2610318N02Rikl (RIKEN cDNA 2610318N02 gene like)

Gene: 2610318N02Rikl (RIKEN cDNA 2610318N02 gene like) Rattus norvegicus

Analyze

Symbol:

2610318N02Rikl (Ensembl: RGD1308065)

Name:

RIKEN cDNA 2610318N02 gene like (Ensembl:hypothetical LOC287935)

RGD ID:

1308065

Description:

INTERACTS WITH acrylamide; bisphenol A; copper atom

Type:

protein-coding

RefSeq Status:

PREDICTED

Previously known as:

hypothetical LOC287935; hypothetical protein LOC287935; LOC287935; MGC156810; RGD1308065; uncharacterized protein LOC287935

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,383,363 - 97,400,092 (+)	NCBI		GRCr8
mRatBN7.2	11	83,879,178 - 83,895,877 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,882,350 - 83,895,873 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,606,073 - 92,619,425 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,267,215 - 85,280,567 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,320,796 - 84,334,148 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,128,785 - 88,145,488 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,131,960 - 88,145,481 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	91,184,507 - 91,198,150 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,887,782 - 85,901,307 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,925,829 - 85,941,907 (+)	NCBI
Celera	11	82,638,081 - 82,651,606 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

acrylamide (EXP)

bisphenol A (EXP)

copper atom (EXP)

copper(0) (EXP)

oxaliplatin (EXP)

topotecan (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

2610318N02Rikl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,383,363 - 97,400,092 (+)	NCBI		GRCr8
mRatBN7.2	11	83,879,178 - 83,895,877 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,882,350 - 83,895,873 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,606,073 - 92,619,425 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,267,215 - 85,280,567 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,320,796 - 84,334,148 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,128,785 - 88,145,488 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,131,960 - 88,145,481 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	91,184,507 - 91,198,150 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,887,782 - 85,901,307 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,925,829 - 85,941,907 (+)	NCBI
Celera	11	82,638,081 - 82,651,606 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

AP000553.5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	21,652,181 - 21,662,363 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	21,657,811 - 21,661,021 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	22,006,470 - 22,016,652 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	22	q11.21	NCBI
CHM1_1	22	22,011,775 - 22,016,845 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	22,065,672 - 22,075,837 (+)	NCBI		T2T-CHM13v2.0

2610318N02Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	16,931,262 - 16,943,080 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	16,931,262 - 16,943,031 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	17,113,398 - 17,125,202 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	17,113,398 - 17,125,167 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	17,113,491 - 17,125,199 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	17,026,961 - 17,038,669 (-)	NCBI		MGSCv36	mm8
Celera	16	17,686,191 - 17,697,900 (-)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	10.61	NCBI

LOC608641
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	30,926,728 - 30,937,738 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	30,883,909 - 30,894,936 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	32,332,442 - 32,343,477 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	26	30,381,746 - 30,392,778 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	30,005,444 - 30,016,552 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	31,095,419 - 31,106,559 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101971249
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	140,708,237 - 140,726,862 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936619	2,026,897 - 2,046,579 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100155534
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	50,234,153 - 50,246,308 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,684,666 - 53,696,767 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC101704519
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	1,203,517 - 1,215,405 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in 2610318N02Rikl
34 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	178
Count of miRNA genes:	139
Interacting mature miRNAs:	147
Transcripts:	ENSRNOT00000046664
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	56351424	86241447	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	60346590	86241447	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	66422148	86241447	Rat
1354593	Stl12	Serum triglyceride level QTL 12	3.36		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	11	66422148	86241447	Rat

Markers in Region

RH130221

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	83,895,694 - 83,895,848 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	88,145,303 - 88,145,456	NCBI	Rnor6.0
Rnor_5.0	11	91,197,968 - 91,198,121	UniSTS	Rnor5.0
RGSC_v3.4	11	85,901,125 - 85,901,278	UniSTS	RGSC3.4
Celera	11	82,651,424 - 82,651,577	UniSTS
RH 3.4 Map	11	730.93	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											2
Medium		12	13	12	1	12			20	12	17
Low	3	14	17	10	14	10	1	1	26	8	15	2	1
Below cutoff		5	18	12	4	12	4	6	22	11	7	7	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC127537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000046664 ⟹ ENSRNOP00000040753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,882,350 - 83,895,873 (+)	Ensembl
Rnor_6.0 Ensembl	11	88,131,960 - 88,145,481 (+)	Ensembl

RefSeq Acc Id:

NM_001077666 ⟹ NP_001071134

RefSeq Status:

PREDICTED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,386,567 - 97,400,092 (+)	NCBI
mRatBN7.2	11	83,882,350 - 83,895,877 (+)	NCBI
Rnor_6.0	11	88,131,960 - 88,145,485 (+)	NCBI
Rnor_5.0	11	91,184,507 - 91,198,150 (+)	NCBI
RGSC_v3.4	11	85,887,782 - 85,901,307 (+)	RGD
Celera	11	82,638,081 - 82,651,606 (+)	RGD

Sequence:

show sequence

GGGCGGGTAGTCTGGGGATCTGGAGTCTGCACTGCGGCTGTAGGGAGAGAGTGGGCAGCATCGG
CCCACCACCAGCAGTCCATTTCCAATGGAAGTCCTGGATGAGTTCGACAGCGAATTCCCCCTGA
GTGTGACCTTCTGCCAGCTCATTTCCGAGGATGACTTCGAGAGGCAAGCAGCTACCTACACAGA
GCGTGCGCTGCGACGCCTCTTCCGCTCCTTGGACCGCAACCCAGCGCTGGCCGAGAGGGTTGTG
CGGAAGGGCAAGCAGACCGAGATCGAGCAGCGCGGGCTCCTCTCCAACCTCTGGGCGAAGTTTG
TCTGCACTGTCCAGGGGGATCTAAACCAGTGCAACAGCATGGGGGCCCTGGAGATGCATCAGCG
CCTGGAGCAGCTGAAGAGGCGCATCCACCGTGTGCATCTGTACTCCCAGGATGCGAAGAAGAGA
AGGAGGAGGCCGAAACCAAAGAAACCAGATCCCATCTTTCGAGACCGGTCGACCTCCCCATGCC
TGCCACCAGCCCTATTACCACCACCACTGCTGCCGCCGCCACCGCCACAACCTGTCACCACCGT
GGCCTCTGTAGTGGCTGCGTCACCCTCTGTCTACACTATGCCCCGGGTCTTTGGCCCCTTCCCT
CCACTGTCTGGCAAGCCGATGGAGAAACTGGATATTTCAAGGTCTGAACTGAAATTAAACTGGA
ATGGTCTTTCATCAACGTCAAAGAGCCACATGGTTGATCTGACCCCCTTGGTCCTCAACCCCGG
AGGCTTCCATTTCTCATATTTGGCAGGAAACAGTGCACACAAGCTCCATTGCCCTGCCTTTCCC
TGGACGACAGCCTGTAGTGGGCCCACCAACACTGACAAGACGCCATCTCCTCCTGTGAAAGCCT
CCATCTTCACTCCGCCTGTTCTGCTCAAGTTCCAGCCCGTGCCCAGACCCAATGATGATTCAGA
GAATGACCCTGGCAACGCCGAGTCCACTCCTGCCAAGGAGAACCAATAATCTCTTCCCTACAGA
CCATGCCCCAGGACTGAGTAAAGTTCATCCTGGTGTTGAGCTTCCCACAGTTGTACGTTCTCTC
TGTTTTTCACCTGGACTATAGAGAGTTCAAGGATAGCCTGGACTCTATAGAAAAACCCTATTTC
AAACCTCATCCCCTCAGATATGGGCAGTGTGTGTTTAGATCAGTACCTTGCGATGGCCCCTCAT
TTGCACTGTAACAAGCTATTCCGTCATGCTTGATAGAATGGGATGAGAAATTCTGTTCTCCCTT
TCAGTGATTCAGAACCTCGGGGCTTCATTTTCCCTGAGTTACAAGTGTAGTATCTCCAAACACA
AGCCTAGTTTGGTGGGTGTTTTTACCTGGAGGGAAAATGAGTTTGTCAGTCAGTTTACAGCTTG
GTACTTGCCTGAGTTTCAAAAATATGATTCTCATCGTCACCCCATATGCTGGCCTGAGAACCTT
TCTCCACGTAAGATGTCAATCATTCCTGGACATTAGTGGATATACAGATTGAGTCATGGCTGAC
CATACCTCACTTGGAACTGTAGATAATAAAAATCAGAACATAAGCAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_008768856 ⟹ XP_008767078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,383,396 - 97,399,576 (+)	NCBI
mRatBN7.2	11	83,879,178 - 83,895,877 (+)	NCBI
Rnor_6.0	11	88,128,785 - 88,145,488 (+)	NCBI

Sequence:

show sequence

CAGAGGGTTAAAAATGGAGCGGAGGGAGAGAGGCCGCCACGAGGTGCCGGGTTGTCTGGATAGG
AAGGGGCCGCCGCAGACCTGGATCTTCCACTAATCTTCACCTTGTCCCCACGATGAGAACAAGA
GGCAGCATCGGCCCACCACCAGCAGTCCATTTCCAATGGAAGTCCTGGATGAGTTCGACAGCGA
ATTCCCCCTGAGTGTGACCTTCTGCCAGCTCATTTCCGAGGATGACTTCGAGAGGCAAGCAGCT
ACCTACACAGAGCGTGCGCTGCGACGCCTCTTCCGCTCCTTGGACCGCAACCCAGCGCTGGCCG
AGAGGGTTGTGCGGAAGGGCAAGCAGACCGAGATCGAGCAGCGCGGGCTCCTCTCCAACCTCTG
GGCGAAGTTTGTCTGCACTGTCCAGGGGGATCTAAACCAGTGCAACAGCATGGGGGCCCTGGAG
ATGCATCAGCGCCTGGAGCAGCTGAAGAGGCGCATCCACCGTGTGCATCTGTACTCCCAGGATG
CGAAGAAGAGAAGGAGGAGGCCGAAACCAAAGAAACCAGATCCCATCTTTCGAGACCGGTCGAC
CTCCCCATGCCTGCCACCAGCCCTATTACCACCACCACTGCTGCCGCCGCCACCGCCACAACCT
GTCACCACCGTGGCCTCTGTAGTGGCTGCGTCACCCTCTGTCTACACTATGCCCCGGGTCTTTG
GCCCCTTCCCTCCACTGTCTGGCAAGCCGATGGAGAAACTGGATATTTCAAGGTCTGAAGTGAA
ATTAAACTGGAATGGTCTTTCATCAACGTCAAAGAGCCACATGGTTGATCTGACCCCCTTGGTC
CTCAACCCCGGAGGCTTCCATTTCTCATATTTGGCAGGAAACAGTGCACACAAGCTCCATTGCC
CTGCCTTTCCCTGGACGACAGCCTGTAGTGGGCCCACCAACACTGACAAGACGCCATCTCCTCC
TGTGAAAGCCTCCATCTTCACTCCGCCTGTTCTGCTCAAGTTCCAGCCCGTGCCCAGACCCAAT
GATGATTCAGAGAATGACCCTGGCAACGCCGAGTCCACTCCTGCCAAGGAGAACCAATAATCTC
TTCCCTACAGACCATGCCCCAGGACTGAGTAAAGTTCATCCTGGTGTTGAGCTTCCCACAGTTG
TACGTTCTCTCTGTTTTTCACCTGGACTATAGAGAGTTCAAGGATAGCCTGGACTCTATAGAAA
AACCCTATTTCAAACCTCATCCCCTCAGATATGGGCAGTGTGTGTTTAGATCAGTACCTTGCGA
TGGCCCCTCATTTGCACTGTAACAAGCTATTCCGTCATGCTTGATAGAATGGGATGAGAAATTC
TGTTCTCCCTTTCAGTGATTCAGAACCTCGGGGCTTCATTTTCCCTGAGTTACAAGTGTAGTAT
CTCCAAACACAAGCCTAGTTTGGTGGGTGTTTTTACCTGGAGGGAAAATGAGTTTGTCAGTCAG
TTTACAGCTTGGTACTTGCCTGAGTTTCAAAAATATGATTCTCATCGTCACCCCATATGCTGGC
CTGAGAACCTTTCTCCACGTAAGATGTCAATCATTCCTGGACATTAGTGGATATACAGATTGAG
TCATGGCTGACCATACCTCACTTGGAACTGTAGATAATAAAAATCAGAACATAAGCAAAATTA

hide sequence

RefSeq Acc Id:

XM_063270320 ⟹ XP_063126390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,383,363 - 97,399,576 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001071134	(Get FASTA)	NCBI Sequence Viewer
	XP_008767078	(Get FASTA)	NCBI Sequence Viewer
	XP_063126390	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI27538	(Get FASTA)	NCBI Sequence Viewer
	EDL77875	(Get FASTA)	NCBI Sequence Viewer
	EDL77876	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040753
	ENSRNOP00000040753.3

RefSeq Acc Id:

NP_001071134 ⟸ NM_001077666

- UniProtKB:

A0JPQ2 (UniProtKB/TrEMBL), A6JSN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVLDEFDSEFPLSVTFCQLISEDDFERQAATYTERALRRLFRSLDRNPALAERVVRKGKQTEI
EQRGLLSNLWAKFVCTVQGDLNQCNSMGALEMHQRLEQLKRRIHRVHLYSQDAKKRRRRPKPKK
PDPIFRDRSTSPCLPPALLPPPLLPPPPPQPVTTVASVVAASPSVYTMPRVFGPFPPLSGKPME
KLDISRSELKLNWNGLSSTSKSHMVDLTPLVLNPGGFHFSYLAGNSAHKLHCPAFPWTTACSGP
TNTDKTPSPPVKASIFTPPVLLKFQPVPRPNDDSENDPGNAESTPAKENQ

hide sequence

RefSeq Acc Id:	XP_008767078 ⟸ XM_008768856
- Peptide Label:	isoform X1
- UniProtKB:	G3V9A1 (UniProtKB/TrEMBL), A6JSN2 (UniProtKB/TrEMBL), A6JSN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVLDEFDSEFPLSVTFCQLISEDDFERQAATYTERALRRLFRSLDRNPALAERVVRKGKQTEI EQRGLLSNLWAKFVCTVQGDLNQCNSMGALEMHQRLEQLKRRIHRVHLYSQDAKKRRRRPKPKK PDPIFRDRSTSPCLPPALLPPPLLPPPPPQPVTTVASVVAASPSVYTMPRVFGPFPPLSGKPME KLDISRSEVKLNWNGLSSTSKSHMVDLTPLVLNPGGFHFSYLAGNSAHKLHCPAFPWTTACSGP TNTDKTPSPPVKASIFTPPVLLKFQPVPRPNDDSENDPGNAESTPAKENQ hide sequence

RefSeq Acc Id:

ENSRNOP00000040753 ⟸ ENSRNOT00000046664

RefSeq Acc Id:	XP_063126390 ⟸ XM_063270320
- Peptide Label:	isoform X1
- UniProtKB:	A6JSN2 (UniProtKB/TrEMBL), G3V9A1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V9A1-F1-model_v2	AlphaFold	G3V9A1	1-306	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698337

Promoter ID:

EPDNEW_R8862

Type:

initiation region

Name:

RGD1308065_1

Description:

hypothetical LOC287935

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	88,131,936 - 88,131,996	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308065	AgrOrtholog
BioCyc Gene	G2FUF-20574	BioCyc
Ensembl Genes	ENSRNOG00000026918	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046664	ENTREZGENE
	ENSRNOT00000046664.4	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135417	IMAGE-MGC_LOAD
KEGG Report	rno:287935	UniProtKB/TrEMBL
MGC_CLONE	MGC:156810	IMAGE-MGC_LOAD
NCBI Gene	287935	ENTREZGENE
PANTHER	MCG131172, ISOFORM CRA_A	UniProtKB/TrEMBL
	RIKEN CDNA 2610318N02 GENE	UniProtKB/TrEMBL
PhenoGen	2610318N02Rikl	PhenoGen
RatGTEx	ENSRNOG00000026918	RatGTEx
UniProt	A0JPQ2	ENTREZGENE, UniProtKB/TrEMBL
	A6JSN1	ENTREZGENE, UniProtKB/TrEMBL
	A6JSN2	ENTREZGENE, UniProtKB/TrEMBL
	G3V9A1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	2610318N02Rikl	RIKEN cDNA 2610318N02 gene like	RGD1308065	hypothetical LOC287935	Symbol and Name Changed	1299863	APPROVED
2008-04-30	RGD1308065	hypothetical LOC287935	RGD1308065_predicted	hypothetical LOC287935 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308065_predicted	hypothetical LOC287935 (predicted)	LOC287935_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC287935_predicted	hypothetical LOC287935 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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