Kif23 (kinesin family member 23) - Rat Genome Database

Name: Kif23
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Kif23 (kinesin family member 23) Rattus norvegicus

Analyze

Symbol:

Kif23

Name:

kinesin family member 23

RGD ID:

1308596

Description:

Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in several processes, including mitotic cytokinesis; mitotic spindle midzone assembly; and positive regulation of cytokinesis. Predicted to be located in several cellular components, including Flemming body; intercellular bridge; and microtubule cytoskeleton. Predicted to be part of centralspindlin complex and kinesin complex. Predicted to be active in microtubule and nucleus. Human ortholog(s) of this gene implicated in congenital dyserythropoietic anemia type III. Orthologous to human KIF23 (kinesin family member 23); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

kinesin-like protein KIF23; LOC315740

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIF23 (kinesin family member 23)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Kif23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kif23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIF23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIF23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kif23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIF23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIF23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kif23 (kinesin family member 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	C6orf58 (chromosome 6 open reading frame 58)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	KIF23 (kinesin family member 23)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kif23 (kinesin family member 23)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kif23 (kinesin family member 23)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	pav	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	zen-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kif23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	71,293,439 - 71,321,911 (-)	NCBI		GRCr8
mRatBN7.2	8	62,397,908 - 62,425,162 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	62,397,948 - 62,425,072 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	67,912,383 - 67,939,519 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	66,184,895 - 66,212,039 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	64,054,823 - 64,081,963 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	66,866,043 - 66,893,241 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	66,866,082 - 66,893,196 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	66,598,467 - 66,625,560 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	66,050,163 - 66,077,265 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	66,069,216 - 66,096,375 (-)	NCBI
Celera	8	61,817,735 - 61,844,819 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

congenital dyserythropoietic anemia (ISO)

congenital dyserythropoietic anemia type III (ISO)

COVID-19 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

microcephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2-butoxyethanol (ISO)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3,7-dihydropurine-6-thione (EXP)

3-methylcholanthrene (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

calcitriol (ISO)

captan (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

CHIR 99021 (ISO)

chlorpyrifos (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deguelin (ISO)

diallyl trisulfide (ISO)

dicrotophos (ISO)

dioxygen (EXP)

diuron (EXP)

doxorubicin (ISO)

Echimidine (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

erythromycin estolate (EXP)

etoposide (ISO)

eugenol (ISO)

folpet (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gallic acid (ISO)

genistein (ISO)

geraniol (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

L-ascorbic acid (ISO)

Lasiocarpine (ISO)

lead diacetate (ISO)

leflunomide (ISO)

lithium atom (EXP)

lithium hydride (EXP)

lucanthone (ISO)

menadione (ISO)

mercaptopurine (EXP)

methotrexate (ISO)

mitomycin C (ISO)

monocrotaline (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

phenethyl isothiocyanate (ISO)

phenformin (EXP)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

pravastatin (EXP,ISO)

propanal (ISO)

purine-6-thiol (EXP)

quercetin (ISO)

resveratrol (ISO)

riboflavin (ISO)

riddelliine (ISO)

rotenone (EXP,ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tebufenpyrad (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

XAV939 (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

microtubule-based movement (IBA)

mitotic cytokinesis (ISO)

mitotic spindle midzone assembly (IBA,ISO)

positive regulation of cytokinesis (ISO)

Cellular Component

centralspindlin complex (ISO)

centrosome (ISO)

cytoplasm (IEA)

Flemming body (IEA,ISO)

intercellular bridge (ISO)

kinesin complex (IBA)

microtubule (IBA)

midbody (ISO)

mitotic spindle (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

spindle (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IBA)

microtubule binding (IBA,ISO)

microtubule motor activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11782313	PMID:15197175	PMID:15843429	PMID:16103226	PMID:16236794	PMID:20186884	PMID:21423176

Genomics

Comparative Map Data

Kif23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	71,293,439 - 71,321,911 (-)	NCBI		GRCr8
mRatBN7.2	8	62,397,908 - 62,425,162 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	62,397,948 - 62,425,072 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	67,912,383 - 67,939,519 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	66,184,895 - 66,212,039 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	64,054,823 - 64,081,963 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	66,866,043 - 66,893,241 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	66,866,082 - 66,893,196 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	66,598,467 - 66,625,560 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	66,050,163 - 66,077,265 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	66,069,216 - 66,096,375 (-)	NCBI
Celera	8	61,817,735 - 61,844,819 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

KIF23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	69,414,349 - 69,448,427 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	69,414,246 - 69,448,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	69,706,688 - 69,740,766 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	67,493,742 - 67,527,818 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	67,493,741 - 67,527,817	NCBI
Celera	15	46,595,477 - 46,629,554 (+)	NCBI		Celera
Cytogenetic Map	15	q23	NCBI
HuRef	15	46,539,544 - 46,573,728 (+)	NCBI		HuRef
CHM1_1	15	69,824,574 - 69,858,736 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	67,236,426 - 67,270,507 (+)	NCBI		T2T-CHM13v2.0

Kif23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	61,824,559 - 61,854,078 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	61,823,187 - 61,854,056 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	61,917,277 - 61,946,810 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	61,915,905 - 61,946,774 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	61,765,084 - 61,794,606 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	61,715,488 - 61,744,763 (-)	NCBI		MGSCv36	mm8
Celera	9	59,140,028 - 59,171,469 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	33.5	NCBI

Kif23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	7,060,823 - 7,082,169 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	7,060,240 - 7,083,818 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIF23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	58,678,743 - 58,712,953 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	62,842,790 - 62,877,001 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	48,364,891 - 48,399,038 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	67,135,401 - 67,169,531 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	67,135,401 - 67,169,531 (+)	Ensembl	panpan1.1		panPan2

KIF23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	33,313,029 - 33,337,663 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	33,302,709 - 33,337,422 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	33,243,874 - 33,269,960 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	33,509,681 - 33,535,782 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	33,509,538 - 33,535,782 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	33,435,342 - 33,461,424 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	33,496,792 - 33,522,891 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	33,744,896 - 33,770,983 (+)	NCBI		UU_Cfam_GSD_1.0

Kif23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	111,302,045 - 111,329,852 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	29,150,205 - 29,177,769 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	29,154,618 - 29,177,865 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	167,239,997 - 167,281,245 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	167,239,973 - 167,281,250 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	185,281,453 - 185,303,428 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	14,008,717 - 14,044,272 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	14,008,633 - 14,043,710 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	127,439,332 - 127,474,619 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kif23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	4,048,902 - 4,073,257 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	4,048,997 - 4,074,836 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Kif23
163 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	324
Count of miRNA genes:	201
Interacting mature miRNAs:	239
Transcripts:	ENSRNOT00000037028
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat

Markers in Region

RH139607

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	62,398,045 - 62,398,253 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	66,866,181 - 66,866,388	NCBI	Rnor6.0
Rnor_5.0	8	66,598,562 - 66,598,769	UniSTS	Rnor5.0
RGSC_v3.4	8	66,050,258 - 66,050,465	UniSTS	RGSC3.4
Celera	8	61,817,830 - 61,818,037	UniSTS
RH 3.4 Map	8	770.1	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	30	22	17	22			41	21	35	7
Low		16	21	13	2	13	4	5	33	14	6	4	4
Below cutoff		1	6	6		6	4	6					4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000037028 ⟹ ENSRNOP00000033647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	62,399,702 - 62,424,006 (-)	Ensembl
Rnor_6.0 Ensembl	8	66,866,457 - 66,893,083 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091755 ⟹ ENSRNOP00000074399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	62,397,948 - 62,425,054 (-)	Ensembl
Rnor_6.0 Ensembl	8	66,866,082 - 66,893,196 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100547 ⟹ ENSRNOP00000083679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	62,397,955 - 62,425,072 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111055 ⟹ ENSRNOP00000080806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	62,397,948 - 62,425,069 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112104 ⟹ ENSRNOP00000091527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	62,397,948 - 62,425,069 (-)	Ensembl

RefSeq Acc Id:

NM_001108155 ⟹ NP_001101625

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,482 - 71,320,584 (-)	NCBI
mRatBN7.2	8	62,397,951 - 62,425,053 (-)	NCBI
Rnor_6.0	8	66,866,086 - 66,893,179 (-)	NCBI
Rnor_5.0	8	66,598,467 - 66,625,560 (-)	NCBI
RGSC_v3.4	8	66,050,163 - 66,077,265 (-)	RGD
Celera	8	61,817,735 - 61,844,819 (-)	RGD

Sequence:

show sequence

GCGGCCGCAGCCTCCACGGCTTAGTTCCCGCCAGCCCTGCTCCGGTCGGAGCCCGACGTCCCGC
GCGCGCGTCAGGACAGCACGGAGACTGCGGTCATGAAGTCGGCGAAGGCTAAGATGCCCAGGAA
ACCTGTAATAAAAAAAGGATCTCAGACAAACCTTAAAGATCCAGTGGGGGTGTACTGTAGGGTG
CGCCCACTGAGCTTTCCTGACCAAGAGTGCTGTGTGGAAGTGGTCAATAGTACAACCGTGCAGC
TCCACACCCCTGAGGGCTATCGACTCAACAGAAATGGAGACTACAAGGAGACTCAGTACTCATT
TAAGCGGGTATTTGGCACGCACACCACCCAGAAGGAGCTTTTTGATGTTGTGGCTAGTCCCTTG
GTAGATGACCTCATTCATGGCAAGAATGGTCTTTTATTTACATATGGTGTGACGGGAAGTGGAA
AAACCTACACAATGACAGGGTCTCCAGGGTCCGGAGGCCTGCTTCCTCGTTGTTTGAATATGAT
CTTTAACAGCATAGGGTCATTTCAAGCAAAACGTTTCGTGTTTAAGTCTAATGATAGGAACAGT
ATGGAAATACAGTGTGAAGTCGATGCCTTGTTAGAACGGCAGAAAAGAGAAGCCATGCCCATTC
CAAAGACCCCCTCTAGCAAGCGACAAGCAGATCCAGAGTTTGCAGATATGATAAATGTACAAGA
ATTCTGCAAAGCAGAAGAAGTTGATGAAGACAGTGTCTATGGAGTGTTTGTCTCTTACATTGAA
ATCTATAATAATTACCTATATGATCTATTGGAAGAAGTGCAGTTTGATCCCATAAAGCCCAAAC
TCCCACAATCTAAAATGCTCCGAGAAGATAAGAACCACAATATGTATGTTGCAGGATGTACAGA
AGTAGAAGTGAAGTCTACGGAGGAGGCGTTCGAGGTTTTCTGGAGAGGTCAGAAAAAGAGACGT
ATTGCTAACACCCATTTGAATAGAGAGTCCAGTCGTTCACATAGCGTGTTCAGCATTAAACTTG
TCCAGGCTCCCCTGGATGCTGATGGAGACAATGTCTTACAGGAAAAAGAGCAAATTACTATAAG
CCAGCTGTCTTTGGTAGATCTTGCTGGAAGTGAAAGAACTAACCGTACTAAAGCAGAAGGGAAC
AGGTTACGTGAAGCTGGAAACATTAATCAGTCATTGATGACACTAAGAACATGCATGGAAGTCC
TGAGAGAGAACCAGATGTATGGAACCAACAAGATGGTTCCATATCGAGATTCAAAGCTAACGCA
TCTATTCAAGAACTACTTTGATGGGGAGGGGAAGGTTCGGATGATCGTGTGTGTGAATCCTAAG
GCTGAAGACTATGAAGAAAGCTTGCAAGTCATGAGATTTGCTGAAGTAACCCAAGAAGTGGAAG
TAGCAAGACCAGTAGACAAGGCGATATGTGGCCTGACACCGGGGAGACGGTACAGAAACCTGCC
TCGGGCGGGCCCAGTTGGAGATGAACCTTTGACTGAAGAGATTCTACAGAGCTTCCCACCACTG
CCCCCATGCAAGCTTTTGGATGTCAATGATGAGGAGACCCTTCCAAGACTGATGGATGCTTTGG
AGAAACGACATCGCTTACGACAACTGATGACTGAGGAGCTTAACAAACAATGTGTAGCTTTCAA
AGCCTTATTCAAAGAATTTGACAATTCTCTATCAAATAAAGAAAACTACATTCAGGAAAAACTA
AATGAAAAAGAAAAAGTGATCTCAGGACAGAAATCAGAAATAGAACGACTGGAGAAGAAAAACA
AAACTTTGGAGTACAAGATTGAGATTTTGGAGAAAACAACTACGATCTATGAAGAAGATAAGCG
CAATCTGCAGCAGGAGCTTGAAAGCCAGCATCAGAAGCTCCAGCGGGAGTTTTCTGACAAGCGC
AGATTAGAAGCCAGGTTGCAAGGCATGGTGACAGAAACGACGATGAAGTGGCAGAAGGAATGTG
AGCGTCGGGTGGCAGCCACCCAGCTAGAGATGCAGAACAAACTCTGGGTCAAAGATGAAAAGCT
CAAACAGCTGAAGGCCATTGTGACTGAACCCAAACCTGAGAAGCCAGAGAGACCCTCCCGGGAC
CGGGACCGGGAGAAAATCATTCAGAGATCTGTCTCTCCTTCACCTGTGCCTCTTTCTAGTAACA
ATATTGCTCAGATTTCCAACGGCCAGCAACTCATGAGCCAGCCCCAGCTTCACAGACGCTCTAA
CTCTTGCAGCAGCATTTCTGTAGCTTCCTGTATTTCGGAATGGGAGCAGAAACTGTCTCCATTC
AGCACCCCTGTCAATGTCACCTCTCTTGCAAGGCACAGGCAGCAGGAGCCAGGACAAAGTAAAG
CGTGTATGGTGTCAGACAGAAGGCGAGGGATGTGCTGGACTGAAGGCAGGGAGATGGTCCCTAC
ATTCAGCAGTGAGATAGGCGTACAAGAGGACCACTGCCGCAGGAACACACCAATTCCTGTACGA
CACAGAAGGTCCCGCTCTGCAGGGAGCAGATGGGTAGATCATAAGCCTGCCTCTAATGTGCAAA
CTGAGACAGTCATGCAGCCACATGTCCCTCATGCCATCACAGTGTCTGTTGCAAATGAAAAGGC
ACTAGCTAAGTGTGAGAAGTACATGCTGACCCACCAGGAACTGGCCTCTGATGGGGAGATTCAG
ACTAAAGTAATTAAGGGTGATGTTTATAAGACGAGAGGAGGTGGACAGTCGGTTCAGTTTACTG
ATATTGAGACTTTAAAACAAGAATCGCCAACTGGTAGTCGAAAACGAAGATCGTCCACACTAGC
ACCTGCCCAACCCGATGGTACAGAGTCTGAATGGACCGATGTAGAAACAAGGTGTTCTGTTGCT
GTTGAAATGAGAGCAGGATCTCAGCTGGGACCCGGATATCAGCACCACGCACAACCCAAGCGCA
AGAAACCTTGAACTGACAACCCTGGTGACAGAAGGAGGTTTTTTGCTCGTGTTGGTGATTTACC
CAAAGCCGCACCAGATGCAGTGTCTTGAGTCGTCTTGCAGAAGAATGTGTCTAGATCACATTGC
CTTTTTTATTGTGACTTTTCAACTGTTCTGAATATTTTCTAAGATTTTATAAAAAACAAACAAA
TGCTGCTATTGATTAGCTGCAAAAAAATGCACTTTAGACATATTTAACAATTAAGATTTTTCAA
AGTAAAAATGGTGACTGGCCAATGGTTAAACCATTTTAGGGAAGGTATTTAGAATTTTGTATGT
ATATATTCACTCTCTGACCTTTATATATGCCAAAACAGCTAAATAAAAAAGCACTCAGAGGC

hide sequence

RefSeq Acc Id:

XM_039081482 ⟹ XP_038937410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,899 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,147 (-)	NCBI

RefSeq Acc Id:

XM_039081483 ⟹ XP_038937411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,899 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,145 (-)	NCBI

RefSeq Acc Id:

XM_039081484 ⟹ XP_038937412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,896 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,143 (-)	NCBI

RefSeq Acc Id:

XM_039081485 ⟹ XP_038937413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,320,666 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,090 (-)	NCBI

RefSeq Acc Id:

XM_039081486 ⟹ XP_038937414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,320,666 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,090 (-)	NCBI

RefSeq Acc Id:

XM_039081487 ⟹ XP_038937415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,904 (-)	NCBI
mRatBN7.2	8	62,397,948 - 62,425,162 (-)	NCBI

RefSeq Acc Id:

XM_039081488 ⟹ XP_038937416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,902 (-)	NCBI
mRatBN7.2	8	62,397,948 - 62,425,155 (-)	NCBI

RefSeq Acc Id:

XM_039081489 ⟹ XP_038937417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,899 (-)	NCBI
mRatBN7.2	8	62,397,908 - 62,425,143 (-)	NCBI

RefSeq Acc Id:

XM_063265493 ⟹ XP_063121563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,904 (-)	NCBI

RefSeq Acc Id:

XM_063265494 ⟹ XP_063121564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,899 (-)	NCBI

RefSeq Acc Id:

XM_063265496 ⟹ XP_063121566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,895 (-)	NCBI

RefSeq Acc Id:

XM_063265497 ⟹ XP_063121567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,790 - 71,321,907 (-)	NCBI

RefSeq Acc Id:

XM_063265498 ⟹ XP_063121568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,908 (-)	NCBI

RefSeq Acc Id:

XM_063265499 ⟹ XP_063121569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,895 (-)	NCBI

RefSeq Acc Id:

XM_063265500 ⟹ XP_063121570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,790 - 71,321,911 (-)	NCBI

RefSeq Acc Id:

XM_063265502 ⟹ XP_063121572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,897 (-)	NCBI

RefSeq Acc Id:

XM_063265503 ⟹ XP_063121573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,320,666 (-)	NCBI

RefSeq Acc Id:

XM_063265504 ⟹ XP_063121574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,320,666 (-)	NCBI

RefSeq Acc Id:

XM_063265505 ⟹ XP_063121575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,320,765 (-)	NCBI

RefSeq Acc Id:

XM_063265506 ⟹ XP_063121576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,321,904 (-)	NCBI

RefSeq Acc Id:

XM_063265507 ⟹ XP_063121577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	71,293,439 - 71,319,244 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101625	(Get FASTA)	NCBI Sequence Viewer
	XP_038937410	(Get FASTA)	NCBI Sequence Viewer
	XP_038937411	(Get FASTA)	NCBI Sequence Viewer
	XP_038937412	(Get FASTA)	NCBI Sequence Viewer
	XP_038937413	(Get FASTA)	NCBI Sequence Viewer
	XP_038937414	(Get FASTA)	NCBI Sequence Viewer
	XP_038937415	(Get FASTA)	NCBI Sequence Viewer
	XP_038937416	(Get FASTA)	NCBI Sequence Viewer
	XP_038937417	(Get FASTA)	NCBI Sequence Viewer
	XP_063121563	(Get FASTA)	NCBI Sequence Viewer
	XP_063121564	(Get FASTA)	NCBI Sequence Viewer
	XP_063121566	(Get FASTA)	NCBI Sequence Viewer
	XP_063121567	(Get FASTA)	NCBI Sequence Viewer
	XP_063121568	(Get FASTA)	NCBI Sequence Viewer
	XP_063121569	(Get FASTA)	NCBI Sequence Viewer
	XP_063121570	(Get FASTA)	NCBI Sequence Viewer
	XP_063121572	(Get FASTA)	NCBI Sequence Viewer
	XP_063121573	(Get FASTA)	NCBI Sequence Viewer
	XP_063121574	(Get FASTA)	NCBI Sequence Viewer
	XP_063121575	(Get FASTA)	NCBI Sequence Viewer
	XP_063121576	(Get FASTA)	NCBI Sequence Viewer
	XP_063121577	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95742	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033647.6
	ENSRNOP00000074399
	ENSRNOP00000074399.2
	ENSRNOP00000080806
	ENSRNOP00000080806.1
	ENSRNOP00000083679.1
	ENSRNOP00000091527
	ENSRNOP00000091527.1

RefSeq Acc Id:

NP_001101625 ⟸ NM_001108155

- UniProtKB:

A0A8I6GJ20 (UniProtKB/TrEMBL), A6J569 (UniProtKB/TrEMBL), D4AAG4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKSAKAKMPRKPVIKKGSQTNLKDPVGVYCRVRPLSFPDQECCVEVVNSTTVQLHTPEGYRLNR
NGDYKETQYSFKRVFGTHTTQKELFDVVASPLVDDLIHGKNGLLFTYGVTGSGKTYTMTGSPGS
GGLLPRCLNMIFNSIGSFQAKRFVFKSNDRNSMEIQCEVDALLERQKREAMPIPKTPSSKRQAD
PEFADMINVQEFCKAEEVDEDSVYGVFVSYIEIYNNYLYDLLEEVQFDPIKPKLPQSKMLREDK
NHNMYVAGCTEVEVKSTEEAFEVFWRGQKKRRIANTHLNRESSRSHSVFSIKLVQAPLDADGDN
VLQEKEQITISQLSLVDLAGSERTNRTKAEGNRLREAGNINQSLMTLRTCMEVLRENQMYGTNK
MVPYRDSKLTHLFKNYFDGEGKVRMIVCVNPKAEDYEESLQVMRFAEVTQEVEVARPVDKAICG
LTPGRRYRNLPRAGPVGDEPLTEEILQSFPPLPPCKLLDVNDEETLPRLMDALEKRHRLRQLMT
EELNKQCVAFKALFKEFDNSLSNKENYIQEKLNEKEKVISGQKSEIERLEKKNKTLEYKIEILE
KTTTIYEEDKRNLQQELESQHQKLQREFSDKRRLEARLQGMVTETTMKWQKECERRVAATQLEM
QNKLWVKDEKLKQLKAIVTEPKPEKPERPSRDRDREKIIQRSVSPSPVPLSSNNIAQISNGQQL
MSQPQLHRRSNSCSSISVASCISEWEQKLSPFSTPVNVTSLARHRQQEPGQSKACMVSDRRRGM
CWTEGREMVPTFSSEIGVQEDHCRRNTPIPVRHRRSRSAGSRWVDHKPASNVQTETVMQPHVPH
AITVSVANEKALAKCEKYMLTHQELASDGEIQTKVIKGDVYKTRGGGQSVQFTDIETLKQESPT
GSRKRRSSTLAPAQPDGTESEWTDVETRCSVAVEMRAGSQLGPGYQHHAQPKRKKP

hide sequence

RefSeq Acc Id:

ENSRNOP00000074399 ⟸ ENSRNOT00000091755

RefSeq Acc Id:

ENSRNOP00000033647 ⟸ ENSRNOT00000037028

RefSeq Acc Id:	XP_038937410 ⟸ XM_039081482
- Peptide Label:	isoform X1
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937411 ⟸ XM_039081483
- Peptide Label:	isoform X2
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937412 ⟸ XM_039081484
- Peptide Label:	isoform X4
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937417 ⟸ XM_039081489
- Peptide Label:	isoform X13
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937414 ⟸ XM_039081486
- Peptide Label:	isoform X9
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937413 ⟸ XM_039081485
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZRP3 (UniProtKB/TrEMBL), D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937415 ⟸ XM_039081487
- Peptide Label:	isoform X10
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937416 ⟸ XM_039081488
- Peptide Label:	isoform X12
- UniProtKB:	D4AAG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000091527 ⟸ ENSRNOT00000112104

RefSeq Acc Id:

ENSRNOP00000083679 ⟸ ENSRNOT00000100547

RefSeq Acc Id:

ENSRNOP00000080806 ⟸ ENSRNOT00000111055

RefSeq Acc Id:	XP_063121568 ⟸ XM_063265498
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063121576 ⟸ XM_063265506
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063121563 ⟸ XM_063265493
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063121564 ⟸ XM_063265494
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063121572 ⟸ XM_063265502
- Peptide Label:	isoform X16
- UniProtKB:	A0A0G2K7Y7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121566 ⟸ XM_063265496
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063121569 ⟸ XM_063265499
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063121575 ⟸ XM_063265505
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063121574 ⟸ XM_063265504
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZWA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121573 ⟸ XM_063265503
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063121577 ⟸ XM_063265507
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063121570 ⟸ XM_063265500
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063121567 ⟸ XM_063265497
- Peptide Label:	isoform X7

Protein Domains

Kinesin motor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAG4-F1-model_v2	AlphaFold	D4AAG4	1-944	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696060

Promoter ID:

EPDNEW_R6574

Type:

initiation region

Name:

Kif23_1

Description:

kinesin family member 23

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	66,893,198 - 66,893,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308596	AgrOrtholog
BioCyc Gene	G2FUF-30180	BioCyc
Ensembl Genes	ENSRNOG00000014080	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037028.6	UniProtKB/TrEMBL
	ENSRNOT00000091755.2	UniProtKB/TrEMBL
	ENSRNOT00000100547.1	UniProtKB/TrEMBL
	ENSRNOT00000111055.1	UniProtKB/TrEMBL
	ENSRNOT00000112104	ENTREZGENE
	ENSRNOT00000112104.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.4330	UniProtKB/TrEMBL
	3.40.850.10	UniProtKB/TrEMBL
InterPro	Kif23_Arf-bd	UniProtKB/TrEMBL
	Kif23_Arf-bd_sf	UniProtKB/TrEMBL
	Kinesin-like_fam	UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:315740	UniProtKB/TrEMBL
NCBI Gene	315740	ENTREZGENE
PANTHER	KINESIN-LIKE PROTEIN KIF23	UniProtKB/TrEMBL
	PTHR24115	UniProtKB/TrEMBL
Pfam	Kinesin	UniProtKB/TrEMBL
	MKLP1_Arf_bdg	UniProtKB/TrEMBL
PhenoGen	Kif23	PhenoGen
PRINTS	KINESINHEAVY	UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_DOMAIN1	UniProtKB/TrEMBL
	KINESIN_MOTOR_DOMAIN2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014080	RatGTEx
SMART	KISc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K7Y7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZRP3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZWA3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJ20	ENTREZGENE, UniProtKB/TrEMBL
	A6J569	ENTREZGENE, UniProtKB/TrEMBL
	D4AAG4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Kif23	kinesin family member 23	Kif23_predicted	kinesin family member 23 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Kif23_predicted	kinesin family member 23 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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