Dennd1a (DENN domain containing 1A) - Rat Genome Database

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Gene: Dennd1a (DENN domain containing 1A) Rattus norvegicus
Analyze
Symbol: Dennd1a
Name: DENN domain containing 1A
RGD ID: 1307927
Description: Predicted to enable several functions, including SH3 domain binding activity; guanyl-nucleotide exchange factor activity; and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling; endocytosis; and regulation of Rab protein signal transduction. Predicted to act upstream of or within synaptic vesicle endocytosis. Predicted to be located in several cellular components, including clathrin-coated vesicle membrane; dendrite; and neuronal cell body. Predicted to be active in clathrin-coated vesicle and cytosol. Orthologous to human DENND1A (DENN domain containing 1A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DENN domain-containing protein 1A; DENN/MADD domain containing 1A; LOC311913; RGD1307927; similar to RIKEN cDNA 6030446I19 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,974,502 - 42,461,816 (-)NCBIGRCr8
mRatBN7.2321,564,749 - 22,052,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,564,749 - 22,052,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,032,954 - 25,463,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,617,912 - 34,048,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,429,892 - 31,860,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,061,120 - 22,501,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,058,400 - 22,500,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0327,296,829 - 27,750,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4317,561,878 - 17,996,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1317,459,291 - 17,993,186 (-)NCBI
Celera319,998,559 - 20,428,895 (-)NCBICelera
Cytogenetic Map3q11-q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17182770   PMID:17762867   PMID:20159556   PMID:20937701  


Genomics

Comparative Map Data
Dennd1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,974,502 - 42,461,816 (-)NCBIGRCr8
mRatBN7.2321,564,749 - 22,052,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,564,749 - 22,052,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,032,954 - 25,463,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,617,912 - 34,048,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,429,892 - 31,860,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,061,120 - 22,501,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,058,400 - 22,500,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0327,296,829 - 27,750,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4317,561,878 - 17,996,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1317,459,291 - 17,993,186 (-)NCBI
Celera319,998,559 - 20,428,895 (-)NCBICelera
Cytogenetic Map3q11-q12NCBI
DENND1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389123,379,658 - 123,930,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9123,379,654 - 123,930,152 (-)EnsemblGRCh38hg38GRCh38
GRCh379126,141,937 - 126,692,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369125,181,754 - 125,732,238 (-)NCBINCBI36Build 36hg18NCBI36
Build 349123,243,423 - 123,771,971NCBI
Celera996,790,158 - 97,339,675 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef995,756,878 - 96,306,367 (-)NCBIHuRef
CHM1_19126,290,596 - 126,841,219 (-)NCBICHM1_1
T2T-CHM13v2.09135,577,391 - 136,128,012 (-)NCBIT2T-CHM13v2.0
Dennd1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,689,002 - 38,177,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,689,003 - 38,177,402 (-)EnsemblGRCm39 Ensembl
GRCm38237,798,990 - 38,287,410 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,798,991 - 38,287,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37237,654,510 - 38,142,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,621,000 - 38,109,356 (-)NCBIMGSCv36mm8
Celera237,484,305 - 37,845,059 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Dennd1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554194,146,456 - 4,608,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554194,120,095 - 4,605,002 (+)NCBIChiLan1.0ChiLan1.0
DENND1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21115,422,791 - 15,965,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1915,425,146 - 15,967,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0994,511,281 - 95,053,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19123,035,433 - 123,532,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9123,037,217 - 123,532,037 (-)Ensemblpanpan1.1panPan2
DENND1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,918,699 - 59,424,685 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,919,265 - 59,424,684 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha958,114,217 - 58,621,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,835,883 - 60,345,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,835,961 - 60,345,010 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1958,595,059 - 59,104,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,911,773 - 59,419,867 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0959,002,954 - 59,512,277 (+)NCBIUU_Cfam_GSD_1.0
Dennd1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,046,518 - 192,564,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,812,658 - 12,332,673 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,815,040 - 12,332,603 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DENND1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1264,300,994 - 264,823,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11264,300,989 - 264,823,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21298,049,860 - 298,440,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DENND1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11214,211,743 - 14,756,063 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1214,212,606 - 14,758,953 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660791,313,817 - 1,856,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dennd1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476011,043,348 - 11,575,531 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476011,043,099 - 11,576,600 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dennd1a
1650 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:617
Count of miRNA genes:261
Interacting mature miRNAs:308
Transcripts:ENSRNOT00000025443
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat

Markers in Region
RH138437  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2321,564,590 - 21,564,746 (+)MAPPERmRatBN7.2
Rnor_6.0322,060,962 - 22,061,117NCBIRnor6.0
Rnor_5.0327,296,671 - 27,296,826UniSTSRnor5.0
RGSC_v3.4317,561,720 - 17,561,875UniSTSRGSC3.4
Celera319,998,401 - 19,998,556UniSTS
RH 3.4 Map3209.1UniSTS
Cytogenetic Map3q11UniSTS
RH141980  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2321,649,351 - 21,649,538 (+)MAPPERmRatBN7.2
Rnor_6.0322,145,785 - 22,145,971NCBIRnor6.0
Rnor_5.0327,380,964 - 27,381,150UniSTSRnor5.0
RGSC_v3.4317,647,664 - 17,647,850UniSTSRGSC3.4
Celera320,083,063 - 20,083,249UniSTS
RH 3.4 Map3189.1UniSTS
Cytogenetic Map3q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 3 2 66 25 24 1
Low 3 43 55 39 16 39 8 11 8 10 17 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000025443   ⟹   ENSRNOP00000025443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 21,994,873 (-)Ensembl
Rnor_6.0 Ensembl322,061,126 - 22,500,765 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091747   ⟹   ENSRNOP00000073834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 21,955,055 (-)Ensembl
Rnor_6.0 Ensembl322,058,400 - 22,459,257 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096396   ⟹   ENSRNOP00000088926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 22,052,062 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097346   ⟹   ENSRNOP00000077456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 22,052,062 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108920   ⟹   ENSRNOP00000078866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 21,955,055 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116730   ⟹   ENSRNOP00000094401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl321,564,749 - 21,994,873 (-)Ensembl
RefSeq Acc Id: NM_001191747   ⟹   NP_001178676
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,502 - 42,404,603 (-)NCBI
mRatBN7.2321,564,749 - 21,994,873 (-)NCBI
Rnor_6.0322,061,120 - 22,500,765 (-)NCBI
Rnor_5.0327,296,829 - 27,750,936 (-)NCBI
Celera319,998,559 - 20,428,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105281   ⟹   XP_038961209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,786 (-)NCBI
mRatBN7.2321,564,765 - 22,052,052 (-)NCBI
RefSeq Acc Id: XM_039105285   ⟹   XP_038961213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,816 (-)NCBI
mRatBN7.2321,564,765 - 22,052,049 (-)NCBI
RefSeq Acc Id: XM_039105287   ⟹   XP_038961215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,816 (-)NCBI
mRatBN7.2321,564,765 - 22,052,047 (-)NCBI
RefSeq Acc Id: XM_039105289   ⟹   XP_038961217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,784 (-)NCBI
mRatBN7.2321,564,765 - 22,052,050 (-)NCBI
RefSeq Acc Id: XM_039105290   ⟹   XP_038961218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,783 (-)NCBI
mRatBN7.2321,564,765 - 22,052,049 (-)NCBI
RefSeq Acc Id: XM_039105292   ⟹   XP_038961220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,816 (-)NCBI
mRatBN7.2321,564,765 - 22,052,046 (-)NCBI
RefSeq Acc Id: XM_063283977   ⟹   XP_063140047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,785 (-)NCBI
RefSeq Acc Id: XM_063283978   ⟹   XP_063140048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,412,676 (-)NCBI
RefSeq Acc Id: XM_063283979   ⟹   XP_063140049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,412,673 (-)NCBI
RefSeq Acc Id: XM_063283980   ⟹   XP_063140050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,784 (-)NCBI
RefSeq Acc Id: XM_063283981   ⟹   XP_063140051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,434,131 (-)NCBI
RefSeq Acc Id: XM_063283982   ⟹   XP_063140052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,412,670 (-)NCBI
RefSeq Acc Id: XM_063283984   ⟹   XP_063140054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,813 (-)NCBI
RefSeq Acc Id: XM_063283985   ⟹   XP_063140055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,784 (-)NCBI
RefSeq Acc Id: XM_063283986   ⟹   XP_063140056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,784 (-)NCBI
RefSeq Acc Id: XM_063283987   ⟹   XP_063140057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,779 (-)NCBI
RefSeq Acc Id: XM_063283988   ⟹   XP_063140058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,813 (-)NCBI
RefSeq Acc Id: XM_063283989   ⟹   XP_063140059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,778 (-)NCBI
RefSeq Acc Id: XM_063283990   ⟹   XP_063140060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,461,586 (-)NCBI
RefSeq Acc Id: XM_063283991   ⟹   XP_063140061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,302,174 (-)NCBI
RefSeq Acc Id: XM_063283992   ⟹   XP_063140062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,188,900 (-)NCBI
RefSeq Acc Id: XM_063283993   ⟹   XP_063140063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,974,520 - 42,188,898 (-)NCBI
RefSeq Acc Id: XM_063283994   ⟹   XP_063140064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,006,481 - 42,412,688 (-)NCBI
RefSeq Acc Id: XM_063283995   ⟹   XP_063140065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,997,101 - 42,412,685 (-)NCBI
RefSeq Acc Id: XM_063283996   ⟹   XP_063140066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,027,286 - 42,412,692 (-)NCBI
RefSeq Acc Id: XM_063283997   ⟹   XP_063140067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,027,286 - 42,412,682 (-)NCBI
RefSeq Acc Id: XM_063283998   ⟹   XP_063140068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,006,481 - 42,461,789 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001178676 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961217 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961220 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140047 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140048 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140049 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140050 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140051 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140052 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140054 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140055 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140056 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140057 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140058 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140059 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140060 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140061 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140062 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140063 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140068 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66562 (Get FASTA)   NCBI Sequence Viewer  
  EDM00519 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025443
  ENSRNOP00000025443.5
  ENSRNOP00000073834.1
  ENSRNOP00000077456
  ENSRNOP00000077456.1
  ENSRNOP00000078866.1
  ENSRNOP00000088926.1
  ENSRNOP00000094401.1
RefSeq Acc Id: NP_001178676   ⟸   NM_001191747
- UniProtKB: A0A8I6GKQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025443   ⟸   ENSRNOT00000025443
RefSeq Acc Id: ENSRNOP00000073834   ⟸   ENSRNOT00000091747
RefSeq Acc Id: XP_038961209   ⟸   XM_039105281
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961217   ⟸   XM_039105289
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961218   ⟸   XM_039105290
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961213   ⟸   XM_039105285
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961215   ⟸   XM_039105287
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZKB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961220   ⟸   XM_039105292
- Peptide Label: isoform X14
- UniProtKB: A0A8I6GKQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088926   ⟸   ENSRNOT00000096396
RefSeq Acc Id: ENSRNOP00000077456   ⟸   ENSRNOT00000097346
RefSeq Acc Id: ENSRNOP00000094401   ⟸   ENSRNOT00000116730
RefSeq Acc Id: ENSRNOP00000078866   ⟸   ENSRNOT00000108920
RefSeq Acc Id: XP_063140058   ⟸   XM_063283988
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A7I2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140054   ⟸   XM_063283984
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063140047   ⟸   XM_063283977
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140055   ⟸   XM_063283985
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063140056   ⟸   XM_063283986
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063140050   ⟸   XM_063283980
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140057   ⟸   XM_063283987
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063140059   ⟸   XM_063283989
- Peptide Label: isoform X18
- UniProtKB: F1M241 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140060   ⟸   XM_063283990
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063140051   ⟸   XM_063283981
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140048   ⟸   XM_063283978
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140049   ⟸   XM_063283979
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063140052   ⟸   XM_063283982
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063140061   ⟸   XM_063283991
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063140062   ⟸   XM_063283992
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063140063   ⟸   XM_063283993
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063140065   ⟸   XM_063283995
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063140068   ⟸   XM_063283998
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063140064   ⟸   XM_063283994
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063140066   ⟸   XM_063283996
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063140067   ⟸   XM_063283997
- Peptide Label: isoform X25
Protein Domains
uDENN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K6J1-F1-model_v2 AlphaFold A0A0G2K6J1 1-1093 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307927 AgrOrtholog
BioCyc Gene G2FUF-49916 BioCyc
Ensembl Genes ENSRNOG00000010526 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025443 ENTREZGENE
  ENSRNOT00000025443.5 UniProtKB/TrEMBL
  ENSRNOT00000091747.2 UniProtKB/TrEMBL
  ENSRNOT00000096396.1 UniProtKB/TrEMBL
  ENSRNOT00000097346.1 UniProtKB/TrEMBL
  ENSRNOT00000108920.1 UniProtKB/TrEMBL
  ENSRNOT00000116730.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.200 UniProtKB/TrEMBL
  3.40.50.11500 UniProtKB/TrEMBL
  6.10.140.1000 UniProtKB/TrEMBL
InterPro dDENN_dom UniProtKB/TrEMBL
  DENN_C UniProtKB/TrEMBL
  DENN_dom UniProtKB/TrEMBL
  DENND1A/B/C UniProtKB/TrEMBL
  Tripartite_DENN UniProtKB/TrEMBL
  uDENN_dom UniProtKB/TrEMBL
NCBI Gene 311913 ENTREZGENE
PANTHER DENN DOMAIN-CONTAINING PROTEIN 1A UniProtKB/TrEMBL
  PTHR13196 UniProtKB/TrEMBL
Pfam dDENN UniProtKB/TrEMBL
  DENN UniProtKB/TrEMBL
  uDENN UniProtKB/TrEMBL
PhenoGen Dennd1a PhenoGen
PROSITE DENN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010526 RatGTEx
SMART dDENN UniProtKB/TrEMBL
  DENN UniProtKB/TrEMBL
  uDENN UniProtKB/TrEMBL
UniProt A0A0G2K6J1_RAT UniProtKB/TrEMBL
  A0A8I5ZKB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLU1_RAT UniProtKB/TrEMBL
  A0A8I6A7I2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKQ9 ENTREZGENE, UniProtKB/TrEMBL
  A6JEU1_RAT UniProtKB/TrEMBL
  B2GV78_RAT UniProtKB/TrEMBL
  F1M241 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Dennd1a  DENN domain containing 1A  Dennd1a  DENN/MADD domain containing 1A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Dennd1a  DENN/MADD domain containing 1A  RGD1307927_predicted  similar to RIKEN cDNA 6030446I19 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1307927_predicted  similar to RIKEN cDNA 6030446I19 gene (predicted)  LOC311913_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311913_predicted  similar to RIKEN cDNA 6030446I19 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL