Coch (cochlin) - Rat Genome Database

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Gene: Coch (cochlin) Rattus norvegicus
Analyze
Symbol: Coch
Name: cochlin
RGD ID: 1308536
Description: Predicted to enable collagen binding activity. Predicted to be involved in regulation of cell shape. Predicted to act upstream of or within defense response to bacterium; positive regulation of innate immune response; and sensory perception of sound. Predicted to be located in extracellular matrix and extracellular region. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coagulation factor C homolog (Limulus polyphemus); coagulation factor C homolog, cochlin (Limulus polyphemus); LOC362735
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8674,766,485 - 74,780,504 (+)NCBIGRCr8
mRatBN7.2669,031,139 - 69,045,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,031,167 - 69,045,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,453,486 - 69,467,230 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0669,760,133 - 69,773,877 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,199,622 - 69,213,366 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,359,702 - 72,373,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,359,791 - 72,373,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0681,924,131 - 81,937,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,692,946 - 71,697,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1671,605,998 - 71,709,462 (+)NCBI
Celera667,908,175 - 67,912,285 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
diazinon  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gallic acid  (ISO)
genistein  (ISO)
ibuprofen  (ISO)
isotretinoin  (ISO)
lead(0)  (ISO)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methylarsonic acid  (ISO)
methylmercury chloride  (EXP,ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
Monobutylphthalate  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
paclitaxel  (EXP)
paracetamol  (ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium bromate  (EXP)
progesterone  (ISO)
SB 431542  (ISO)
scopolamine  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Mutations in a novel cochlear gene cause DFNA9, a human nonsyndromic deafness with vestibular dysfunction. Robertson NG, etal., Nat Genet. 1998 Nov;20(3):299-303.
Additional References at PubMed
PMID:11709536   PMID:12477932   PMID:18304733   PMID:18706483   PMID:21073934   PMID:21886777   PMID:22610276   PMID:23020749   PMID:23376485   PMID:23684986  


Genomics

Comparative Map Data
Coch
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8674,766,485 - 74,780,504 (+)NCBIGRCr8
mRatBN7.2669,031,139 - 69,045,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,031,167 - 69,045,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,453,486 - 69,467,230 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0669,760,133 - 69,773,877 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,199,622 - 69,213,366 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,359,702 - 72,373,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,359,791 - 72,373,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0681,924,131 - 81,937,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4671,692,946 - 71,697,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1671,605,998 - 71,709,462 (+)NCBI
Celera667,908,175 - 67,912,285 (+)NCBICelera
Cytogenetic Map6q23NCBI
COCH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381430,874,559 - 30,895,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1430,874,514 - 30,895,065 (+)EnsemblGRCh38hg38GRCh38
GRCh371431,343,765 - 31,359,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,413,516 - 30,429,573 (+)NCBINCBI36Build 36hg18NCBI36
Build 341430,413,515 - 30,429,573NCBI
Celera1411,209,192 - 11,225,274 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1411,460,861 - 11,476,943 (+)NCBIHuRef
CHM1_11431,342,916 - 31,358,998 (+)NCBICHM1_1
T2T-CHM13v2.01425,072,046 - 25,093,101 (+)NCBIT2T-CHM13v2.0
Coch
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,640,156 - 51,652,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1251,640,124 - 51,652,554 (+)EnsemblGRCm39 Ensembl
GRCm381251,593,283 - 51,606,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,593,341 - 51,605,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv371252,694,442 - 52,706,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,515,075 - 52,527,393 (+)NCBIMGSCv36mm8
Celera1252,896,695 - 52,909,012 (+)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1222.11NCBI
Coch
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,639,274 - 29,650,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540929,639,274 - 29,650,389 (-)NCBIChiLan1.0ChiLan1.0
COCH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,201,552 - 32,217,707 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11431,418,054 - 31,437,661 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01411,649,072 - 11,665,231 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11429,848,611 - 29,864,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1429,848,611 - 29,868,943 (+)Ensemblpanpan1.1panPan2
COCH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,215,101 - 10,230,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,214,536 - 10,233,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,141,496 - 10,159,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,316,037 - 10,333,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,316,040 - 10,334,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,000,301 - 10,018,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,076,429 - 10,094,218 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,351,979 - 10,369,756 (+)NCBIUU_Cfam_GSD_1.0
Coch
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,111,312 - 42,127,606 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364945,617,016 - 5,633,083 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364945,617,201 - 5,633,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COCH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,576,153 - 68,594,077 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1768,580,124 - 68,595,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Coch
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248201,366,384 - 1,381,099 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248201,367,582 - 1,381,630 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Coch
68 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:16
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000007365
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat

Markers in Region
RH128933  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,044,896 - 69,045,092 (+)MAPPERmRatBN7.2
Rnor_6.0672,373,483 - 72,373,678NCBIRnor6.0
Rnor_5.0681,937,642 - 81,937,837UniSTSRnor5.0
RGSC_v3.4671,706,113 - 71,706,308UniSTSRGSC3.4
Celera667,920,696 - 67,920,891UniSTS
RH 3.4 Map31524.0UniSTS
Cytogenetic Map6q22UniSTS
RH143184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,029,333 - 69,029,603 (+)MAPPERmRatBN7.2
Rnor_6.0672,357,958 - 72,358,227NCBIRnor6.0
Rnor_5.0681,922,367 - 81,922,636UniSTSRnor5.0
RGSC_v3.4671,691,142 - 71,691,411UniSTSRGSC3.4
Celera667,906,371 - 67,906,640UniSTS
RH 3.4 Map6508.4UniSTS
Cytogenetic Map6q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 12 36 4 4
Low 2 26 25 10 7 10 8 8 30 24 15 10 8
Below cutoff 1 14 15 15 15 1 6 7 16 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007365   ⟹   ENSRNOP00000007365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,031,167 - 69,045,109 (+)Ensembl
Rnor_6.0 Ensembl672,359,791 - 72,373,695 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107310   ⟹   ENSRNOP00000080257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,032,760 - 69,045,109 (+)Ensembl
RefSeq Acc Id: NM_001108710   ⟹   NP_001102180
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8674,766,547 - 74,780,492 (+)NCBI
mRatBN7.2669,031,167 - 69,045,110 (+)NCBI
Rnor_6.0672,359,762 - 72,363,872 (+)NCBI
Rnor_5.0681,924,131 - 81,937,869 (+)NCBI
RGSC_v3.4671,692,946 - 71,697,056 (+)RGD
Celera667,908,175 - 67,912,285 (+)RGD
Sequence:
RefSeq Acc Id: XM_063262102   ⟹   XP_063118172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8674,766,524 - 74,780,504 (+)NCBI
RefSeq Acc Id: XM_063262103   ⟹   XP_063118173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8674,766,485 - 74,780,504 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102180   ⟸   NM_001108710
- Peptide Label: precursor
- UniProtKB: F7FPJ4 (UniProtKB/TrEMBL),   B1H259 (UniProtKB/TrEMBL),   A0A9K3Y6Q1 (UniProtKB/TrEMBL),   A0A8I5ZPB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007365   ⟸   ENSRNOT00000007365
RefSeq Acc Id: ENSRNOP00000080257   ⟸   ENSRNOT00000107310
RefSeq Acc Id: XP_063118173   ⟸   XM_063262103
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118172   ⟸   XM_063262102
- Peptide Label: isoform X1
Protein Domains
LCCL   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H259-F1-model_v2 AlphaFold B1H259 1-552 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694587
Promoter ID:EPDNEW_R5109
Type:single initiation site
Name:Coch_1
Description:cochlin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0672,359,778 - 72,359,838EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308536 AgrOrtholog
BioCyc Gene G2FUF-37588 BioCyc
Ensembl Genes ENSRNOG00000005286 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007365 ENTREZGENE
  ENSRNOT00000007365.8 UniProtKB/TrEMBL
  ENSRNOT00000107310.1 UniProtKB/TrEMBL
Gene3D-CATH 2.170.130.20 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7367398 IMAGE-MGC_LOAD
InterPro LCCL UniProtKB/TrEMBL
  LCCL_sf UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:362735 UniProtKB/TrEMBL
MGC_CLONE MGC:188242 IMAGE-MGC_LOAD
NCBI Gene 362735 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  LCCL DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G08630) UniProtKB/TrEMBL
  LCCL DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G08630) UniProtKB/TrEMBL
  PTHR24020:SF36 UniProtKB/TrEMBL
Pfam LCCL UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Coch PhenoGen
PRINTS VWFADOMAIN UniProtKB/TrEMBL
PROSITE LCCL UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005286 RatGTEx
SMART LCCL UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP LCCL UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZPB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y6Q1 ENTREZGENE, UniProtKB/TrEMBL
  A6HBH2_RAT UniProtKB/TrEMBL
  B1H259 ENTREZGENE, UniProtKB/TrEMBL
  F7FPJ4 ENTREZGENE
UniProt Secondary F7FPJ4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-29 Coch  cochlin  Coch  coagulation factor C homolog, cochlin (Limulus polyphemus)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Coch  coagulation factor C homolog, cochlin (Limulus polyphemus)  Coch  coagulation factor C homolog (Limulus polyphemus)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Coch  coagulation factor C homolog (Limulus polyphemus)   Coch_predicted  coagulation factor C homolog (Limulus polyphemus) (predicted)  'predicted' is removed 2292626 APPROVED