Cuedc2 (CUE domain containing 2) - Rat Genome Database

Name: Cuedc2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cuedc2 (CUE domain containing 2) Rattus norvegicus

Analyze

Symbol:

Cuedc2

Name:

CUE domain containing 2

RGD ID:

1308096

Description:

Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within negative regulation of cytokine production involved in inflammatory response and negative regulation of macrophage cytokine production. Predicted to be located in cytosol; nuclear membrane; and nucleoplasm. Orthologous to human CUEDC2 (CUE domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CUE domain-containing protein 2; LOC294009; MGC156734

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CUEDC2 (CUE domain containing 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cuedc2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cuedc2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CUEDC2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CUEDC2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cuedc2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CUEDC2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CUEDC2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cuedc2 (CUE domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CUEDC2 (CUE domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cuedc2 (CUE domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cuedc2 (CUE domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9636	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cuedc2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,133,479 - 255,142,016 (-)	NCBI		GRCr8
mRatBN7.2	1	245,192,057 - 245,200,594 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,192,063 - 245,200,339 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	253,313,471 - 253,321,666 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,008,153 - 260,016,346 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,659,906 - 252,668,098 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,078,107 - 266,087,057 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,078,108 - 266,086,299 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	251,546,666 - 251,554,858 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	251,809,748 - 251,818,045 (-)	NCBI
Celera	1	240,974,831 - 240,983,023 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

amitrole (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

caffeine (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dibutyl phthalate (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

folic acid (ISO)

furan (EXP)

hydralazine (ISO)

methimazole (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

quercetin (ISO)

selenium atom (ISO)

thioacetamide (EXP)

topotecan (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cytokine production involved in inflammatory response (IEA,ISO)

negative regulation of macrophage cytokine production (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

nuclear membrane (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

ubiquitin binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:24882011	PMID:33494071

Genomics

Comparative Map Data

Cuedc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,133,479 - 255,142,016 (-)	NCBI		GRCr8
mRatBN7.2	1	245,192,057 - 245,200,594 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,192,063 - 245,200,339 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	253,313,471 - 253,321,666 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,008,153 - 260,016,346 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,659,906 - 252,668,098 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,078,107 - 266,087,057 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,078,108 - 266,086,299 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	251,546,666 - 251,554,858 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	251,809,748 - 251,818,045 (-)	NCBI
Celera	1	240,974,831 - 240,983,023 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

CUEDC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	102,423,249 - 102,432,574 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	102,423,245 - 102,432,584 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	104,183,006 - 104,192,331 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	104,172,992 - 104,182,413 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	104,172,997 - 104,182,343	NCBI
Celera	10	97,923,900 - 97,933,326 (-)	NCBI		Celera
Cytogenetic Map	10	q24.32	NCBI
HuRef	10	97,816,186 - 97,825,506 (-)	NCBI		HuRef
CHM1_1	10	104,466,440 - 104,475,877 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	103,308,213 - 103,317,546 (-)	NCBI		T2T-CHM13v2.0

Cuedc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	46,318,251 - 46,327,144 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	46,318,251 - 46,327,141 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	46,329,812 - 46,338,672 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	46,329,812 - 46,338,702 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	46,404,302 - 46,413,150 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	46,383,855 - 46,391,935 (-)	NCBI		MGSCv36	mm8
Celera	19	47,093,205 - 47,102,049 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	38.81	NCBI

Cuedc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	7,975,190 - 7,976,875 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	7,969,389 - 7,977,073 (+)	NCBI	ChiLan1.0	ChiLan1.0

CUEDC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	114,310,746 - 114,320,508 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	114,316,068 - 114,325,830 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	99,026,735 - 99,036,175 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	102,492,412 - 102,502,107 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	102,492,412 - 102,502,107 (-)	Ensembl	panpan1.1		panPan2

CUEDC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	14,929,980 - 14,937,611 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	14,930,027 - 14,937,686 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	15,102,323 - 15,109,956 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	15,403,994 - 15,411,629 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	15,404,041 - 15,411,555 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	14,949,036 - 14,967,421 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	14,988,136 - 14,995,768 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	15,120,753 - 15,128,387 (-)	NCBI		UU_Cfam_GSD_1.0

Cuedc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	31,836,148 - 31,842,506 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	3,439,289 - 3,449,293 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	3,439,385 - 3,445,731 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CUEDC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	113,434,465 - 113,464,028 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	113,434,458 - 113,443,643 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	123,267,612 - 123,269,611 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUEDC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	95,454,936 - 95,463,491 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	95,451,470 - 95,463,454 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	56,560,698 - 56,570,962 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cuedc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	1,826,744 - 1,828,822 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	1,826,744 - 1,833,945 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cuedc2
23 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	76
Interacting mature miRNAs:	79
Transcripts:	ENSRNOT00000026609
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228985440	245907899	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	0.00000487	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	201554356	246554356	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
1357399	Bw45	Body weight QTL 45	3.05		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	1	206329708	251329708	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	191019702	246062233	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	218753689	245907899	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	218753816	256448513	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	201554356	246554356	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	201554356	246554356	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	201554356	246554356	Rat
1357404	Bw42	Body weight QTL 42	4.49	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	206329708	251329708	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	206081677	251081677	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	202069611	247069611	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	201554356	246554356	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	213707201	252085212	Rat

Markers in Region

RH140950

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	245,192,210 - 245,192,482 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,078,261 - 266,078,532	NCBI	Rnor6.0
Rnor_5.0	1	273,509,202 - 273,509,473	UniSTS	Rnor5.0
RGSC_v3.4	1	251,546,820 - 251,547,091	UniSTS	RGSC3.4
Celera	1	240,974,985 - 240,975,256	UniSTS
RH 3.4 Map	1	1627.6	UniSTS
Cytogenetic Map	1	q54	UniSTS

AW434352

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	245,191,816 - 245,191,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,077,867 - 266,078,005	NCBI	Rnor6.0
Rnor_5.0	1	273,508,808 - 273,508,946	UniSTS	Rnor5.0
RGSC_v3.4	1	251,546,426 - 251,546,564	UniSTS	RGSC3.4
Celera	1	240,974,591 - 240,974,729	UniSTS
RH 3.4 Map	1	1623.9	UniSTS
Cytogenetic Map	1	q54	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	29	35	26	18	26	2	4	49	29	34	9	2
Low		14	22	15	1	15	6	7	25	6	7	2	6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001835411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC127518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026609 ⟹ ENSRNOP00000026609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,192,063 - 245,200,266 (-)	Ensembl
Rnor_6.0 Ensembl	1	266,078,108 - 266,086,299 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097448 ⟹ ENSRNOP00000080530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,192,063 - 245,200,339 (-)	Ensembl

RefSeq Acc Id:

NM_001079886 ⟹ NP_001073355

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,479 - 255,141,671 (-)	NCBI
mRatBN7.2	1	245,192,057 - 245,200,249 (-)	NCBI
Rnor_6.0	1	266,078,107 - 266,086,299 (-)	NCBI
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI
RGSC_v3.4	1	251,546,666 - 251,554,858 (-)	RGD
Celera	1	240,974,831 - 240,983,023 (-)	RGD

Sequence:

show sequence

GACACAGGGTACCTACACTTCATGGTGTTCCCTTACAACACCCCCCCCCGGGGGGGGTGTCGGC
CGGACCCCTTTCTCTAATTGTCTCCGTGGCCTGTATGGAGGAACATCTAGTTTGTTCAGGCCTA
TCTCGTCACGTGACTCACCCCCTTCCACTGGCGGCTGCTGCATCGCTGTCCTCCGGCAGCTATT
GTGAAAGTTTTTGAGTGCCCTGCTAACGGTTATAAAAAGCTCTTGCTTCAAGGGTCGGCCGTCA
AGGGGATCCTACTTTCTGTGCTTCACCTCCCGTGGTTTGTGCACTTGCCTAACTTTGAGTGGCC
GGATCCCTTGTTCCTCACAATGGCTTTGGTACTAAGACCTGGCGTGGGAATCAAGGTGAAATAG
TATTTGCTAAGTCCTTCATTACGCTTCATCGAGTCTTTACTAAAGGGCACGGAAGAAGTAGTGA
AGACCTCTGGGCTAAGGACCCCTTTACTCCCTTAGCTTCTCAGGGCTCCTTCCCACATTGCTTC
CCAGGAATTCTCCATCCACGTGGCCTGCTCTCAAAGACAGAGCATGGAGTTGGAGAGGATCGTC
AGTTCAGCCCTCTTTGCCTTCGTTCAGACACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATG
AGGTCATCTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGA
GAACTTTGATATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATC
CACAGGGGTATAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACA
AAGAGACCCTGAGGCGACCTGAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAA
CACCCAAGATGAGGCAGCTGCTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTG
TTCCCTACCTGTTCTATGGAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAG
AAGCTGTGCAGATGCTGATAGAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCA
GGATTTACCCAGACGCCTCAGAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAG
TACATGATGGTGGACAGGGCAGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCC
CCAAGAAGCTGATCCGATACATTGACAACCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGA
TGTACGGAACCCCGAAACTGAGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAG
TACCGCTTCCACTGAGGCACTGGCTGGACTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGA
AACCTTCCCGTCCACCCTACCCCTTCTCTATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGC
TTCCTTCAACAGCACAGTAAAGGTTGTCCAAGGAAGGTGTAAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_006231458 ⟹ XP_006231520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,851 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,429 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,430 (-)	NCBI
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI

Sequence:

show sequence

CTCTGGCCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAA
GTCGCCGGCGGCGCCTGACGGAGCAGAAGACAGAGCATGGAGTTGGAGAGGATCGTCAGTTCAG
CCCTCTTTGCCTTCGTTCAGACACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATGAGGTCAT
CTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTT
GATATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGG
GTATAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGAA
CCTGCACCCACAGAGCTCCTGTGTCCAAGGTCATGTGCCTATTTTTCCAGAGACCCTGAGGCGA
CCTGAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGATGAGGCAG
CTGCTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCTGTTCTAT
GGAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCAGATGCTG
ATAGAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCCAGACGCC
TCAGAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAG
GGCAGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGA
TACATTGACAACCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAA
CTGAGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGG
CACTGGCTGGACTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCC
TACCCCTTCTCTATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAG
TAAAGGTTGTCCAAGGAAGGT

hide sequence

RefSeq Acc Id:

XM_006231460 ⟹ XP_006231522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,851 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,430 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,430 (-)	NCBI
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI

Sequence:

show sequence

CTCTGGCCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAA
GTCGCCGGCGGCGCCTGACGGAGCAGACAGAGCATGGAGTTGGAGAGGATCGTCAGTTCAGCCC
TCTTTGCCTTCGTTCAGACACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATGAGGTCATCTT
CTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTTGAT
ATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGGGTA
TAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGAACCT
GCACCCACAGAGCTCCTGTGTCCAAGGTCATGTGCCTATTTTTCCAGAGACCCTGAGGCGACCT
GAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGATGAGGCAGCTG
CTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCTGTTCTATGGA
GCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCAGATGCTGATA
GAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCCAGACGCCTCA
GAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGC
AGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGATAC
ATTGACAACCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAACTG
AGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGGCAC
TGGCTGGACTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCCTAC
CCCTTCTCTATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAGTAA
AGGTTGTCCAAGGAAGGT

hide sequence

RefSeq Acc Id:

XM_006231462 ⟹ XP_006231524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,684 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,373 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,493 (-)	NCBI
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI

Sequence:

show sequence

CTTTGTACGGGCAAATTGCCCTCTTCAAAAATGGCCACCATGTCATCCTCCAGAAGGGAACTGC
TCTGGCCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAAG
TCGCCGGCGGCGCCTGACGGAGCAGGTGATTTCCCTTCCAGCCTTAGGAGAGTCTCAGAGAGCA
TTGACACAGGAAGACAGAGCATGGAGTTGGAGAGGATCGTCAGTTCAGCCCTCTTTGCCTTCGT
TCAGACACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATGAGGTCATCTTCTCCTATGTGCTT
GGGGTCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTTGATATGGAGGCTTTCA
TTGAGATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGGGTATAATAGAAGACAT
GGTGCAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGAACCTGCACCCACAGAGC
TCCTGTGTCCAAGGTCATGTGCCTATTTTTCCAGAGACCCTGAGGCGACCTGAAAAGCTCAAGG
AAGAGAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGATGAGGCAGCTGCTGCTGAGGAAGA
ACAGCCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCTGTTCTATGGAGCAGGCCCAGTGG
GTGCTGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCAGATGCTGATAGAGGGCAAGGAAG
AGGGGCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCCAGACGCCTCAGAGGCCCCCGGAA
GGAGGAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGCAGAGGACCAGAAG
ACTCACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGATACATTGACAACCAAG
TAGTGAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAACTGAGGAGATGAAGGC
CACATACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGGCACTGGCTGGACTCTG
CCAGGCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCCTACCCCTTCTCTATGC
CTTTGCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAGTAAAGGTTGTCCAAGG
AAGGT

hide sequence

RefSeq Acc Id:

XM_006231466 ⟹ XP_006231528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,861 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,430 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,430 (-)	NCBI
Rnor_5.0	1	273,509,048 - 273,517,438 (-)	NCBI

Sequence:

show sequence

CTCTGGCCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAA
GTCGCCGGCGGCGCCTGACGGAGCAGACAGAGCATGGAGTTGGAGAGGATCGTCAGTTCAGCCC
TCTTTGCCTTCGTTCAGACACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATGAGGTCATCTT
CTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTTGAT
ATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGGGTA
TAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGACCCT
GAGGCGACCTGAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGAT
GAGGCAGCTGCTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCT
GTTCTATGGAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCA
GATGCTGATAGAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCC
AGACGCCTCAGAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGG
TGGACAGGGCAGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCT
GATCCGATACATTGACAACCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAAC
CCCGAAACTGAGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCC
ACTGAGGCACTGGCTGGACTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCG
TCCACCCTACCCCTTCTCTATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAAC
AGCACAGTAAAGGTTGTCCAAGGAAGGT

hide sequence

RefSeq Acc Id:

XM_008760409 ⟹ XP_008758631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,679 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,260 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,488 (-)	NCBI

Sequence:

show sequence

TACGGGCAAATTGCCCTCTTCAAAAATGGCCACCATGTCATCCTCCAGAAGGGAACTGCTCTGG
CCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAAGTCGCC
GGCGGCGCCTGACGGAGCAGGTGATTTCCCTTCCAGCCTTAGGAGAGTCTCAGAGAGCATTGAC
ACAGGAAGACAGAGCATGGAGTTGGAGAGGATCGTCAGTTCAGCCCTCTTTGCCTTCGTTCAGA
CACACCTCCCAGAGGCAGACCTCAGTGGCTTGGATGAGGTCATCTTCTCCTATGTGCTTGGGGT
CCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTTGATATGGAGGCTTTCATTGAG
ATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGGGTATAATAGAAGACATGGTGC
AGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGACCCTGAGGCGACCTGAAAAGCT
CAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGATGAGGCAGCTGCTGCTGAG
GAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCTGTTCTATGGAGCAGGCCC
AGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCAGATGCTGATAGAGGGCAA
GGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCCAGACGCCTCAGAGGCCCC
CGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGCAGAGGACC
AGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGATACATTGACAA
CCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAACTGAGGAGATG
AAGGCCACATACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGGCACTGGCTGGA
CTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCCTACCCCTTCTC
TATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAGTAAAGGTTGTC
CAAGGAAGGT

hide sequence

RefSeq Acc Id:

XM_008760410 ⟹ XP_008758632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,142,016 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,594 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,087,057 (-)	NCBI

Sequence:

show sequence

AGCCCTGCCAGCGTAGGCAAGAGGACACTGTGGCTGCAGAGGATCTGCAGGCTGTCTTGGACCC
GGGTTCAGTTCTATCCTCACTTCAAGCATTTAATGTTCATCACCTGCTAAAGACCCTGTAAGCC
ACGTTAATCTTGGGAAGACATCTATAAGGGACAAAGGGGACACATAAGGTCCTGGAAGTGAGAC
CCCAAGAGCTGACTGGGTGGCAGGGCTTGAAGCCAGATCGAACACATGCTGGAATATGGGGGAG
ATCTTTAGATCTTGCAATAGGAGACACCACATCCAGTCGGTGACCCACAGAGATTGAAGAAGGA
CCGGAAAGACAAGGAAGAGGAAAGGGAAATCTATAGGATTTCCAGGTGGGGCTCCTGGTGACGA
GGAAATAAGGCAGGGAAGGAAATCCTGGAATCTTTCAGGAATAAATGCCGAAATGTTCCGGACC
TCTAGCGGACAATAAGGGAACAAGTCAGTCATGCCTCTCTACCCAAAACAAAAATGGCCGCCGG
AGGAGCCGGTTCAAAACGCGGGTATATTTGAAAATGAGGAGAGAAACCCCGCCTTTGTACGGGC
AAATTGCCCTCTTCAAAAATGGCCACCATGTCATCCTCCAGAAGGGAACTGCTCTGGCCCCGCC
TTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAAGTCGCCGGCGGCG
CCTGACGGAGCAGGTGATTTCCCTTCCAGCCTTAGGAGAGTCTCAGAGAGCATTGACACAGGTG
GCTTGGATGAGGTCATCTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGCC
ATCAGAGGAGAACTTTGATATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTTT
GCCCACATCCACAGGGGTATAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGTG
CTAGGAACAAAGAGAACCTGCACCCACAGAGCTCCTGTGTCCAAGGTCATGTGCCTATTTTTCC
AGAGACCCTGAGGCGACCTGAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAAC
ACCCAAGATGAGGCAGCTGCTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTGT
TCCCTACCTGTTCTATGGAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAGA
AGCTGTGCAGATGCTGATAGAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCAG
GATTTACCCAGACGCCTCAGAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAGT
ACATGATGGTGGACAGGGCAGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGGCCCC
CAAGAAGCTGATCCGATACATTGACAACCAAGTAGTGAGCACCAAAGGAGAGCGATTCAAAGAT
GTACGGAACCCCGAAACTGAGGAGATGAAGGCCACATACATCAACCTCAAGCCGGCCAGAAAGT
ACCGCTTCCACTGAGGCACTGGCTGGACTCTGCCAGGCATCACAGATCCCAGAAGGATGCAGAA
ACCTTCCCGTCCACCCTACCCCTTCTCTATGCCTTTGCTCTAGTGTTAATTTATTCTTGGAGCT
TCCTTCAACAGCACAGTAAAGGTTGTCCAAGGAAGGT

hide sequence

RefSeq Acc Id:

XM_008760411 ⟹ XP_008758633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,759 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,404 (-)	NCBI
Rnor_6.0	1	266,078,113 - 266,086,526 (-)	NCBI

Sequence:

show sequence

GGGTATATTTGAAAATGAGGAGAGAAACCCCGCCTTTGTACGGGCAAATTGCCCTCTTCAAAAA
TGGCCACCATGTCATCCTCCAGAAGGGAACTGCTCTGGCCCCGCCTTTGGTCTCCTTGTTGGGG
CTAGGGGGTAAGAACTGCACCGCGCGGGACAAGTCGCCGGCGGCGCCTGACGGAGCAGGTGATT
TCCCTTCCAGCCTTAGGAGAGTCTCAGAGAGCATTGACACAGGAAGACAGAGCATGGAGTTGGA
GAGGATCGTCAGTTCAGCCCTCTTTGCCTTCGTTCAGACACACCTCCCAGAGGCAGACCTCAGT
GGCTTGGATGAGGTCATCTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGGC
CATCAGAGGAGAACTTTGATATGGAGGCTTTCATTGAGATGATGGAGGCTTATGTGCCTGGCTT
TGCCCACATCCACAGGGGTATAATAGAAGACATGGTGCAGACGCTCTCGGTGCAGCTGAGCAGT
GCTAGGAACAAAGAGAACCTGCACCCACAGAGCTCCTGTGTCCAAGGTCATGTGCCTATTTTTC
CAGAGACCCTGAGGCGACCTGAAAAGCTCAAGGAAGAGAGCAGGCCTCCTGCTGCTACTGGGAA
CACCCAAGATGAGGCAGCTGCTGCTGAGGAAGAACAGCCAGGAGTAGACGTACTCTTGGAGGTG
TTCCCTACCTGTTCTATGGAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGAACCTGGAAG
AAGCTGTGCAGATGCTGATAGAGGGCAAGGAAGAGGGGCCTCCAGGCTGGGGTGGCCCAAATCA
GGATTTACCCAGACGCCTCAGAGGCCCCCGGAAGGAGGAGTTGAAGTCTTTCATCCTTCAGAAG
TACATGATGGTGGACAGGGCAGAGGACCAGAAGACTCACAGACCTATGGCTCCCAAGGAGTCAT
TCGTTGCCTGATTGTCTGCCAGGCCCCCAAGAAGCTGATCCGATACATTGACAACCAAGTAGTG
AGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAACTGAGGAGATGAAGGCCACAT
ACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGGCACTGGCTGGACTCTGCCAGG
CATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCCTACCCCTTCTCTATGCCTTTG
CTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAGTAAAGGTTGTCCAAGGAA

hide sequence

RefSeq Acc Id:

XM_017589041 ⟹ XP_017444530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,850 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,428 (-)	NCBI
Rnor_6.0	1	266,078,110 - 266,086,430 (-)	NCBI

Sequence:

show sequence

CTCTGGCCCCGCCTTTGGTCTCCTTGTTGGGGCTAGGGGGTAAGAACTGCACCGCGCGGGACAA
GTCGCCGGCGGCGCCTGACGGAGCAGTGGCTTGGATGAGGTCATCTTCTCCTATGTGCTTGGGG
TCCTGGAGGACCTGGGCCCCTCAGGGCCATCAGAGGAGAACTTTGATATGGAGGCTTTCATTGA
GATGATGGAGGCTTATGTGCCTGGCTTTGCCCACATCCACAGGGGTATAATAGAAGACATGGTG
CAGACGCTCTCGGTGCAGCTGAGCAGTGCTAGGAACAAAGAGAACCTGCACCCACAGAGCTCCT
GTGTCCAAGGTCATGTGCCTATTTTTCCAGAGACCCTGAGGCGACCTGAAAAGCTCAAGGAAGA
GAGCAGGCCTCCTGCTGCTACTGGGAACACCCAAGATGAGGCAGCTGCTGCTGAGGAAGAACAG
CCAGGAGTAGACGTACTCTTGGAGGTGTTCCCTACCTGTTCTATGGAGCAGGCCCAGTGGGTGC
TGGCCAAAGCTCGGGGGAACCTGGAAGAAGCTGTGCAGATGCTGATAGAGGGCAAGGAAGAGGG
GCCTCCAGGCTGGGGTGGCCCAAATCAGGATTTACCCAGACGCCTCAGAGGCCCCCGGAAGGAG
GAGTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGCAGAGGACCAGAAGACTC
ACAGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGATACATTGACAACCAAGTAGT
GAGCACCAAAGGAGAGCGATTCAAAGATGTACGGAACCCCGAAACTGAGGAGATGAAGGCCACA
TACATCAACCTCAAGCCGGCCAGAAAGTACCGCTTCCACTGAGGCACTGGCTGGACTCTGCCAG
GCATCACAGATCCCAGAAGGATGCAGAAACCTTCCCGTCCACCCTACCCCTTCTCTATGCCTTT
GCTCTAGTGTTAATTTATTCTTGGAGCTTCCTTCAACAGCACAGTAAAGGTTGTCCAAGGAAGG
T

hide sequence

RefSeq Acc Id:

XM_039109080 ⟹ XP_038965008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,187 (-)	NCBI
mRatBN7.2	1	245,192,063 - 245,200,348 (-)	NCBI

RefSeq Acc Id:

XM_063287248 ⟹ XP_063143318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,142,016 (-)	NCBI

RefSeq Acc Id:

XM_063287257 ⟹ XP_063143327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,133,485 - 255,141,183 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073355	(Get FASTA)	NCBI Sequence Viewer
	XP_006231520	(Get FASTA)	NCBI Sequence Viewer
	XP_006231522	(Get FASTA)	NCBI Sequence Viewer
	XP_006231524	(Get FASTA)	NCBI Sequence Viewer
	XP_006231528	(Get FASTA)	NCBI Sequence Viewer
	XP_008758631	(Get FASTA)	NCBI Sequence Viewer
	XP_008758632	(Get FASTA)	NCBI Sequence Viewer
	XP_008758633	(Get FASTA)	NCBI Sequence Viewer
	XP_017444530	(Get FASTA)	NCBI Sequence Viewer
	XP_038965008	(Get FASTA)	NCBI Sequence Viewer
	XP_063143318	(Get FASTA)	NCBI Sequence Viewer
	XP_063143327	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A1L131	(Get FASTA)	NCBI Sequence Viewer
	AAI27519	(Get FASTA)	NCBI Sequence Viewer
	EDL94346	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026609.6
	ENSRNOP00000080530.1

RefSeq Acc Id:

NP_001073355 ⟸ NM_001079886

- UniProtKB:

A1L131 (UniProtKB/Swiss-Prot), A0A8I5ZQ90 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY
VPGFAHIHRGIIEDMVQTLSVQLSSARNKETLRRPEKLKEESRPPAATGNTQDEAAAAEEEQPG
VDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWGGPNQDLPRRLRGPRKEEL
KSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPETEEMKATYI
NLKPARKYRFH

hide sequence

RefSeq Acc Id:	XP_006231528 ⟸ XM_006231466
- Peptide Label:	isoform X2
- UniProtKB:	A1L131 (UniProtKB/Swiss-Prot), A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY VPGFAHIHRGIIEDMVQTLSVQLSSARNKETLRRPEKLKEESRPPAATGNTQDEAAAAEEEQPG VDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWGGPNQDLPRRLRGPRKEEL KSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPETEEMKATYI NLKPARKYRFH hide sequence

RefSeq Acc Id:	XP_006231522 ⟸ XM_006231460
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UK80 (UniProtKB/TrEMBL), A6JHM2 (UniProtKB/TrEMBL), A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY VPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQGHVPIFPETLRRPEKLKEESRPPA ATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWG GPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGE RFKDVRNPETEEMKATYINLKPARKYRFH hide sequence

RefSeq Acc Id:	XP_006231520 ⟸ XM_006231458
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UK80 (UniProtKB/TrEMBL), A6JHM2 (UniProtKB/TrEMBL), A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY VPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQGHVPIFPETLRRPEKLKEESRPPA ATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWG GPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGE RFKDVRNPETEEMKATYINLKPARKYRFH hide sequence

RefSeq Acc Id:	XP_006231524 ⟸ XM_006231462
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UK80 (UniProtKB/TrEMBL), A6JHM2 (UniProtKB/TrEMBL), A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY VPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQGHVPIFPETLRRPEKLKEESRPPA ATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWG GPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGE RFKDVRNPETEEMKATYINLKPARKYRFH hide sequence

RefSeq Acc Id:

XP_008758632 ⟸ XM_008760410

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPKCSGPLADNKGTSQSCLSTQNKNGRRRSRFKTRVYLKMRRETPPLYGQIALFKNGHHVILQK
GTALAPPLVSLLGLGGKNCTARDKSPAAPDGAGDFPSSLRRVSESIDTGGLDEVIFSYVLGVLE
DLGPSGPSEENFDMEAFIEMMEAYVPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQ
GHVPIFPETLRRPEKLKEESRPPAATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAK
ARGNLEEAVQMLIEGKEEGPPGWGGPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRP
MAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPETEEMKATYINLKPARKYRFH

hide sequence

RefSeq Acc Id:	XP_008758631 ⟸ XM_008760409
- Peptide Label:	isoform X2
- UniProtKB:	A1L131 (UniProtKB/Swiss-Prot), A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFIEMMEAY VPGFAHIHRGIIEDMVQTLSVQLSSARNKETLRRPEKLKEESRPPAATGNTQDEAAAAEEEQPG VDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLIEGKEEGPPGWGGPNQDLPRRLRGPRKEEL KSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPETEEMKATYI NLKPARKYRFH hide sequence

RefSeq Acc Id:	XP_008758633 ⟸ XM_008760411
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZQ90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRETPPLYGQIALFKNGHHVILQKGTALAPPLVSLLGLGGKNCTARDKSPAAPDGAGDFPSSL RRVSESIDTGRQSMELERIVSSALFAFVQTHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEEN FDMEAFIEMMEAYVPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQGHVPIFPETLR RPEKLKEESRPPAATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQM LIEGKEEGPPGWGGPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRPMAPKESFVA hide sequence

RefSeq Acc Id:

XP_017444530 ⟸ XM_017589041

- Peptide Label:

isoform X6

- Sequence:

show sequence

MEAFIEMMEAYVPGFAHIHRGIIEDMVQTLSVQLSSARNKENLHPQSSCVQGHVPIFPETLRRP
EKLKEESRPPAATGNTQDEAAAAEEEQPGVDVLLEVFPTCSMEQAQWVLAKARGNLEEAVQMLI
EGKEEGPPGWGGPNQDLPRRLRGPRKEELKSFILQKYMMVDRAEDQKTHRPMAPKEAPKKLIRY
IDNQVVSTKGERFKDVRNPETEEMKATYINLKPARKYRFH

hide sequence

RefSeq Acc Id:

ENSRNOP00000026609 ⟸ ENSRNOT00000026609

RefSeq Acc Id:	XP_038965008 ⟸ XM_039109080
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UK80 (UniProtKB/TrEMBL), A6JHM2 (UniProtKB/TrEMBL), A0A8I5ZQ90 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000080530 ⟸ ENSRNOT00000097448

RefSeq Acc Id:	XP_063143318 ⟸ XM_063287248
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063143327 ⟸ XM_063287257
- Peptide Label:	isoform X2

Protein Domains

CUE

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1L131-F1-model_v2	AlphaFold	A1L131	1-267	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690962

Promoter ID:

EPDNEW_R1487

Type:

initiation region

Name:

Cuedc2_1

Description:

CUE domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	266,086,388 - 266,086,448	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308096	AgrOrtholog
BioCyc Gene	G2FUF-55515	BioCyc
Ensembl Genes	ENSRNOG00000019574	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026609.7	UniProtKB/TrEMBL
	ENSRNOT00000097448.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7104051	IMAGE-MGC_LOAD
InterPro	CUE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CUE_CUED2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:294009	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156734	IMAGE-MGC_LOAD
NCBI Gene	294009	ENTREZGENE
PANTHER	CUE DOMAIN-CONTAINING PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12493	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cuedc2	PhenoGen
PROSITE	CUE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019574	RatGTEx
UniProt	A0A8I5ZQ90	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UK80	ENTREZGENE, UniProtKB/TrEMBL
	A1L131	ENTREZGENE
	A6JHM2	ENTREZGENE, UniProtKB/TrEMBL
	CUED2_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Cuedc2	CUE domain containing 2	Cuedc2_predicted	CUE domain containing 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cuedc2_predicted	CUE domain containing 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar