Baiap2l1 (BAR/IMD domain containing adaptor protein 2 like 1) - Rat Genome Database

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Gene: Baiap2l1 (BAR/IMD domain containing adaptor protein 2 like 1) Rattus norvegicus
Analyze
Symbol: Baiap2l1
Name: BAR/IMD domain containing adaptor protein 2 like 1
RGD ID: 1308452
Description: Predicted to enable proline-rich region binding activity. Predicted to be involved in actin crosslink formation; actin filament bundle assembly; and positive regulation of actin filament polymerization. Predicted to be located in plasma membrane. Predicted to be active in cytosol and nucleoplasm. Predicted to colocalize with actin cytoskeleton. Orthologous to human BAIAP2L1 (BAR/IMD domain containing adaptor protein 2 like 1); INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BAI1-associated protein 2-like 1; BAI1-associated protein 2-like protein 1; brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1; LOC304282; MGC124996; RGD1308452; similar to RIKEN cDNA 1300006M19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,364,090 - 15,453,602 (+)NCBIGRCr8
mRatBN7.21210,250,434 - 10,339,937 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,250,473 - 10,339,928 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,057,724 - 11,147,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,681,004 - 11,770,446 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,704,737 - 10,794,201 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,226,967 - 12,321,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,227,010 - 12,321,172 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,285,428 - 14,373,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,584,749 - 10,668,948 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,614,677 - 10,698,850 (+)NCBI
Celera1212,049,051 - 12,139,941 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
Indeno[1,2,3-cd]pyrene  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorone  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (EXP)
triclosan  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IEA,ISO,ISS)
cytosol  (IBA,IEA,ISO,ISS)
nucleoplasm  (IBA,IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19056867   PMID:19366662   PMID:21098279   PMID:23533145   PMID:25468996  


Genomics

Comparative Map Data
Baiap2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,364,090 - 15,453,602 (+)NCBIGRCr8
mRatBN7.21210,250,434 - 10,339,937 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,250,473 - 10,339,928 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,057,724 - 11,147,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,681,004 - 11,770,446 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,704,737 - 10,794,201 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,226,967 - 12,321,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,227,010 - 12,321,172 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,285,428 - 14,373,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,584,749 - 10,668,948 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,614,677 - 10,698,850 (+)NCBI
Celera1212,049,051 - 12,139,941 (+)NCBICelera
Cytogenetic Map12p11NCBI
BAIAP2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,291,650 - 98,401,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,291,650 - 98,401,090 (-)EnsemblGRCh38hg38GRCh38
GRCh37797,920,962 - 98,030,402 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,760,491 - 97,868,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 34797,567,206 - 97,675,031NCBI
Celera792,614,864 - 92,724,061 (-)NCBICelera
Cytogenetic Map7q21.3-q22.1NCBI
HuRef792,521,351 - 92,630,267 (-)NCBIHuRef
CHM1_1797,850,970 - 97,960,506 (-)NCBICHM1_1
T2T-CHM13v2.0799,522,397 - 99,632,094 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2797,245,828 - 97,354,031 (-)NCBI
Baiap2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,201,335 - 144,294,922 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,201,336 - 144,294,922 (-)EnsemblGRCm39 Ensembl
GRCm385144,264,525 - 144,358,112 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,264,526 - 144,358,112 (-)EnsemblGRCm38mm10GRCm38
MGSCv375145,025,394 - 145,118,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,518,056 - 144,611,639 (-)NCBIMGSCv36mm8
MGSCv365143,346,452 - 143,439,351 (-)NCBIMGSCv36mm8
Celera5141,249,540 - 141,346,960 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map583.24NCBI
Baiap2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546014,176,111 - 14,258,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546014,174,592 - 14,259,416 (-)NCBIChiLan1.0ChiLan1.0
BAIAP2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26116,137,946 - 116,249,259 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,404,176 - 164,513,855 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,158,306 - 6,230,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17103,756,605 - 103,828,928 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,758,479 - 103,828,874 (-)Ensemblpanpan1.1panPan2
BAIAP2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,968,100 - 11,055,040 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,968,060 - 11,053,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,594,567 - 12,681,506 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,968,507 - 11,055,586 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,968,586 - 11,055,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,837,455 - 10,924,306 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,817,042 - 10,904,097 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,051,039 - 11,138,148 (+)NCBIUU_Cfam_GSD_1.0
Baiap2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,026,939 - 139,116,072 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936750826,818 - 918,322 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936750829,188 - 918,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAIAP2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,472,315 - 5,567,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,472,305 - 5,567,926 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,527,682 - 5,617,856 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BAIAP2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,769,302 - 14,876,121 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660701,199,985 - 1,311,915 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Baiap2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474031,860,161 - 31,949,820 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474031,858,557 - 31,949,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Baiap2l1
431 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:161
Interacting mature miRNAs:172
Transcripts:ENSRNOT00000060843
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat

Markers in Region
RH128970  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,339,749 - 10,339,901 (+)MAPPERmRatBN7.2
Rnor_6.01212,320,986 - 12,321,137NCBIRnor6.0
Rnor_5.01214,373,374 - 14,373,525UniSTSRnor5.0
RGSC_v3.41210,668,761 - 10,668,912UniSTSRGSC3.4
Celera1212,139,755 - 12,139,906UniSTS
Cytogenetic Map12p11UniSTS
AU046504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,300,873 - 10,301,037 (+)MAPPERmRatBN7.2
Rnor_6.01212,277,629 - 12,277,792NCBIRnor6.0
Rnor_5.01214,335,272 - 14,335,435UniSTSRnor5.0
RGSC_v3.41210,629,523 - 10,629,686UniSTSRGSC3.4
Cytogenetic Map12p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 49 41 41 20 29 11
Low 17 8 19 8 10 72 15 12 8
Below cutoff 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000060843   ⟹   ENSRNOP00000057568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,250,473 - 10,339,925 (+)Ensembl
Rnor_6.0 Ensembl1212,227,010 - 12,321,172 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,264,619 - 12,265,272 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092610   ⟹   ENSRNOP00000075796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,278,320 - 10,339,928 (+)Ensembl
Rnor_6.0 Ensembl1212,227,095 - 12,321,172 (+)Ensembl
RefSeq Acc Id: NM_001034140   ⟹   NP_001029312
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,364,154 - 15,453,602 (+)NCBI
mRatBN7.21210,250,478 - 10,339,936 (+)NCBI
Rnor_6.01212,227,014 - 12,321,172 (+)NCBI
Rnor_5.01214,285,428 - 14,373,560 (+)NCBI
RGSC_v3.41210,584,749 - 10,668,948 (+)RGD
Celera1212,049,051 - 12,139,941 (+)RGD
Sequence:
RefSeq Acc Id: XM_017598315   ⟹   XP_017453804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,364,090 - 15,453,602 (+)NCBI
mRatBN7.21210,250,434 - 10,339,937 (+)NCBI
Rnor_6.01212,226,967 - 12,321,172 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089346   ⟹   XP_038945274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,424,812 - 15,453,602 (+)NCBI
mRatBN7.21210,310,019 - 10,339,937 (+)NCBI
RefSeq Acc Id: XM_063271253   ⟹   XP_063127323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,364,106 - 15,453,602 (+)NCBI
RefSeq Acc Id: XM_063271254   ⟹   XP_063127324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,364,106 - 15,453,602 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001029312   ⟸   NM_001034140
- UniProtKB: Q5FWT2 (UniProtKB/Swiss-Prot),   Q3KR97 (UniProtKB/Swiss-Prot),   A0A8L2QTC2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453804   ⟸   XM_017598315
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QTC2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075796   ⟸   ENSRNOT00000092610
RefSeq Acc Id: ENSRNOP00000057568   ⟸   ENSRNOT00000060843
RefSeq Acc Id: XP_038945274   ⟸   XM_039089346
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127323   ⟸   XM_063271253
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127324   ⟸   XM_063271254
- Peptide Label: isoform X3
Protein Domains
IMD   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KR97-F1-model_v2 AlphaFold Q3KR97 1-516 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698424
Promoter ID:EPDNEW_R8949
Type:initiation region
Name:Baiap2l1_1
Description:BAI1-associated protein 2-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01212,227,003 - 12,227,063EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308452 AgrOrtholog
BioCyc Gene G2FUF-20038 BioCyc
Ensembl Genes ENSRNOG00000001007 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055011019 UniProtKB/Swiss-Prot
  ENSRNOG00060023712 UniProtKB/Swiss-Prot
  ENSRNOG00065000100 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060843 ENTREZGENE
  ENSRNOT00000060843.5 UniProtKB/TrEMBL
  ENSRNOT00000092610.2 UniProtKB/TrEMBL
  ENSRNOT00055018689 UniProtKB/Swiss-Prot
  ENSRNOT00060041160 UniProtKB/Swiss-Prot
  ENSRNOT00065000165 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7303117 IMAGE-MGC_LOAD
  IMAGE:7367101 IMAGE-MGC_LOAD
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Baiap2l1_I-BAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-BAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRSp53/IRTKS/Pinkbar UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IRTKS_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304282 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105537 IMAGE-MGC_LOAD
  MGC:124996 IMAGE-MGC_LOAD
NCBI Gene 304282 ENTREZGENE
PANTHER PTHR14206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14206:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IMD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Baiap2l1 PhenoGen
PROSITE IMD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001007 RatGTEx
  ENSRNOG00055011019 RatGTEx
  ENSRNOG00060023712 RatGTEx
  ENSRNOG00065000100 RatGTEx
SMART SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QTC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RB03_RAT UniProtKB/TrEMBL
  A6K1H6_RAT UniProtKB/TrEMBL
  BI2L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5FWT2 ENTREZGENE
UniProt Secondary Q5FWT2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Baiap2l1  BAR/IMD domain containing adaptor protein 2 like 1  Baiap2l1  BAI1-associated protein 2-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Baiap2l1  BAI1-associated protein 2-like 1  RGD1308452  similar to RIKEN cDNA 1300006M19  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1308452  similar to RIKEN cDNA 1300006M19  RGD1308452_predicted  similar to RIKEN cDNA 1300006M19 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308452_predicted  similar to RIKEN cDNA 1300006M19 (predicted)  LOC304282_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304282_predicted  similar to RIKEN cDNA 1300006M19 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL