Mrpl30 (mitochondrial ribosomal protein L30)

Gene: Mrpl30 (mitochondrial ribosomal protein L30) Rattus norvegicus

Analyze

Symbol:

Mrpl30

Name:

mitochondrial ribosomal protein L30

RGD ID:

1308196

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL30 (mitochondrial ribosomal protein L30); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

39S ribosomal protein L30, mitochondrial; 39S ribosomal protein L30, mitochondrial-like; L30mt; large ribosomal subunit protein uL30m; LOC100910006; LOC301352; MRP-L30; NEWGENE_1308196

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,621,226 - 47,631,986 (+)	NCBI		GRCr8
mRatBN7.2	9	40,125,352 - 40,136,189 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,125,430 - 40,137,257 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,621,247 - 48,632,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,744,002 - 53,754,759 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,026,129 - 52,036,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,483,809 - 44,496,116 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,483,875 - 44,571,331 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,181,199 - 44,193,496 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,839,342 - 36,850,101 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,840,769 - 36,851,515 (+)	NCBI
Celera	9	37,879,660 - 37,890,419 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

diquat (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

gentamycin (EXP)

kojic acid (ISO)

lipopolysaccharide (ISO)

methidathion (ISO)

methylmercury chloride (ISO)

niclosamide (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (EXP)

progesterone (ISO)

silicon dioxide (ISO)

testosterone (ISO)

tolcapone (EXP)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

cytosolic large ribosomal subunit (IEA)

mitochondrial large ribosomal subunit (ISO,ISS)

mitochondrion (IBA,IEA,ISO)

Molecular Function

structural constituent of ribosome (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9857009	PMID:12477932	PMID:15057822	PMID:18614015	PMID:25278503	PMID:28892042

Genomics

Comparative Map Data

Mrpl30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,621,226 - 47,631,986 (+)	NCBI		GRCr8
mRatBN7.2	9	40,125,352 - 40,136,189 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,125,430 - 40,137,257 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,621,247 - 48,632,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,744,002 - 53,754,759 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,026,129 - 52,036,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,483,809 - 44,496,116 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,483,875 - 44,571,331 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,181,199 - 44,193,496 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,839,342 - 36,850,101 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,840,769 - 36,851,515 (+)	NCBI
Celera	9	37,879,660 - 37,890,419 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

MRPL30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	99,181,184 - 99,199,561 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	99,181,152 - 99,199,561 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	99,797,647 - 99,816,024 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	99,164,010 - 99,180,521 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	99,256,095 - 99,272,414	NCBI
Celera	2	94,002,173 - 94,018,689 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	93,563,315 - 93,581,802 (+)	NCBI		HuRef
CHM1_1	2	99,802,440 - 99,820,922 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	99,640,062 - 99,658,443 (+)	NCBI		T2T-CHM13v2.0

Mrpl30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,929,558 - 37,937,419 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,929,558 - 37,937,616 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,890,477 - 37,898,338 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,890,477 - 37,898,535 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,947,398 - 37,955,178 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,835,099 - 37,842,879 (+)	NCBI		MGSCv36	mm8
Celera	1	37,671,472 - 37,679,443 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	16.17	NCBI

Mrpl30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,509,216 - 5,522,552 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,509,517 - 5,519,633 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	29,206,579 - 29,248,923 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	29,216,713 - 29,251,683 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,099,758 - 100,116,240 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	100,111,515 - 100,129,797 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	100,111,515 - 100,127,864 (+)	Ensembl	panpan1.1		panPan2

MRPL30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	43,494,658 - 43,513,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	43,418,142 - 43,436,770 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,366,676 - 44,385,400 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	44,364,571 - 44,385,355 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	44,076,874 - 44,095,427 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,360,325 - 44,378,962 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	44,544,720 - 44,563,427 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,957,894 - 84,958,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936661	1,610,765 - 1,619,598 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	55,032,996 - 55,076,388 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	55,041,645 - 55,054,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	57,676,960 - 57,684,579 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,902,811 - 2,921,394 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,902,894 - 2,917,668 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	170,506,485 - 170,524,523 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	4,190,173 - 4,195,363 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	4,186,036 - 4,195,857 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrpl30
17 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
724543	Cm20	Cardiac mass QTL 20	3.9		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	16961398	40594091	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	22133322	49968732	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	23754024	58157242	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat

Markers in Region

RH131890

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	40,135,549 - 40,135,757 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,571,087 - 44,571,294	NCBI	Rnor6.0
Rnor_6.0	9	44,493,969 - 44,494,176	NCBI	Rnor6.0
Rnor_5.0	9	44,191,349 - 44,191,556	UniSTS	Rnor5.0
Rnor_5.0	9	44,268,467 - 44,268,674	UniSTS	Rnor5.0
RGSC_v3.4	9	36,849,462 - 36,849,669	UniSTS	RGSC3.4
Celera	9	37,889,780 - 37,889,987	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000075242 ⟹ ENSRNOP00000067807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	40,125,430 - 40,136,189 (+)	Ensembl
Rnor_6.0 Ensembl	9	44,491,177 - 44,571,331 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083245 ⟹ ENSRNOP00000068686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	40,132,974 - 40,137,257 (+)	Ensembl
Rnor_6.0 Ensembl	9	44,483,875 - 44,495,676 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088544 ⟹ ENSRNOP00000069419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	44,567,206 - 44,571,261 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110341 ⟹ ENSRNOP00000083246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	40,130,501 - 40,137,257 (+)	Ensembl

RefSeq Acc Id:

NM_001106903 ⟹ NP_001100373

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,621,227 - 47,631,986 (+)	NCBI
mRatBN7.2	9	40,125,430 - 40,136,189 (+)	NCBI
Rnor_6.0	9	44,483,849 - 44,494,608 (+)	NCBI
Rnor_5.0	9	44,181,199 - 44,193,496 (+)	NCBI
RGSC_v3.4	9	36,839,342 - 36,850,101 (+)	RGD
Celera	9	37,879,660 - 37,890,419 (+)	RGD

Sequence:

show sequence

CGTTCCGCTCCTTCCGGCTGCTGGGGGGCATTCGGAGTGGACACAGCGGTCGCTGGTTCCCACT
GTGTAGCCCTGAGGAGTGCTGCCCACTGTGATCACCATCGGTGTTATGCATCCCTGATCTCCTG
AGGAAGCCTCTGAAGAGAGGAATTCCCACACCTATGGCTGGGGTTCTGCGCTCAGTATTTCAGA
GGCCTCCAGGCAGACTACAGACTGTGAAGAAAGGTGCAGAATCTCTCATTGGTACAGAGTGGAT
TCGTCACAAATTTACCAGATCAAGAATTCCAGATAAAGTATTTCAGCCTAGACCTGAAGATCAT
GAAAAATACGGTGGAGACCCCCAAAACCCCCATAAACTGCACATTGTTACAAGAATAAGAAGCA
CAAAGAGGCGTCCATACTGGGAGAAAGATACGATCAAGATGCTGGGACTACAGAAGGCACACAG
CCCTCAGATCCACAAGAACATCCCGTCAGTGAATGCAAAGCTAAAAGTGGTTAAACACTTGATA
CGCATCCAGCCCCTGAAGCTGCCACAGGGACTTCCCACAGAAGAGACCATGTCCAGCACGTGCC
TCAAGAGCACTGGGGAATTGGTGGTGCAGTGGCATCTGAAGCCTGTGGAGCAGGAAGCAAAGTC
CTGAGGCCGCACAGATTCAGGCACAGATGGACTTGCTGAGGAAACCGTTCTCATTAAAGTGTGT
TAATCCAGTTATTTCCGCTGATGAAGTCCTGATGTTATCACTTGGTTCAGTTCTCTCCCTTTCT
CCCCTAAGAATTTTACTCCTCAGAGGGCAAGATCAACATTGAATAGCTCCCATTAGGCCCCTAA
CACTAACAGTTGTCATTGTCTCCTTGGAGAAACTGTTGTCTTCTTTAACTGCTTCCTCACTGAA
TTCTATAGATTCGAGAGGCTATGTACTAGTCAGTCCGAGGCTTGGTAGCTTATTGGGCAAGGAG
GTTTATCTTGGTTCTAAGCTCTGAGGAGTCCAAGCAAGGGCAGCATATCTCCTGAGGGCCTCCT
GTAGGATCCCCTATGTATCATGTCATACATGATAGGGGATGCCACACAGTTTTTTATGTCAGTG
GTGGAAAAAGTCATAGGTAAG

hide sequence

RefSeq Acc Id:

XM_008767056 ⟹ XP_008765278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,621,226 - 47,631,592 (+)	NCBI
mRatBN7.2	9	40,125,352 - 40,135,795 (+)	NCBI

Sequence:

show sequence

AGAATCGTATGCACTGTTACGGCAACGGCGCGGTTTGTGTGTCGCGCTGGTCCGGCTGCCTCCG
TTCCGCTCCTTCCGGCTGCTGGGGGGCATTCGGAGTGGACACAGCGGTCGCTGCCTCTGAAGAG
AGGAATTCCCACACCTATGGCTGGGGTTCTGCGCTCAGTATTTCAGAGGCCTCCAGGCAGACTA
CAGACTGTGAAGAAAGGTGCAGAATCTCTCATTGGTACAGAGTGGATTCGTCACAAATTTACCA
GATCAAGAATTCCAGATAAAGTATTTCAGCCTAGACCTGAAGATCATGAAAAATACGGTGGAGA
CCCCCAAAACCCCCATAAACTGCACATTGTTACAAGAATAAGAAGCACAAAGAGGCGTCCATAC
TGGGAGAAAGATACGATCAAGATGCTGGGACTACAGAAGGCACACAGCCCTCAGATCCACAAGA
ACATCCCGTCAGTGAATGCAAAGCTAAAAGTGGTTAAACACTTGATACGCATCCAGCCCCTGAA
GCTGCCACAGGGACTTCCCACAGAAGAGACCATGTCCAGCACGTGCCTCAAGAGCACTGGGGAA
TTGGTGGTGCAGTGGCATCTGAAGCCTGTGGAGCAGGAAGCAAAGTCCTGAGGCCGCACAGATT
CAGGCACAGATGGACTTGCTGAGGAAACCGTTCTCATTAAAGTGTGTTAATCCAGTTA

hide sequence

RefSeq Acc Id:

XM_039083224 ⟹ XP_038939152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,625,909 - 47,631,592 (+)	NCBI
mRatBN7.2	9	40,130,112 - 40,135,796 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100373	(Get FASTA)	NCBI Sequence Viewer
	XP_008765278	(Get FASTA)	NCBI Sequence Viewer
	XP_038939152	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68851	(Get FASTA)	NCBI Sequence Viewer
	EDL99223	(Get FASTA)	NCBI Sequence Viewer
	EDL99224	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067807
	ENSRNOP00000067807.3
	ENSRNOP00000068686.2
	ENSRNOP00000083246
	ENSRNOP00000083246.1
	ENSRNOP00055025877
	ENSRNOP00060025633
	ENSRNOP00065041607
GenBank Protein	P0C2C1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001100373 ⟸ NM_001106903
- Peptide Label:	precursor
- UniProtKB:	P0C2C1 (UniProtKB/Swiss-Prot), B5DEY4 (UniProtKB/TrEMBL), A0A8L2R012 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGVLRSVFQRPPGRLQTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEKYGGDPQNPH KLHIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGL PTEETMSSTCLKSTGELVVQWHLKPVEQEAKS hide sequence

RefSeq Acc Id:

ENSRNOP00000067807 ⟸ ENSRNOT00000075242

RefSeq Acc Id:

ENSRNOP00000068686 ⟸ ENSRNOT00000083245

RefSeq Acc Id:

ENSRNOP00000069419 ⟸ ENSRNOT00000088544

RefSeq Acc Id:	XP_008765278 ⟸ XM_008767056
- Peptide Label:	isoform X1
- UniProtKB:	P0C2C1 (UniProtKB/Swiss-Prot), B5DEY4 (UniProtKB/TrEMBL), A0A8L2R012 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGVLRSVFQRPPGRLQTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEKYGGDPQNPH KLHIVTRIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGL PTEETMSSTCLKSTGELVVQWHLKPVEQEAKS hide sequence

RefSeq Acc Id:	XP_038939152 ⟸ XM_039083224
- Peptide Label:	isoform X1
- UniProtKB:	P0C2C1 (UniProtKB/Swiss-Prot), B5DEY4 (UniProtKB/TrEMBL), A0A8L2R012 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000083246 ⟸ ENSRNOT00000110341

Protein Domains

Large ribosomal subunit protein uL30-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C2C1-F1-model_v2	AlphaFold	P0C2C1	1-160	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308196	AgrOrtholog
BioCyc Gene	G2FUF-27776	BioCyc
Ensembl Genes	ENSRNOG00000049330	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055018753	UniProtKB/Swiss-Prot
	ENSRNOG00060018355	UniProtKB/Swiss-Prot
	ENSRNOG00065029299	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000075242	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000075242.3	UniProtKB/Swiss-Prot
	ENSRNOT00000083245.2	UniProtKB/TrEMBL
	ENSRNOT00000110341.1	UniProtKB/TrEMBL
	ENSRNOT00055031989	UniProtKB/Swiss-Prot
	ENSRNOT00060031565	UniProtKB/Swiss-Prot
	ENSRNOT00065050633	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.1390.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	L30_ferredoxin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L30_bac-type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L30_ferredoxin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:301352	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	301352	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L30, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15892	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosomal_L30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mrpl30	PhenoGen
RatGTEx	ENSRNOG00000049330	RatGTEx
	ENSRNOG00055018753	RatGTEx
	ENSRNOG00060018355	RatGTEx
	ENSRNOG00065029299	RatGTEx
Superfamily-SCOP	SSF55129	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UI42_RAT	UniProtKB/TrEMBL
	A0A8I5ZZ09_RAT	UniProtKB/TrEMBL
	A0A8L2R012	ENTREZGENE, UniProtKB/TrEMBL
	B5DEY4	ENTREZGENE, UniProtKB/TrEMBL
	P0C2C1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Mrpl30	mitochondrial ribosomal protein L30	NEWGENE_1308196	mitochondrial ribosomal protein L30	Data merged from RGD:9097879	737654	PROVISIONAL
2012-07-05	LOC100910006	39S ribosomal protein L30, mitochondrial-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Mrpl30	mitochondrial ribosomal protein L30	Mrpl30_predicted	mitochondrial ribosomal protein L30 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mrpl30_predicted	mitochondrial ribosomal protein L30 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar