Raet1c (retinoic acid early transcript gamma) - Rat Genome Database

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Gene: Raet1c (retinoic acid early transcript gamma) Rattus norvegicus
Analyze
Symbol: Raet1c
Name: retinoic acid early transcript gamma
RGD ID: 1308344
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC292458; retinoic acid early-inducible protein 1-gamma
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813,605,103 - 3,607,930 (-)NCBIGRCr8
mRatBN7.211,791,462 - 1,796,110 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.011,454,054 - 1,458,513 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013,154,827 - 3,159,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.411,942,782 - 1,947,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.111,928,837 - 1,947,241 (-)NCBI
Celera1320,264 - 324,682 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Variants

.
Variants in Raet1c
80 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:21
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000062040
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_017589819   ⟹   XP_017445308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813,605,103 - 3,607,930 (-)NCBI
mRatBN7.211,791,462 - 1,796,110 (-)NCBI
Rnor_6.011,454,054 - 1,458,513 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017445308 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_017445308   ⟸   XM_017589819
- Sequence:


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308344 AgrOrtholog
BioCyc Gene G2FUF-62470 BioCyc
NCBI Gene 292458 ENTREZGENE
PhenoGen Raet1c PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Raet1c  retinoic acid early transcript gamma   Raet1c_predicted  retinoic acid early transcript gamma (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Raet1c_predicted  retinoic acid early transcript gamma (predicted)      Symbol and Name status set to approved 70820 APPROVED