Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | irritant dermatitis | | ISO | TRIM31 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27258892 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | irritant dermatitis | | ISO | TRIM31 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27258892 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Trim31 (Rattus norvegicus - Norway rat) |
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TRIM31 (Homo sapiens - human) |
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Trim31 (Mus musculus - house mouse) |
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TRIM31 (Pan paniscus - bonobo/pygmy chimpanzee) |
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Trim31 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TRIM31 (Sus scrofa - pig) |
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Variants in Trim31
229 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D20Rat1 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | ||||||||||||
Low | 8 | 41 | 25 | 19 | 25 | 8 | 8 | 11 | 21 | 11 | 11 | 8 | |
Below cutoff | 15 | 10 | 10 | 10 | 3 | 4 | 8 | 12 |
RefSeq Transcripts | NM_001106376 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008772691 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC108572 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BX883051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474093 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000061558 ⟹ ENSRNOP00000058275 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001106376 ⟹ NP_001099846 | ||||||||||||||||||||||||||||
RefSeq Status: | INFERRED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001099846 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | EDL84606 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000058275 | ||
ENSRNOP00000058275.3 |
RefSeq Acc Id: | NP_001099846 ⟸ NM_001106376 |
- UniProtKB: | D3ZN56 (UniProtKB/TrEMBL), A6KR83 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000058275 ⟸ ENSRNOT00000061558 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZN56-F1-model_v2 | AlphaFold | D3ZN56 | 1-507 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701275 | ||||||||
Promoter ID: | EPDNEW_R11799 | ||||||||
Type: | initiation region | ||||||||
Name: | Trim31_1 | ||||||||
Description: | tripartite motif-containing 31 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1308607 | AgrOrtholog |
BioCyc Gene | G2FUF-4974 | BioCyc |
Ensembl Genes | ENSRNOG00000021518 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000061558 | ENTREZGENE |
ENSRNOT00000061558.5 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.60.120.920 | UniProtKB/TrEMBL |
3.30.40.10 | UniProtKB/TrEMBL | |
Classic Zinc Finger | UniProtKB/TrEMBL | |
InterPro | B30.2/SPRY_sf | UniProtKB/TrEMBL |
B302 | UniProtKB/TrEMBL | |
Butyrophylin | UniProtKB/TrEMBL | |
ConA-like_dom | UniProtKB/TrEMBL | |
PRY | UniProtKB/TrEMBL | |
SPRY_rcpt | UniProtKB/TrEMBL | |
Znf_B-box | UniProtKB/TrEMBL | |
Znf_RING | UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/TrEMBL | |
Znf_RING_CS | UniProtKB/TrEMBL | |
KEGG Report | rno:294208 | UniProtKB/TrEMBL |
NCBI Gene | 294208 | ENTREZGENE |
PANTHER | E3 UBIQUITIN-PROTEIN LIGASE TRIM | UniProtKB/TrEMBL |
E3 UBIQUITIN-PROTEIN LIGASE TRIM31 | UniProtKB/TrEMBL | |
Pfam | SPRY | UniProtKB/TrEMBL |
zf-B_box | UniProtKB/TrEMBL | |
zf-C3HC4_4 | UniProtKB/TrEMBL | |
PhenoGen | Trim31 | PhenoGen |
PRINTS | BUTYPHLNCDUF | UniProtKB/TrEMBL |
PROSITE | B302_SPRY | UniProtKB/TrEMBL |
ZF_BBOX | UniProtKB/TrEMBL | |
ZF_RING_1 | UniProtKB/TrEMBL | |
ZF_RING_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000021518 | RatGTEx |
SMART | BBOX | UniProtKB/TrEMBL |
PRY | UniProtKB/TrEMBL | |
RING | UniProtKB/TrEMBL | |
SPRY | UniProtKB/TrEMBL | |
Superfamily-SCOP | B-box zinc-binding domain | UniProtKB/TrEMBL |
ConA_like_lec_gl | UniProtKB/TrEMBL | |
RING/U-box | UniProtKB/TrEMBL | |
UniProt | A6KR83 | ENTREZGENE, UniProtKB/TrEMBL |
D3ZN56 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-03-31 | Trim31 | tripartite motif-containing 31 | Trim31_predicted | tripartite motif protein 31 (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-30 | Trim31_predicted | tripartite motif protein 31 (predicted) | tripartite motif-containing 31 (predicted) | Name updated | 1299863 | APPROVED | |
2005-01-12 | Trim31_predicted | tripartite motif-containing 31 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |