHLLHLQQQQKGGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHE LRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGARDALHLGF AREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSTS AASTPSGAPTCCASAAAAAAAALLYGPGGAEDLLTPGAPCATCSTTSCANNAFTFGPELSSLIT PLAIQTHNFAAAAAAYYRSQQQGLAGLAPAPAQPPAAPAPPSPPFGFQLPRRLSESPVFDAPPS PPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFSRLSISDD hide sequence

RefSeq Acc Id:

ENSRNOP00000066942 ⟸ ENSRNOT00000074873

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHK9-F1-model_v2	AlphaFold	D3ZHK9	1-482	view protein structure
AF-M0RBK3-F1-model_v2	AlphaFold	M0RBK3	1-482	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694372

Promoter ID:

EPDNEW_R4897

Type:

multiple initiation site

Name:

Zfp36l2_1

Description:

zinc finger protein 36, C3H type-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	7,421,466 - 7,421,526	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308913	AgrOrtholog
BioCyc Gene	G2FUF-38635	BioCyc
Ensembl Genes	ENSRNOG00000005067	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000050108	Ensembl
Ensembl Transcript	ENSRNOT00000006725	ENTREZGENE
	ENSRNOT00000006725.6	UniProtKB/TrEMBL
Gene3D-CATH	Zinc finger, CCCH-type	UniProtKB/TrEMBL
InterPro	Tis11B_N	UniProtKB/TrEMBL
	ZFP36-like	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
NCBI Gene	298765	ENTREZGENE
PANTHER	MRNA DECAY ACTIVATOR PROTEIN ZFP36L2	UniProtKB/TrEMBL
	PTHR12547	UniProtKB/TrEMBL
Pfam	Tis11B_N	UniProtKB/TrEMBL
	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Zfp36l2	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005067	RatGTEx
	ENSRNOG00000050108	RatGTEx
SMART	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90229	UniProtKB/TrEMBL
UniProt	A6H9J7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHK9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zfp36l2	zinc finger protein 36, C3H type-like 2	LOC100911319	zinc finger protein 36, C3H1 type-like 2-like	Data merged from RGD:6493373	737654	PROVISIONAL
2013-05-24	Zfp36l2	zinc finger protein 36, C3H type-like 2	LOC100363714	zinc finger protein 36, C3H type-like 2-like	Data merged from RGD:2322437	1643240	APPROVED
2012-07-05	LOC100911319	zinc finger protein 36, C3H1 type-like 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-06	LOC100363714	zinc finger protein 36, C3H type-like 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Zfp36l2	zinc finger protein 36, C3H type-like 2	Zfp36l2_predicted	zinc finger protein 36, C3H type-like 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp36l2_predicted	zinc finger protein 36, C3H type-like 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM