Cep44 (centrosomal protein 44) - Rat Genome Database

Name: Cep44
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cep44 (centrosomal protein 44) Rattus norvegicus

Analyze

Symbol:

Cep44

Name:

centrosomal protein 44

RGD ID:

1308517

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in centriole replication and centriole-centriole cohesion. Predicted to be located in centriole. Predicted to be active in centrosome and spindle pole. Orthologous to human CEP44 (centrosomal protein 44); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; dibutyl phthalate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

centrosomal protein of 44 kDa; hypothetical protein LOC290722; LOC290722; MGC125247; RGD1308517; similar to KIAA1712 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP44 (centrosomal protein 44)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cep44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep44 (centrosomal protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CEP44 (centrosomal protein 44)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cep44 (centrosomal protein 44)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep44 (centrosomal protein 44)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cep44	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	38,722,259 - 38,741,603 (+)	NCBI		GRCr8
mRatBN7.2	16	33,711,548 - 33,733,226 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	33,711,559 - 33,733,225 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	37,321,017 - 37,340,601 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	40,732,376 - 40,751,960 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	36,966,075 - 36,985,383 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	37,177,379 - 37,199,043 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	37,177,443 - 37,196,784 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	37,139,513 - 37,159,628 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	37,139,490 - 37,159,706 (+)	NCBI
Celera	16	33,644,164 - 33,663,973 (+)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

fipronil (EXP)

folic acid (ISO)

genistein (ISO)

N-acetyl-1,4-benzoquinone imine (ISO)

pentanal (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

centriole replication (ISO,ISS)

centriole-centriole cohesion (ISO,ISS)

centrosome cycle (ISO,ISS)

Cellular Component

centriole (IEA,ISO,ISS)

centrosome (IBA,IEA,ISO,ISS)

cytoplasm (IEA)

midbody (IEA)

spindle pole (IBA,IEA,ISO,ISS)

Molecular Function

microtubule binding (ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21399614	PMID:31904090

Genomics

Comparative Map Data

Cep44
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	38,722,259 - 38,741,603 (+)	NCBI		GRCr8
mRatBN7.2	16	33,711,548 - 33,733,226 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	33,711,559 - 33,733,225 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	37,321,017 - 37,340,601 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	40,732,376 - 40,751,960 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	36,966,075 - 36,985,383 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	37,177,379 - 37,199,043 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	37,177,443 - 37,196,784 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	37,139,513 - 37,159,628 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	37,139,490 - 37,159,706 (+)	NCBI
Celera	16	33,644,164 - 33,663,973 (+)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

CEP44
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	174,283,706 - 174,333,381 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	174,283,730 - 174,333,380 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	175,205,062 - 175,254,532 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	175,441,435 - 175,478,057 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	175,579,785 - 175,628,174	NCBI
Celera	4	172,530,576 - 172,583,267 (+)	NCBI		Celera
Cytogenetic Map	4	q34.1	NCBI
HuRef	4	170,951,226 - 171,003,683 (+)	NCBI		HuRef
CHM1_1	4	175,181,283 - 175,230,994 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	177,623,203 - 177,673,220 (+)	NCBI		T2T-CHM13v2.0

Cep44
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	56,983,516 - 57,010,052 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	56,984,557 - 57,004,082 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	56,531,516 - 56,550,876 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	56,531,522 - 56,551,047 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	59,010,319 - 59,029,363 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	59,423,664 - 59,442,708 (-)	NCBI		MGSCv36	mm8
Celera	8	59,187,121 - 59,207,308 (-)	NCBI		Celera
Cytogenetic Map	8	B2	NCBI
cM Map	8	29.7	NCBI

Cep44
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	32,778,717 - 32,795,144 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	32,780,077 - 32,799,015 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP44
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	172,042,910 - 172,101,154 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	172,423,679 - 172,474,512 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	166,509,937 - 166,561,606 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	178,744,308 - 178,794,302 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	178,744,596 - 178,794,302 (+)	Ensembl	panpan1.1		panPan2

CEP44
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	24,797,449 - 24,831,898 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	24,797,309 - 24,848,320 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	25,450,100 - 25,485,400 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	24,960,291 - 24,984,630 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	24,960,835 - 24,999,557 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	24,908,420 - 24,944,250 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	24,800,042 - 24,833,230 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	24,949,359 - 24,985,209 (+)	NCBI		UU_Cfam_GSD_1.0

Cep44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	24,920,041 - 24,961,584 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936516	5,333,595 - 5,377,848 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936516	5,334,015 - 5,377,009 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP44
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	15,876,671 - 15,895,910 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	15,878,667 - 15,897,099 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CEP44
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	120,374,383 - 120,411,172 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	120,387,359 - 120,415,774 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	100,423,827 - 100,467,573 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep44
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	5,866,711 - 5,886,808 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	5,866,598 - 5,889,152 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cep44
68 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	20
Count of miRNA genes:	17
Interacting mature miRNAs:	20
Transcripts:	ENSRNOT00000014083
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		24	47	32	17	32	1	1	74	27	37	11	1
Low	3	19	10	9	2	9	7	10		8	4		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC107470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014083 ⟹ ENSRNOP00000014083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	33,711,559 - 33,733,225 (+)	Ensembl
Rnor_6.0 Ensembl	16	37,177,443 - 37,196,784 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100488 ⟹ ENSRNOP00000083699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	33,715,452 - 33,733,225 (+)	Ensembl

RefSeq Acc Id:

NM_001037181 ⟹ NP_001032258

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,259 - 38,741,600 (+)	NCBI
mRatBN7.2	16	33,711,625 - 33,730,971 (+)	NCBI
Rnor_6.0	16	37,177,443 - 37,196,784 (+)	NCBI
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI
RGSC_v3.4	16	37,139,513 - 37,159,628 (+)	RGD
Celera	16	33,644,164 - 33,663,973 (+)	RGD

Sequence:

show sequence

GGAGAACCTGTTCCCGCCACTTGTGCTCCCTTCTTTCCGTGTTGATCCTGTCGCCTTGGGAACC
TTTCAATTTGCTTAGCGGCTGCTGGCTGAACCGGAGCTCGCAGGTTTAGACCAAAGTGGCCCTT
CTGCTGTACTCACCGAGGTTCCTGGGTTGTAGGCGAACGATCAGATGAAAGGTTGTAAGATTAT
TTAAGAGTTGGAGCGGAATCAGATTATAATGGCAACAGGTGACCTAAAAAGAAGTTTGAGGAAG
CTAGAACAAGTTCTTCGTTCACTAAATTACCCTAATGAGGTGGATTATGTCGGCCTGATGAAGG
GAGACACAGCAGCATCCTTGCCCATCATCAGCTATTCTCTTACCTCATACTCCCCTCATGTAGC
AGAACTTCTGATGGAATCCAATATAGAGCTCATAGCGAAGAATGATGTGCGCTTTACAGATACT
GTCTATAAGCTTCTTCGTGATCAGTTTGATTATAAACCAATTTTGACAAAAAAGCAGTTTATAC
AGTCTGGATTTGCTGAATGGAAAATTGAAATTGTCTGTGATATATTAAATTGTGTGATGAAAAA
ACACAAGAAATTGATTGGCCTTGACAAGAATTCATCATGCCAAAGGAAGAAGAGCATTTCTGAG
AAGCCAGAACCTTGTTCAAGTCGTGAGAAGTGCCCTGCAGAGGCGGTTGGCATTGACGTCACGG
GCAGGTTTATGACATCAGGAAAGAAGAAGGCTGTGGTGATCCGTCACCTGTATACTGAAGAGAA
CGTTGGTGTTCCTGAAGGGACAGTAACCTCAACAGAAGTGAGTGAAGGCTGCGATGAGTTGGAA
GAGCAGAGTTCTGACATACGCATTCCTGAGGCGCAGGCCCCTGAGGTCAAGGCTGAGCTGCAAG
ATATGTGTGATAATCCTGAGCTTACCGCACTTCAGATCGCACTGGCTGAATGTCAGGAAAAGCT
GAAGAAGCTGACTTGGATAGAGAAACGGCTTGAGTGTTTGGAAGCTACAACAAAAGGGAAAGTG
ATGGTCGATGAGAAGGCCTGGAATAATATTCTAAGTCGAGTGACTCTTCTCGAAACAGAGATGC
TTCTGTCTAAAAAGAATGAATCTGTAGAGCCTAACACAACAAGTGAAGACTCTGAGTCAGTTAG
TGGTGTGGATGTTGTGCCCTATGATAAAAAATACAGTGTTGAGGGGCCGGCCAGTACCTGTCAC
TCATCTGGCTACAGTACAGTATCGTCGGCAACAGTGCCCAGGAGCTCCACTATTAATTACTGTG
GCTTGAACAATTTTTCAGAGGAAACAACTATGCAGAAAATGGAAAGGATGAAAAAAATGTTTGA
AGAGACCGCAGAGTTACTGAAATGCTCCAGTCGCTAATTGTAGACTGTTCTGCATAAACGTCCC
AGGACTTTGGCTACTTATATATATTCTGTATCTAAGAATTCTGTGTATAATTTTAATATACTAT
AATTTTTAATAGATGATAATTTTTATTAAGAATTTGCACTCTATTTGATATTTGAGTTTTTTCA
TTTTTAAATAAATACTTTTAATAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253087 ⟹ XP_006253149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,430 - 38,741,603 (+)	NCBI
mRatBN7.2	16	33,711,814 - 33,732,779 (+)	NCBI
Rnor_6.0	16	37,177,682 - 37,199,043 (+)	NCBI
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI

Sequence:

show sequence

CCAGCAAATTAGTATGGTTTTTGGAAGGCATGGAGTAGAAAGAATCTTAGTCCGCCCTCTTAGA
ATTGGTTTGTGGCTGCCAAGTTAAAGATGAAAGGTTGTAAGATTATTTAAGAGTTGGAGCGGAA
TCAGATTATAATGGCAACAGGTGACCTAAAAAGAAGTTTGAGGAAGCTAGAACAAGTTCTTCGT
TCACTAAATTACCCTAATGAGGTGGATTATGTCGGCCTGATGAAGGGAGACACAGCAGCATCCT
TGCCCATCATCAGCTATTCTCTTACCTCATACTCCCCTCATGTAGCAGAACTTCTGATGGAATC
CAATATAGAGCTCATAGCGAAGAATGATGTGCGCTTTACAGATACTGTCTATAAGCTTCTTCGT
GATCAGTTTGATTATAAACCAATTTTGACAAAAAAGCAGTTTATACAGTCTGGATTTGCTGAAT
GGAAAATTGAAATTGTCTGTGATATATTAAATTGTGTGATGAAAAAACACAAGAAATTGATTGG
CCTTGACAAGAATTCATCATGCCAAAGGAAGAAGAGCATTTCTGAGAAGCCAGAACCTTGTTCA
AGTCGTGAGAAGTGCCCTGCAGAGGCGGTTGGCATTGACGTCACGGGCAGGTTTATGACATCAG
GAAAGAAGAAGGCTGTGGTGATCCGTCACCTGTATACTGAAGAGAACGTTGGTGTTCCTGAAGG
GACAGTAACCTCAACAGAAGTGAGTGAAGGCTGCGATGAGTTGGAAGAGCAGAGTTCTGACATA
CGCATTCCTGAGGCGCAGGCCCCTGAGGTCAAGGCTGAGCTGCAAGATATGTGTGATAATCCTG
AGCTTACCGCACTTCAGATCGCACTGGCTGAATGTCAGGAAAAGCTGAAGAAGCTGACTTGGAT
AGAGAAACGGCTTGAGTGTTTGGAAGCTACAACAAAAGGGAAAGTGATGGTCGATGAGAAGGCC
TGGAATAATATTCTAAGTCGAGTGACTCTTCTCGAAACAGAGATGCTTCTGTCTAAAAAGAATG
AATCTGTAGAGCCTAACACAACAAGTGAAGACTCTGAGTCAGTTAGTGGTGTGGATGTTGTGCC
CTATGATAAAAAATACAGTGTTGAGGGGCCGGCCAGTACCTGTCACTCATCTGGCTACAGTACA
GTATCGTCGGCAACAGTGCCCAGGAGCTCCACTATTAATTACTGTGGCTTGAACAATTTTTCAG
AGGAAACAACTATGCAGAAAATGGAAAGGATGAAAAAAATGTTTGAAGAGACCGCAGAGTTACT
GAAATGCTCCAGTCGCTAATTGTAGACTGTTCTGCATAAACGTCCCAGGACTTTGGCTACTTAT
ATATATTCTGTATCTAAGAATTCTGTGTATAATTTTAATATACTATAATTTTTAATAGATGATA
ATTTTTATTAAGAATTTGCACTCTATTTGATATTTGAGTTTTTTCATTTTTAAATAAATACTTT
TAATAGTTTAAGCTGTAATTGTACCTATTTTCCAGTTTTCTTGGCATAACTTTGTTTCAGCATA
TTACTCTTACAGAGTGAAGTCATTACAGCAAGCTCTGTATTGCAGTGTTGACATTTACTGGCAG
CATGCTAAGTAATGCTTCTGAAAATACGGGCTGGAAGACCATGATCTACGTCTTGCTGGAGATA
TTCCAATAGGGACGTGCATATTGTGCACAGGAGACTTATGTAGTCTTACTGTATATGCTGGTGA
ATAGGTTTTAACAGAGTTAAAACGCTCACTGAAAACTAAACAAAACAAATCCAGTTTCTTCTGC
TTTAACAGAGCAATGCTGACAGCCTGCGTCTTTAGTGTGTTTCCTGAGGGAACTGTTCCGGGCA
TGTGAATACTCTGGTCTGTAACCTTAGACCGTCAGCACTGATCCAGATGCTGGCCATCCGTGCA
GCACACAGTGCAGGTGGGTTGCACTTTCTAATAGTGGAAACTTAACAACTTTTAAGGAGAGAAA
AGGTCTTAAAATTAAATTGAAAGAAAATCAAAATCACTTGGAAAGTCACTTAGAAAAATACCTT
CTAACTCTGCAAATGGTATATAGCGATAATAATTCTGGGTGATAGCCAAAAGTATAGGAAGTTA
TCCTTCTATTTTACATATTACATAACTCACTTCATTAGACTGTACAAATTTATTTTAATATTAA
GTAAAGTATTAATTTAGGTTTAAGTAGAAATAACTTTTGAGGAAAAGTTTTTAGTATTTTAACA
AATATTTAATGTTTACACTTTCAAACTACAATCTTTTATGTTAGCATTTAGAAGCATATAACCC
TTGGATTTAATAACATTTCAAAAAGCATATCTAGAATTAATGAGTCCTTTCGCTCTGTTTTTTT
AATTCAAGTACACTTAAGTTAGAAAAATCAAGAGAATTCAGTTGTGAAAATGCTGTTAGGCCCC
CAGTTATAAGAACCAGCGTGGGTTCACAGCGCCACCTTGTGGTTTCCATGCTACTCTGCTGGCT
TTTAATAAATGAATCCTCATAAAACTCCTGATTTTAAAAGAAGAGTGAGCATCTTTCAACTTTT
CTGTTGAAAGACAGAATAAAGTTGTTTCTGTCCCTTTGTCTTTATCTACCTCTTTCCCCATCTT
TTTTCGTAAGTTAAATTTTTACTTTTCACAAATAACAACCTGTCTACATAATAGGCATCGAATA
GTGTCAGTAATACACTTTCTCACTGAGATGGAGAAGAAACAGCATACTTTGTGAAAGAAAATCT
TATGAAATAAATCTAAGAATAATACACTTTGAACTAAAGGAATCAGAGTACTCATACAAGAGGA
CCATGGAGCCCACAAAGTGGTATGTAAAGAAAGGATAAAACCCTGGAAATTATGTAGTAGGAGG
TCTCTATCGAAATCAAGAAAGCTCACATTTATTTTTCTTTTTAAATACCAGGGGATATAATTGT
GGTTTTCCAAATATTTGAAGATGTAACTACATATATTTGAAGGTCAAGTGGTCTTCATTGAAAA
AAGGAAATTAATTCTGCCCTTGGCCCTACAAAATCCTACAGTGCAAAGCTTTAACCACCCATCC
ACTGCATGTTTGCACAGTTAACTGTTTTTTGTGTAGTATCATTTGTGTCGTCTCAGTCCGCAGT
GCTCACTTCAGACCATGCCAGCAGCAACAGCCCACTATGGTCCTGTGGTGACACTGAGCGGCCA
CCGGAGCCTGAGGAGGTGTCCCTGTGGGTCAGGTGGCTCCCAGGTTCCTTTTCTCATATCCCAT
GAATACAAAGTGAGATGATGGGAATACTTATAATCTAATCGATGTAAAGTATATAAAATAATAG
ATATTAAAAAATAAAACATCAGAAACTAGAAATTTGAAGCAAATTTTCTTATGGTGTTTACTAA
CAACTTAAAAATTAGTGAAAATGAACTTAGAGGGGTGTTGTATAGTTATACTTACCAAGACACT
TGCTTTAAAAGCAACCTCTAGAGAACTAAAGTTTGACTCATTGGGATTGTTGAAGAGATTGAAA
TAATTTTATTCTCATTTAGAAAATGCTTCTCCGGTTAGAGAGATGGCCTGGTGGTTAAGAACGG
AGTTCCAGAAGACTTGGGGTCAATACCCAGCACCCACATAGCAGCTCACAACTGTCTATAATTC
CATGTCCAGAGGATCTGACAGCGTCTTACAGACACATGCAGGCAAAACAGTGCGCATAAAATAA
AAATAAATAAATGATTAGGAAAATGTT

hide sequence

RefSeq Acc Id:

XM_006253089 ⟹ XP_006253151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,291 - 38,741,603 (+)	NCBI
mRatBN7.2	16	33,711,561 - 33,732,779 (+)	NCBI
Rnor_6.0	16	37,177,379 - 37,199,043 (+)	NCBI
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI

Sequence:

show sequence

GTTCATTAAACAAACCGTCGGCACGAGAGGCGACTCAGGGCGCGGGCGCTAATGCTCTAGGACT
GGAGAACCTGTTCCCGCCACTTGTGCTCCCTTCTTTCCGTGTTGATCCTGTCGCCTTGGGAACC
TTTCAATTTGCTTAGCGGCTGCTGGCTGAACCGGAGCTCGCAGGTTTAGACCAAAGTGGCCCTT
CTGCTGTACTCACCGAGGTTCCTGGGTTGTAGGCGAACGATCAGATGAAAGGTTGTAAGATTAT
TTAAGAGTTGGAGCGGAATCAGATTATAATGGCAACAGGTGACCTAAAAAGAAGTTTGAGGAAG
CTAGAACAAGTTCTTCGTTCACTAAATTACCCTAATGAGGTGGATTATGTCGGCCTGATGAAGG
GAGACACAGCAGCATCCTTGCCCATCATCAGCTATTCTCTTACCTCATACTCCCCTCATGTAGC
AGAACTTCTGATGGAATCCAATATAGAGCTCATAGCGAAGAATGATGTGCGCTTTACAGATACT
GTCTATAAGCTTCTTCGTGATCAGTTTGATTATAAACCAATTTTGACAAAAAAGCAGTTTATAC
AGTCTGGATTTGCTGAATGGAAAATTGAAATTGTCTGTGATATATTAAATTGTGTGATGAAAAA
ACACAAGAAATTGATTGGCCTTGACAAGAATTCATCATGCCAAAGGAAGAAGAGCATTTCTGAG
AAGCCAGAACCTTGTTCAAGTCGTGAGAAGTGCCCTGCAGAGGCGGTTGGCATTGACGTCACGG
GCAGGTTTATGACATCAGGAAAGAAGAAGGCTGTGGTGATCCGTCACCTGTATACTGAAGAGAA
CGTTGGTGTTCCTGAAGGGACAGTAACCTCAACAGAAGATATGTGTGATAATCCTGAGCTTACC
GCACTTCAGATCGCACTGGCTGAATGTCAGGAAAAGCTGAAGAAGCTGACTTGGATAGAGAAAC
GGCTTGAGTGTTTGGAAGCTACAACAAAAGGGAAAGTGATGGTCGATGAGAAGGCCTGGAATAA
TATTCTAAGTCGAGTGACTCTTCTCGAAACAGAGATGCTTCTGTCTAAAAAGAATGAATCTGTA
GAGCCTAACACAACAAGTGAAGACTCTGAGTCAGTTAGTGGTGTGGATGTTGTGCCCTATGATA
AAAAATACAGTGTTGAGGGGCCGGCCAGTACCTGTCACTCATCTGGCTACAGTACAGTATCGTC
GGCAACAGTGCCCAGGAGCTCCACTATTAATTACTGTGGCTTGAACAATTTTTCAGAGGAAACA
ACTATGCAGAAAATGGAAAGGATGAAAAAAATGTTTGAAGAGACCGCAGAGTTACTGAAATGCT
CCAGTCGCTAATTGTAGACTGTTCTGCATAAACGTCCCAGGACTTTGGCTACTTATATATATTC
TGTATCTAAGAATTCTGTGTATAATTTTAATATACTATAATTTTTAATAGATGATAATTTTTAT
TAAGAATTTGCACTCTATTTGATATTTGAGTTTTTTCATTTTTAAATAAATACTTTTAATAGTT
TAAGCTGTAATTGTACCTATTTTCCAGTTTTCTTGGCATAACTTTGTTTCAGCATATTACTCTT
ACAGAGTGAAGTCATTACAGCAAGCTCTGTATTGCAGTGTTGACATTTACTGGCAGCATGCTAA
GTAATGCTTCTGAAAATACGGGCTGGAAGACCATGATCTACGTCTTGCTGGAGATATTCCAATA
GGGACGTGCATATTGTGCACAGGAGACTTATGTAGTCTTACTGTATATGCTGGTGAATAGGTTT
TAACAGAGTTAAAACGCTCACTGAAAACTAAACAAAACAAATCCAGTTTCTTCTGCTTTAACAG
AGCAATGCTGACAGCCTGCGTCTTTAGTGTGTTTCCTGAGGGAACTGTTCCGGGCATGTGAATA
CTCTGGTCTGTAACCTTAGACCGTCAGCACTGATCCAGATGCTGGCCATCCGTGCAGCACACAG
TGCAGGTGGGTTGCACTTTCTAATAGTGGAAACTTAACAACTTTTAAGGAGAGAAAAGGTCTTA
AAATTAAATTGAAAGAAAATCAAAATCACTTGGAAAGTCACTTAGAAAAATACCTTCTAACTCT
GCAAATGGTATATAGCGATAATAATTCTGGGTGATAGCCAAAAGTATAGGAAGTTATCCTTCTA
TTTTACATATTACATAACTCACTTCATTAGACTGTACAAATTTATTTTAATATTAAGTAAAGTA
TTAATTTAGGTTTAAGTAGAAATAACTTTTGAGGAAAAGTTTTTAGTATTTTAACAAATATTTA
ATGTTTACACTTTCAAACTACAATCTTTTATGTTAGCATTTAGAAGCATATAACCCTTGGATTT
AATAACATTTCAAAAAGCATATCTAGAATTAATGAGTCCTTTCGCTCTGTTTTTTTAATTCAAG
TACACTTAAGTTAGAAAAATCAAGAGAATTCAGTTGTGAAAATGCTGTTAGGCCCCCAGTTATA
AGAACCAGCGTGGGTTCACAGCGCCACCTTGTGGTTTCCATGCTACTCTGCTGGCTTTTAATAA
ATGAATCCTCATAAAACTCCTGATTTTAAAAGAAGAGTGAGCATCTTTCAACTTTTCTGTTGAA
AGACAGAATAAAGTTGTTTCTGTCCCTTTGTCTTTATCTACCTCTTTCCCCATCTTTTTTCGTA
AGTTAAATTTTTACTTTTCACAAATAACAACCTGTCTACATAATAGGCATCGAATAGTGTCAGT
AATACACTTTCTCACTGAGATGGAGAAGAAACAGCATACTTTGTGAAAGAAAATCTTATGAAAT
AAATCTAAGAATAATACACTTTGAACTAAAGGAATCAGAGTACTCATACAAGAGGACCATGGAG
CCCACAAAGTGGTATGTAAAGAAAGGATAAAACCCTGGAAATTATGTAGTAGGAGGTCTCTATC
GAAATCAAGAAAGCTCACATTTATTTTTCTTTTTAAATACCAGGGGATATAATTGTGGTTTTCC
AAATATTTGAAGATGTAACTACATATATTTGAAGGTCAAGTGGTCTTCATTGAAAAAAGGAAAT
TAATTCTGCCCTTGGCCCTACAAAATCCTACAGTGCAAAGCTTTAACCACCCATCCACTGCATG
TTTGCACAGTTAACTGTTTTTTGTGTAGTATCATTTGTGTCGTCTCAGTCCGCAGTGCTCACTT
CAGACCATGCCAGCAGCAACAGCCCACTATGGTCCTGTGGTGACACTGAGCGGCCACCGGAGCC
TGAGGAGGTGTCCCTGTGGGTCAGGTGGCTCCCAGGTTCCTTTTCTCATATCCCATGAATACAA
AGTGAGATGATGGGAATACTTATAATCTAATCGATGTAAAGTATATAAAATAATAGATATTAAA
AAATAAAACATCAGAAACTAGAAATTTGAAGCAAATTTTCTTATGGTGTTTACTAACAACTTAA
AAATTAGTGAAAATGAACTTAGAGGGGTGTTGTATAGTTATACTTACCAAGACACTTGCTTTAA
AAGCAACCTCTAGAGAACTAAAGTTTGACTCATTGGGATTGTTGAAGAGATTGAAATAATTTTA
TTCTCATTTAGAAAATGCTTCTCCGGTTAGAGAGATGGCCTGGTGGTTAAGAACGGAGTTCCAG
AAGACTTGGGGTCAATACCCAGCACCCACATAGCAGCTCACAACTGTCTATAATTCCATGTCCA
GAGGATCTGACAGCGTCTTACAGACACATGCAGGCAAAACAGTGCGCATAAAATAAAAATAAAT
AAATGATTAGGAAAATGTT

hide sequence

RefSeq Acc Id:

XM_006253090 ⟹ XP_006253152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,291 - 38,741,603 (+)	NCBI
mRatBN7.2	16	33,711,657 - 33,732,779 (+)	NCBI
Rnor_6.0	16	37,177,525 - 37,199,043 (+)	NCBI
Rnor_5.0	16	36,981,816 - 37,003,656 (+)	NCBI

Sequence:

show sequence

CTGCTGGCTGAACCGGAGCTCGCAGGTTTAGACCAAAGTGGCCCTTCTGCTGTACTCACCGAGG
TTCCTGGGTTGTAGGCGAACGATCAGATGAAAGGTTGTAAGATTATTTAAGAGTTGGAGCGGAA
TCAGATTATAATGGCAACAGGTGACCTAAAAAGAAGTTTGAGGAAGCTAGAACAAGTTCTTCGT
TCACTAAATTACCCTAATGAGGTGGATTATGTCGGCCTGATGAAGGGAGACACAGCAGCATCCT
TGCCCATCATCAGCTATTCTCTTACCTCATACTCCCCTCATGTAGCAGAACTTCTGATGGAATC
CAATATAGAGCTCATAGCGAAGAATGATGTGCGCTTTACAGATACTGTCTATAAGAATTCATCA
TGCCAAAGGAAGAAGAGCATTTCTGAGAAGCCAGAACCTTGTTCAAGTCGTGAGAAGTGCCCTG
CAGAGGCGGTTGGCATTGACGTCACGGGCAGGTTTATGACATCAGGAAAGAAGAAGGCTGTGGT
GATCCGTCACCTGTATACTGAAGAGAACGTTGGTGTTCCTGAAGGGACAGTAACCTCAACAGAA
GTGAGTGAAGGCTGCGATGAGTTGGAAGAGCAGAGTTCTGACATACGCATTCCTGAGGCGCAGG
CCCCTGAGGTCAAGGCTGAGCTGCAAGATATGTGTGATAATCCTGAGCTTACCGCACTTCAGAT
CGCACTGGCTGAATGTCAGGAAAAGCTGAAGAAGCTGACTTGGATAGAGAAACGGCTTGAGTGT
TTGGAAGCTACAACAAAAGGGAAAGTGATGGTCGATGAGAAGGCCTGGAATAATATTCTAAGTC
GAGTGACTCTTCTCGAAACAGAGATGCTTCTGTCTAAAAAGAATGAATCTGTAGAGCCTAACAC
AACAAGTGAAGACTCTGAGTCAGTTAGTGGTGTGGATGTTGTGCCCTATGATAAAAAATACAGT
GTTGAGGGGCCGGCCAGTACCTGTCACTCATCTGGCTACAGTACAGTATCGTCGGCAACAGTGC
CCAGGAGCTCCACTATTAATTACTGTGGCTTGAACAATTTTTCAGAGGAAACAACTATGCAGAA
AATGGAAAGGATGAAAAAAATGTTTGAAGAGACCGCAGAGTTACTGAAATGCTCCAGTCGCTAA
TTGTAGACTGTTCTGCATAAACGTCCCAGGACTTTGGCTACTTATATATATTCTGTATCTAAGA
ATTCTGTGTATAATTTTAATATACTATAATTTTTAATAGATGATAATTTTTATTAAGAATTTGC
ACTCTATTTGATATTTGAGTTTTTTCATTTTTAAATAAATACTTTTAATAGTTTAAGCTGTAAT
TGTACCTATTTTCCAGTTTTCTTGGCATAACTTTGTTTCAGCATATTACTCTTACAGAGTGAAG
TCATTACAGCAAGCTCTGTATTGCAGTGTTGACATTTACTGGCAGCATGCTAAGTAATGCTTCT
GAAAATACGGGCTGGAAGACCATGATCTACGTCTTGCTGGAGATATTCCAATAGGGACGTGCAT
ATTGTGCACAGGAGACTTATGTAGTCTTACTGTATATGCTGGTGAATAGGTTTTAACAGAGTTA
AAACGCTCACTGAAAACTAAACAAAACAAATCCAGTTTCTTCTGCTTTAACAGAGCAATGCTGA
CAGCCTGCGTCTTTAGTGTGTTTCCTGAGGGAACTGTTCCGGGCATGTGAATACTCTGGTCTGT
AACCTTAGACCGTCAGCACTGATCCAGATGCTGGCCATCCGTGCAGCACACAGTGCAGGTGGGT
TGCACTTTCTAATAGTGGAAACTTAACAACTTTTAAGGAGAGAAAAGGTCTTAAAATTAAATTG
AAAGAAAATCAAAATCACTTGGAAAGTCACTTAGAAAAATACCTTCTAACTCTGCAAATGGTAT
ATAGCGATAATAATTCTGGGTGATAGCCAAAAGTATAGGAAGTTATCCTTCTATTTTACATATT
ACATAACTCACTTCATTAGACTGTACAAATTTATTTTAATATTAAGTAAAGTATTAATTTAGGT
TTAAGTAGAAATAACTTTTGAGGAAAAGTTTTTAGTATTTTAACAAATATTTAATGTTTACACT
TTCAAACTACAATCTTTTATGTTAGCATTTAGAAGCATATAACCCTTGGATTTAATAACATTTC
AAAAAGCATATCTAGAATTAATGAGTCCTTTCGCTCTGTTTTTTTAATTCAAGTACACTTAAGT
TAGAAAAATCAAGAGAATTCAGTTGTGAAAATGCTGTTAGGCCCCCAGTTATAAGAACCAGCGT
GGGTTCACAGCGCCACCTTGTGGTTTCCATGCTACTCTGCTGGCTTTTAATAAATGAATCCTCA
TAAAACTCCTGATTTTAAAAGAAGAGTGAGCATCTTTCAACTTTTCTGTTGAAAGACAGAATAA
AGTTGTTTCTGTCCCTTTGTCTTTATCTACCTCTTTCCCCATCTTTTTTCGTAAGTTAAATTTT
TACTTTTCACAAATAACAACCTGTCTACATAATAGGCATCGAATAGTGTCAGTAATACACTTTC
TCACTGAGATGGAGAAGAAACAGCATACTTTGTGAAAGAAAATCTTATGAAATAAATCTAAGAA
TAATACACTTTGAACTAAAGGAATCAGAGTACTCATACAAGAGGACCATGGAGCCCACAAAGTG
GTATGTAAAGAAAGGATAAAACCCTGGAAATTATGTAGTAGGAGGTCTCTATCGAAATCAAGAA
AGCTCACATTTATTTTTCTTTTTAAATACCAGGGGATATAATTGTGGTTTTCCAAATATTTGAA
GATGTAACTACATATATTTGAAGGTCAAGTGGTCTTCATTGAAAAAAGGAAATTAATTCTGCCC
TTGGCCCTACAAAATCCTACAGTGCAAAGCTTTAACCACCCATCCACTGCATGTTTGCACAGTT
AACTGTTTTTTGTGTAGTATCATTTGTGTCGTCTCAGTCCGCAGTGCTCACTTCAGACCATGCC
AGCAGCAACAGCCCACTATGGTCCTGTGGTGACACTGAGCGGCCACCGGAGCCTGAGGAGGTGT
CCCTGTGGGTCAGGTGGCTCCCAGGTTCCTTTTCTCATATCCCATGAATACAAAGTGAGATGAT
GGGAATACTTATAATCTAATCGATGTAAAGTATATAAAATAATAGATATTAAAAAATAAAACAT
CAGAAACTAGAAATTTGAAGCAAATTTTCTTATGGTGTTTACTAACAACTTAAAAATTAGTGAA
AATGAACTTAGAGGGGTGTTGTATAGTTATACTTACCAAGACACTTGCTTTAAAAGCAACCTCT
AGAGAACTAAAGTTTGACTCATTGGGATTGTTGAAGAGATTGAAATAATTTTATTCTCATTTAG
AAAATGCTTCTCCGGTTAGAGAGATGGCCTGGTGGTTAAGAACGGAGTTCCAGAAGACTTGGGG
TCAATACCCAGCACCCACATAGCAGCTCACAACTGTCTATAATTCCATGTCCAGAGGATCTGAC
AGCGTCTTACAGACACATGCAGGCAAAACAGTGCGCATAAAATAAAAATAAATAAATGATTAGG
AAAATGTT

hide sequence

RefSeq Acc Id:

XM_008771223 ⟹ XP_008769445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,725,432 - 38,741,603 (+)	NCBI
mRatBN7.2	16	33,714,798 - 33,733,226 (+)	NCBI
Rnor_6.0	16	37,180,670 - 37,199,043 (+)	NCBI

Sequence:

show sequence

CAACAGGTGACCTAAAAAGAAGTTTGAGGAAGCTAGAACAAGTTCTTCGTTCACTAAATTACCC
TAATGAGGTGGATTATGTCGGTCTGAATTGGGTTAGGAGGCCCACGAGGTACCTCACTCACCTC
AGCCATTGAATTCACTGCTGGCTGTGAGTATGTTCCAAGCCCTGGAGAGGGCAGCATCCTCCCA
CTTGGGGCTTCTCCTGCCCAGTCTGCCCCACATGTGGAGCCCTGCTCTCTGGGAACTCACCTTC
CCGCTAGGGGAGAGCCTGGTTAGGGCCTGGGGGTGGGGTGGGGTAGTCTCAGATCTTCCCAGGG
GCCAATGGAGTGACGAGCACTCAGCTAGTGGCCCAGCTGATGAGCTTCCCCTGCCCATGGTTTT
CTTTTTATGAGTCTTATTTAAATTCACTTTTGAGCTAACAGCTTGGTACAGGAACTGGTTGTTA
AGCCCGACGACCCTGACTTCAATCCCCAGGCCTCACACTGAAGCAAAAGCTCCAACTGCTCCTC
AAATTGTCCTTTGTCCTCATGTGTGTACCAAGATGCCTGTGCTATCATATATGTTTCCTGATGA
AGGGAGACACAGCAGCATCCTTGCCCATCATCAGCTATTCTCTTACCTCATACTCCCCTCATGT
AGCAGAACTTCTGATGGAATCCAATATAGAGCTCATAGCGAAGAATGATGTGCGCTTTACAGAT
ACTGTCTATAAGCTTCTTCGTGATCAGTTTGATTATAAACCAATTTTGACAAAAAAGCAGTTTA
TACAGTCTGGATTTGCTGAATGGAAAATTGAAATTGTCTGTGATATATTAAATTGTGTGATGAA
AAAACACAAGAAATTGATTGGCCTTGACAAGAATTCATCATGCCAAAGGAAGAAGAGCATTTCT
GAGAAGCCAGAACCTTGTTCAAGTCGTGAGAAGTGCCCTGCAGAGGCGGTTGGCATTGACGTCA
CGGGCAGGTTTATGACATCAGGAAAGAAGAAGGCTGTGGTGATCCGTCACCTGTATACTGAAGA
GAACGTTGGTGTTCCTGAAGGGACAGTAACCTCAACAGAAGTGAGTGAAGGCTGCGATGAGTTG
GAAGAGCAGAGTTCTGACATACGCATTCCTGAGGCGCAGGCCCCTGAGGTCAAGGCTGAGCTGC
AAGATATGTGTGATAATCCTGAGCTTACCGCACTTCAGATCGCACTGGCTGAATGTCAGGAAAA
GCTGAAGAAGCTGACTTGGATAGAGAAACGGCTTGAGTGTTTGGAAGCTACAACAAAAGGGAAA
GTGATGGTCGATGAGAAGGCCTGGAATAATATTCTAAGTCGAGTGACTCTTCTCGAAACAGAGA
TGCTTCTGTCTAAAAAGAATGAATCTGTAGAGCCTAACACAACAAGTGAAGACTCTGAGTCAGT
TAGTGGTGTGGATGTTGTGCCCTATGATAAAAAATACAGTGTTGAGGGGCCGGCCAGTACCTGT
CACTCATCTGGCTACAGTACAGTATCGTCGGCAACAGTGCCCAGGAGCTCCACTATTAATTACT
GTGGCTTGAACAATTTTTCAGAGGAAACAACTATGCAGAAAATGGAAAGGATGAAAAAAATGTT
TGAAGAGACCGCAGAGTTACTGAAATGCTCCAGTCGCTAATTGTAGACTGTTCTGCATAAACGT
CCCAGGACTTTGGCTACTTATATATATTCTGTATCTAAGAATTCTGTGTATAATTTTAATATAC
TATAATTTTTAATAGATGATAATTTTTATTAAGAATTTGCACTCTATTTGATATTTGAGTTTTT
TCATTTTTAAATAAATACTTTTAATAGTTTAAGCTGTAATTGTACCTATTTTCCAGTTTTCTTG
GCATAACTTTGTTTCAGCATATTACTCTTACAGAGTGAAGTCATTACAGCAAGCTCTGTATTGC
AGTGTTGACATTTACTGGCAGCATGCTAAGTAATGCTTCTGAAAATACGGGCTGGAAGACCATG
ATCTACGTCTTGCTGGAGATATTCCAATAGGGACGTGCATATTGTGCACAGGAGACTTATGTAG
TCTTACTGTATATGCTGGTGAATAGGTTTTAACAGAGTTAAAACGCTCACTGAAAACTAAACAA
AACAAATCCAGTTTCTTCTGCTTTAACAGAGCAATGCTGACAGCCTGCGTCTTTAGTGTGTTTC
CTGAGGGAACTGTTCCGGGCATGTGAATACTCTGGTCTGTAACCTTAGACCGTCAGCACTGATC
CAGATGCTGGCCATCCGTGCAGCACACAGTGCAGGTGGGTTGCACTTTCTAATAGTGGAAACTT
AACAACTTTTAAGGAGAGAAAAGGTCTTAAAATTAAATTGAAAGAAAATCAAAATCACTTGGAA
AGTCACTTAGAAAAATACCTTCTAACTCTGCAAATGGTATATAGCGATAATAATTCTGGGTGAT
AGCCAAAAGTATAGGAAGTTATCCTTCTATTTTACATATTACATAACTCACTTCATTAGACTGT
ACAAATTTATTTTAATATTAAGTAAAGTATTAATTTAGGTTTAAGTAGAAATAACTTTTGAGGA
AAAGTTTTTAGTATTTTAACAAATATTTAATGTTTACACTTTCAAACTACAATCTTTTATGTTA
GCATTTAGAAGCATATAACCCTTGGATTTAATAACATTTCAAAAAGCATATCTAGAATTAATGA
GTCCTTTCGCTCTGTTTTTTTAATTCAAGTACACTTAAGTTAGAAAAATCAAGAGAATTCAGTT
GTGAAAATGCTGTTAGGCCCCCAGTTATAAGAACCAGCGTGGGTTCACAGCGCCACCTTGTGGT
TTCCATGCTACTCTGCTGGCTTTTAATAAATGAATCCTCATAAAACTCCTGATTTTAAAAGAAG
AGTGAGCATCTTTCAACTTTTCTGTTGAAAGACAGAATAAAGTTGTTTCTGTCCCTTTGTCTTT
ATCTACCTCTTTCCCCATCTTTTTTCGTAAGTTAAATTTTTACTTTTCACAAATAACAACCTGT
CTACATAATAGGCATCGAATAGTGTCAGTAATACACTTTCTCACTGAGATGGAGAAGAAACAGC
ATACTTTGTGAAAGAAAATCTTATGAAATAAATCTAAGAATAATACACTTTGAACTAAAGGAAT
CAGAGTACTCATACAAGAGGACCATGGAGCCCACAAAGTGGTATGTAAAGAAAGGATAAAACCC
TGGAAATTATGTAGTAGGAGGTCTCTATCGAAATCAAGAAAGCTCACATTTATTTTTCTTTTTA
AATACCAGGGGATATAATTGTGGTTTTCCAAATATTTGAAGATGTAACTACATATATTTGAAGG
TCAAGTGGTCTTCATTGAAAAAAGGAAATTAATTCTGCCCTTGGCCCTACAAAATCCTACAGTG
CAAAGCTTTAACCACCCATCCACTGCATGTTTGCACAGTTAACTGTTTTTTGTGTAGTATCATT
TGTGTCGTCTCAGTCCGCAGTGCTCACTTCAGACCATGCCAGCAGCAACAGCCCACTATGGTCC
TGTGGTGACACTGAGCGGCCACCGGAGCCTGAGGAGGTGTCCCTGTGGGTCAGGTGGCTCCCAG
GTTCCTTTTCTCATATCCCATGAATACAAAGTGAGATGATGGGAATACTTATAATCTAATCGAT
GTAAAGTATATAAAATAATAGATATTAAAAAATAAAACATCAGAAACTAGAAATTTGAAGCAAA
TTTTCTTATGGTGTTTACTAACAACTTAAAAATTAGTGAAAATGAACTTAGAGGGGTGTTGTAT
AGTTATACTTACCAAGACACTTGCTTTAAAAGCAACCTCTAGAGAACTAAAGTTTGACTCATTG
GGATTGTTGAAGAGATTGAAATAATTTTATTCTCATTTAGAAAATGCTTCTCCGGTTAGAGAGA
TGGCCTGGTGGTTAAGAACGGAGTTCCAGAAGACTTGGGGTCAATACCCAGCACCCACATAGCA
GCTCACAACTGTCTATAATTCCATGTCCAGAGGATCTGACAGCGTCTTACAGACACATGCAGGC
AAAACAGTGCGCATAAAATAAAAATAAATAAATGATTAGGAAAATGTT

hide sequence

RefSeq Acc Id:

XM_039094372 ⟹ XP_038950300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,291 - 38,733,778 (+)	NCBI
mRatBN7.2	16	33,711,584 - 33,723,142 (+)	NCBI

RefSeq Acc Id:

XM_063275225 ⟹ XP_063131295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,430 - 38,741,603 (+)	NCBI

RefSeq Acc Id:

XM_063275226 ⟹ XP_063131296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,299 - 38,741,603 (+)	NCBI

RefSeq Acc Id:

XM_063275227 ⟹ XP_063131297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,725,432 - 38,741,603 (+)	NCBI

RefSeq Acc Id:

XM_063275228 ⟹ XP_063131298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	38,722,430 - 38,741,603 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032258	(Get FASTA)	NCBI Sequence Viewer
	XP_006253149	(Get FASTA)	NCBI Sequence Viewer
	XP_006253151	(Get FASTA)	NCBI Sequence Viewer
	XP_006253152	(Get FASTA)	NCBI Sequence Viewer
	XP_008769445	(Get FASTA)	NCBI Sequence Viewer
	XP_038950300	(Get FASTA)	NCBI Sequence Viewer
	XP_063131295	(Get FASTA)	NCBI Sequence Viewer
	XP_063131296	(Get FASTA)	NCBI Sequence Viewer
	XP_063131297	(Get FASTA)	NCBI Sequence Viewer
	XP_063131298	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07471	(Get FASTA)	NCBI Sequence Viewer
	EDL87141	(Get FASTA)	NCBI Sequence Viewer
	EDL87142	(Get FASTA)	NCBI Sequence Viewer
	EDL87143	(Get FASTA)	NCBI Sequence Viewer
	EDL87144	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014083
	ENSRNOP00000014083.5
	ENSRNOP00000083699
	ENSRNOP00000083699.1
	ENSRNOP00055010343
	ENSRNOP00060008597
	ENSRNOP00065004072
GenBank Protein	Q3B7T8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032258 ⟸ NM_001037181

- UniProtKB:

Q3B7T8 (UniProtKB/Swiss-Prot), A6KIX5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATGDLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIE
LIAKNDVRFTDTVYKLLRDQFDYKPILTKKQFIQSGFAEWKIEIVCDILNCVMKKHKKLIGLDK
NSSCQRKKSISEKPEPCSSREKCPAEAVGIDVTGRFMTSGKKKAVVIRHLYTEENVGVPEGTVT
STEVSEGCDELEEQSSDIRIPEAQAPEVKAELQDMCDNPELTALQIALAECQEKLKKLTWIEKR
LECLEATTKGKVMVDEKAWNNILSRVTLLETEMLLSKKNESVEPNTTSEDSESVSGVDVVPYDK
KYSVEGPASTCHSSGYSTVSSATVPRSSTINYCGLNNFSEETTMQKMERMKKMFEETAELLKCS
SR

hide sequence

RefSeq Acc Id:	XP_006253149 ⟸ XM_006253087
- Peptide Label:	isoform X1
- UniProtKB:	Q3B7T8 (UniProtKB/Swiss-Prot), A6KIX5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATGDLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIE LIAKNDVRFTDTVYKLLRDQFDYKPILTKKQFIQSGFAEWKIEIVCDILNCVMKKHKKLIGLDK NSSCQRKKSISEKPEPCSSREKCPAEAVGIDVTGRFMTSGKKKAVVIRHLYTEENVGVPEGTVT STEVSEGCDELEEQSSDIRIPEAQAPEVKAELQDMCDNPELTALQIALAECQEKLKKLTWIEKR LECLEATTKGKVMVDEKAWNNILSRVTLLETEMLLSKKNESVEPNTTSEDSESVSGVDVVPYDK KYSVEGPASTCHSSGYSTVSSATVPRSSTINYCGLNNFSEETTMQKMERMKKMFEETAELLKCS SR hide sequence

RefSeq Acc Id:

XP_006253151 ⟸ XM_006253089

- Peptide Label:

isoform X3

- Sequence:

show sequence

MATGDLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIE
LIAKNDVRFTDTVYKLLRDQFDYKPILTKKQFIQSGFAEWKIEIVCDILNCVMKKHKKLIGLDK
NSSCQRKKSISEKPEPCSSREKCPAEAVGIDVTGRFMTSGKKKAVVIRHLYTEENVGVPEGTVT
STEDMCDNPELTALQIALAECQEKLKKLTWIEKRLECLEATTKGKVMVDEKAWNNILSRVTLLE
TEMLLSKKNESVEPNTTSEDSESVSGVDVVPYDKKYSVEGPASTCHSSGYSTVSSATVPRSSTI
NYCGLNNFSEETTMQKMERMKKMFEETAELLKCSSR

hide sequence

RefSeq Acc Id:

XP_006253152 ⟸ XM_006253090

- Peptide Label:

isoform X6

- Sequence:

show sequence

MATGDLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIE
LIAKNDVRFTDTVYKNSSCQRKKSISEKPEPCSSREKCPAEAVGIDVTGRFMTSGKKKAVVIRH
LYTEENVGVPEGTVTSTEVSEGCDELEEQSSDIRIPEAQAPEVKAELQDMCDNPELTALQIALA
ECQEKLKKLTWIEKRLECLEATTKGKVMVDEKAWNNILSRVTLLETEMLLSKKNESVEPNTTSE
DSESVSGVDVVPYDKKYSVEGPASTCHSSGYSTVSSATVPRSSTINYCGLNNFSEETTMQKMER
MKKMFEETAELLKCSSR

hide sequence

RefSeq Acc Id:	XP_008769445 ⟸ XM_008771223
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZZU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCVPRCLCYHICFLMKGDTAASLPIISYSLTSYSPHVAELLMESNIELIAKNDVRFTDTVYKLL RDQFDYKPILTKKQFIQSGFAEWKIEIVCDILNCVMKKHKKLIGLDKNSSCQRKKSISEKPEPC SSREKCPAEAVGIDVTGRFMTSGKKKAVVIRHLYTEENVGVPEGTVTSTEVSEGCDELEEQSSD IRIPEAQAPEVKAELQDMCDNPELTALQIALAECQEKLKKLTWIEKRLECLEATTKGKVMVDEK AWNNILSRVTLLETEMLLSKKNESVEPNTTSEDSESVSGVDVVPYDKKYSVEGPASTCHSSGYS TVSSATVPRSSTINYCGLNNFSEETTMQKMERMKKMFEETAELLKCSSR hide sequence

RefSeq Acc Id:

ENSRNOP00000014083 ⟸ ENSRNOT00000014083

RefSeq Acc Id:	XP_038950300 ⟸ XM_039094372
- Peptide Label:	isoform X7
- UniProtKB:	A6KIX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000083699 ⟸ ENSRNOT00000100488

RefSeq Acc Id:	XP_063131296 ⟸ XM_063275226
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063131295 ⟸ XM_063275225
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063131298 ⟸ XM_063275228
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063131297 ⟸ XM_063275227
- Peptide Label:	isoform X5

Protein Domains

Centrosomal CEP44

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3B7T8-F1-model_v2	AlphaFold	Q3B7T8	1-386	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700077

Promoter ID:

EPDNEW_R10601

Type:

initiation region

Name:

Cep44_1

Description:

centrosomal protein 44

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	37,177,371 - 37,177,431	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308517	AgrOrtholog
BioCyc Gene	G2FUF-11518	BioCyc
Ensembl Genes	ENSRNOG00000010566	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055007734	UniProtKB/Swiss-Prot
	ENSRNOG00060006978	UniProtKB/Swiss-Prot
	ENSRNOG00065003827	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014083	ENTREZGENE
	ENSRNOT00000014083.6	UniProtKB/Swiss-Prot
	ENSRNOT00000100488.1	UniProtKB/TrEMBL
	ENSRNOT00055012959	UniProtKB/Swiss-Prot
	ENSRNOT00060011476	UniProtKB/Swiss-Prot
	ENSRNOT00065005617	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7457548	IMAGE-MGC_LOAD
InterPro	CEP44	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CEP44_CC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:290722	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:125247	IMAGE-MGC_LOAD
NCBI Gene	290722	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN OF 44 KDA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR31477	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CEP44	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cep44	PhenoGen
RatGTEx	ENSRNOG00000010566	RatGTEx
	ENSRNOG00055007734	RatGTEx
	ENSRNOG00060006978	RatGTEx
	ENSRNOG00065003827	RatGTEx
UniProt	A0A8I5ZZU2	ENTREZGENE, UniProtKB/TrEMBL
	A6KIX5	ENTREZGENE, UniProtKB/TrEMBL
	A6KIX6	ENTREZGENE, UniProtKB/TrEMBL
	CEP44_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-16	Cep44	centrosomal protein 44	RGD1308517	similar to KIAA1712 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308517	similar to KIAA1712 protein	RGD1308517_predicted	similar to KIAA1712 protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308517_predicted	similar to KIAA1712 protein (predicted)	LOC290722_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC290722_predicted	similar to KIAA1712 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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