Mgat4c (MGAT4 family, member C) - Rat Genome Database

Name: Mgat4c
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Mgat4c (MGAT4 family, member C) Rattus norvegicus

Analyze

Symbol:

Mgat4c

Name:

MGAT4 family, member C

RGD ID:

1307871

Description:

Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Orthologous to human MGAT4C (MGAT4 family member C); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C; LOC299756; mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative); RGD1307871; similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MGAT4C (MGAT4 family member C)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Mgat4c (MGAT4 family, member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MGAT4C (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mgat4c (MGAT4 family member C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LGALS12 (galectin 12)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Mgat4c (MGAT4 family, member C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MGAT4C (MGAT4 family member C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mgat4c (mgat4 family member C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17173	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	mgat4c	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Allele / Splice:

Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Genetic Models:

F344-Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	38,596,117 - 39,361,103 (+)	NCBI		GRCr8
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	39,180,021 - 39,401,146 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	41,383,112 - 41,604,239 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	41,158,061 - 41,379,194 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	40,364,873 - 40,402,911 (+)	NCBI
Celera	7	34,230,724 - 34,444,124 (+)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

indinavir (ISO)

lamivudine (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

paraquat (ISO)

pirinixic acid (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

saquinavir (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

triclosan (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

protein N-linked glycosylation (IBA)

Molecular Function

acetylglucosaminyltransferase activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

N-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Genomics

Comparative Map Data

Mgat4c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	38,596,117 - 39,361,103 (+)	NCBI		GRCr8
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	39,180,021 - 39,401,146 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	41,383,112 - 41,604,239 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	41,158,061 - 41,379,194 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	40,364,873 - 40,402,911 (+)	NCBI
Celera	7	34,230,724 - 34,444,124 (+)	NCBI		Celera
Cytogenetic Map	7	q21	NCBI

MGAT4C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	85,955,667 - 86,839,000 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	85,955,666 - 86,838,904 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	86,349,446 - 87,232,777 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	84,896,655 - 85,756,776 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	86,035,834 - 86,903,303 (-)	NCBI		Celera
Cytogenetic Map	12	q21.31-q21.32	NCBI
HuRef	12	83,429,982 - 84,296,311 (-)	NCBI		HuRef
CHM1_1	12	86,338,018 - 87,197,963 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	85,936,518 - 86,820,003 (-)	NCBI		T2T-CHM13v2.0

Mgat4c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	101,517,348 - 102,227,712 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	101,517,348 - 102,227,330 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	101,681,487 - 102,391,851 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	101,681,487 - 102,391,469 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	101,621,492 - 101,854,103 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	101,804,125 - 101,820,001 (+)	NCBI		MGSCv36	mm8
Celera	10	104,090,759 - 104,325,697 (+)	NCBI		Celera
Cytogenetic Map	10	D1	NCBI
cM Map	10	52.92	NCBI

Mgat4c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	23,836,790 - 23,863,533 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	23,839,724 - 23,912,418 (-)	NCBI	ChiLan1.0	ChiLan1.0

MGAT4C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	94,018,154 - 94,878,810 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	94,014,552 - 94,875,224 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	83,506,921 - 84,380,683 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	86,739,352 - 87,211,044 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	86,745,263 - 86,793,902 (-)	Ensembl	panpan1.1		panPan2

MGAT4C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	27,461,658 - 28,007,636 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	27,462,533 - 27,490,566 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	27,905,808 - 28,452,779 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	28,076,141 - 28,621,239 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	28,078,827 - 28,106,862 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	27,428,452 - 27,975,732 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	27,469,066 - 28,016,877 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	27,758,519 - 28,306,843 (-)	NCBI		UU_Cfam_GSD_1.0

Mgat4c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	32,395,087 - 32,829,837 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	3,410,481 - 3,420,442 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	3,410,481 - 3,476,061 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MGAT4C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	96,180,960 - 96,191,375 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	95,463,779 - 96,194,023 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	100,997,528 - 101,009,732 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MGAT4C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	81,372,233 - 82,235,001 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	81,373,536 - 81,383,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	163,053,830 - 163,950,828 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mgat4c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624837	5,141,369 - 5,153,627 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624837	5,142,314 - 5,930,816 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mgat4c
5813 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	125
Count of miRNA genes:	88
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000005523
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	19654317	49753746	Rat
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	19654317	49753746	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat

Markers in Region

D7Rat84

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	43,998,792 - 43,999,020	NCBI	Rnor6.0
Celera	7	34,419,856 - 34,420,085	UniSTS
RH 3.4 Map	7	329.8	RGD
RH 3.4 Map	7	329.8	UniSTS
RH 2.0 Map	7	278.5	RGD
SHRSP x BN Map	7	23.15	RGD
FHH x ACI Map	7	19.09	RGD
Cytogenetic Map	7	q13	UniSTS

Genetic Models

This gene Mgat4c is modified in the following models/strains:

F344-Mgat4c^{Tn(sb-T2/Bart3)2.244Mcwi}

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									18		5
Low			11	6	2	6			50	8	16
Below cutoff	2	14	7	4	5	4	3	4	2	14	14	3	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000005523 ⟹ ENSRNOP00000005523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	37,260,321 - 37,474,571 (+)	Ensembl
Rnor_6.0 Ensembl	7	44,009,069 - 44,024,456 (+)	Ensembl

RefSeq Acc Id:

NM_001135814 ⟹ NP_001129286

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,867 - 39,361,103 (+)	NCBI
mRatBN7.2	7	37,260,321 - 37,474,571 (+)	NCBI
Rnor_6.0	7	43,800,452 - 44,024,152 (+)	NCBI
Rnor_5.0	7	43,829,446 - 44,052,611 (+)	NCBI
RGSC_v3.4	7	40,171,454 - 40,383,441 (+)	RGD
Celera	7	34,230,724 - 34,444,124 (+)	RGD

Sequence:

show sequence

GTGACATCATCTTCCAGTCGGAGTACACAGAACAGCTGAGGCAGCGTTCAGTTTCAGCCCGAGT
GCTATTATGATGGATGTTTACATGTCTTCATTGAGAGCCAATTATCTTGCTTTTGTGTGAGGCC
CAAGGATCACTCATGCTGCCAGGCTGCACAGAGCACTGTTGGATCTAGCTGAACGAATTGTTTT
TCTCTGTCTCCGGGTGACAATAGCTTTTATACAGGACAGATTATGTCAGCTTCTTTCTTAAGGA
GAGGATGTTTAAATTTTATCAAATGAAATATATTTTTCAAATATTGGATAAAATGAGATGCTTG
CGAAAACGTTCTACAGTGTCATTCTTGGGAGTCCTTGTTGTTTTTCTTCTATTCATGAATGTGT
TCATTGAAGATAGCTATGTTCTGGAAGGCGACAAGCAACTTATAAGGGAAACATCAACACATCA
ACTTAATTCTGAACGCTATGTTCATACCTTCAAGGATTTATCAAACTTCTCAGGAACTATAAAT
GTCACCTATCGCTACCTGGCTGCCACACCTTTACAGAGAAAGCGATATCTCACAATTGGACTTT
CATCAGTAAAACGGAAAAAAGGAAATTATTTACTTGAGACAATCAAGTCAATTTTTGAACAGTC
CAGCTATGAAGAACTAAAAGAAATTTCAGTTGTAGTGCATCTAGCAGACTTTAATTCATCATGG
CGTGATGCCATGGTCCAAGATATTACACAGAAATTTGCCCATCATATTATTGCAGGAAGATTAA
TGGTTATACATGCTCCTGAAGAATATTATCCAGTTCTGGATGGTCTTAAAAGAAATTACAATGA
CCCAGAAGATAGAGTCAGATTTCGCTCCAAGCAAAATGTAGATTATGCTTTTCTGCTAAATTTC
TGTGCCAATACTTCTGACTATTATGTAATGCTTGAAGATGATGTCCGGTGTTCCAGAAATTTCT
TAACTGCCATCAAGAAAGTTATCGCATCCTTAGAAGGAACATACTGGGTAACTCTTGAGTTCTC
TAAACTTGGCTACATTGGAAAACTCTATCATTCTCATGATCTCCCACGTCTGGCCCATTTCTTA
TTAATGTTTTATCAAGAAATGCCTTGTGACTGGCTATTGACTCATTTCCGAGGGCTGCTGGCTC
AGAAAAATGTGATTCGATTTAAACCTTCTCTCTTTCAGCACATGGGGTATTATTCATCCTATAA
AGGAACGGAGAATAAACTGAAGGATGATGACTTTGAAGAGGAGTCATTTGACATCCCTGATAAC
CCACCAGCAAGTCTCTACACCAACATGAATGTCTTTGAAAATTACGAAGCAAGCAAGGCTTACA
GTAGTGTTGATGAGTACTTTTGGGGAAAGCCACCTTCAACGGGGGATACGTTTGTTATTGTATT
TGAGAATCCTATTAAAATTAAAAAAATTAAGGTGAATACTGGAACAGAAGACCGGCAGAATGAC
ATTTTGCATCACGGAGCCCTAGATGTTGGGGAAAAACTCATTTTTAGCAAACAAATAAGACAAT
GTGAAACTTACTTAAGACTAGGGGAATTCAAAAATGGAAACTTTGAAATGTCAGATGTGAATCA
AAAAATTCCCTTTGACATACATTGCATGAGGATATGTGTCACCAAAACTCAGAAAGAATGGTTG
ATAATTAGGAGCATCAGCATTTGGACTTCCTAGCCAAGTAAATCAGTAGATTGAGTTTCTGAAA
CAGGTCTTCCTGTTTCAATTTTTGCTATTCCCTCTTTTGCTACTTTTGTCTTTTGGAGGGTAAC
TAATTGGTGTGCTGTGGCACAAGAACGTTGAGTCATCTCAGCAGTTTTGATTGTAGTTTTACTA
AGCACATCTTTGTAATTAATTTCACGTTTCAGGCTGAATATCATTCTGTAGTTAAAACTGATTT
CACTCATTCATTTAAATGTTCATAGTTCCAAATTTCAACTCATTGTGCAAAGAGTTGATAATTT
ATTTTATGTTTAGAAAGATTCTTAGTAAGAATATATGAGAATATGCAGATTGGTTGCCATCATA
AAATGGGATACTTTTTCTTATAAATTTAGGCTTTCACTGACTGATGTATTTCTACAATTAATAC
CTCCTCATGGAAGTGGTGTCTTTACAACAGATTAGTTGTGTAAGTAGAGCTTTGAAAAAACAGA
CTTAAAAGTCATCATTCCTTTGGTTATTTCTATGAAAAGGAACATTGCTCATTGTTTTAAAACA
TTTAATTGAGCACATGTTAATACAATTCCCATGAGAATAAGTCTATTTCTAATTTCCCTTTTGA
AAATATATAGTTAAGCTCAATATTTTAAGGTTATATTGGATATCTGTAATTAATAGAGGAAGAG
AGATGGCTTACCGTTAGTTCATTCATACATTTTCAGTATATGTAGAAAAAACTGAAATTGATGT
TTTTACTTTTTGTATTAAAACTCATGTGATTAAAATTGTTGTAATTTATCATATTTGGGGAAGA
TTAAATGGCTGTCTTATGTGGGAGAAAAGTAAAATTTAAAGTAACTAAGTTTAGGTTTTT

hide sequence

RefSeq Acc Id:

XM_017594737 ⟹ XP_017450226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,566 - 37,485,810 (+)	NCBI
Rnor_6.0	7	43,249,369 - 44,024,278 (+)	NCBI

Sequence:

show sequence

TGCAGACTGCAGATGAGAGAGTCTGGAGCAGAGACAGTTTTAACTTAGCCATTCCTAATTTATC
TCAAGCGTTTTCAATTCATCTTCACTGCTCTGTGCACACAGGAACAGCAGATTGCCATCCCTGG
GGAACAAAACGCAACCGGGGATCTAGAGAGCTGTCACATTCCAAGAAATATTTAAATTGTGCTG
GTTTTCTTCTGGAGAGCTGAGCCCAGGGAATGAAAACTCTCCATCCAGTCGTAGCTTTGCGGGC
AATAGATCAGAGGATATTGCCAGGCTCCTAATGGATTATTGTTATCGGGCAGGTTTTCTCTGAA
GAGTCCTGATGTCTCCCAGATCCTAGGCTAATATCCAAAGGGATTGGAGGTCAGATCAGTTGTA
CGCACAAAGCCACTTTGGATCTGTCTCCAAAACGGGAACTCCCTTCACAGAATGCCACAACAAG
GTTGAAGCAACAGTCCGTCTGGGTGACAATAGCTTTTATACAGGACAGATTATGTCAGCTTCTT
TCTTAAGGAGAGGATGTTTAAATTTTATCAAATGAAATATATTTTTCAAATATTGGATAAAATG
AGATGCTTGCGAAAACGTTCTACAGTGTCATTCTTGGGAGTCCTTGTTGTTTTTCTTCTATTCA
TGAATGTGTTCATTGAAGATAGCTATGTTCTGGAAGGCGACAAGCAACTTATAAGGGAAACATC
AACACATCAACTTAATTCTGAACGCTATGTTCATACCTTCAAGGATTTATCAAGNNACTTCTCA
GGAACTATAAATGTCACCTATCGCTACCTGGCTGCCACACCTTTACAGAGAAAGCGATATCTCA
CAATTGGACTTTCATCAGTAAAACGGAAAAAAGGAAATTATTTACTTGAGACAATCAAGTCAAT
TTTTGAACAGTCCAGCTATGAAGAACTAAAAGAAATTTCAGTTGTAGTGCATCTAGCAGACTTT
AATTCATCATGGCGTGATGCCATGGTCCAAGATATTACACAGAAATTTGCCCATCATATTATTG
CAGGAAGATTAATGGTTATACATGCTCCTGAAGAATATTATCCAGTTCTGGATGGTCTTAAAAG
AAATTACAATGACCCAGAAGATAGAGTCAGATTTCGCTCCAAGCAAAATGTAGATTATGCTTTT
CTGCTAAATTTCTGTGCCAATACTTCTGACTATTATGTAATGCTTGAAGATGATGTCCGGTGTT
CCAGAAATTTCTTAACTGCCATCAAGAAAGTTATCGCATCCTTAGAAGGAACATACTGGGTAAC
TCTTGAGTTCTCTAAACTTGGCTACATTGGAAAACTCTATCATTCTCATGATCTCCCACGTCTG
GCCCATTTCTTATTAATGTTTTATCAAGAAATGCCTTGTGACTGGCTATTGACTCATTTCCGAG
GGCTGCTGGCTCAGAAAAATGTGATTCGATTTAAACCTTCTCTCTTTCAGCACATGGGGTATTA
TTCATCCTATAAAGGAACGGAGAATAAACTGAAGGATGATGACTTTGAAGAGGAGTCATTTGAC
ATCCCTGATAACCCACCAGCAAGTCTCTACACCAACATGAATGTCTTTGAAAATTACGAAGCAA
GCAAGGCTTACAGTAGTGTTGATGAGTACTTTTGGGGAAAGCCACCTTCAACGGGGGATACGTT
TGTTATTGTATTTGAGAATCCTATTAAAATTAAAAAAATTAAGGTGAATACTGGAACAGAAGAC
CGGCAGAATGACATTTTGCATCACGGAGCCCTAGATGTTGGGGAAAAACTCATTTTTAGCAAAC
AAATAAGACAATGTGAAACTTACTTAAGACTAGGGGAATTCAAAAATGGAAACTTTGAAATGTC
AGATGTGAATCAAAAAATTCCCTTTGACATACATTGCATGAGGATATGTGTCACCAAAACTCAG
AAAGAATGGTTGATAATTAGGAGCATCAGCATTTGGACTTCCTAGCCAAGTAAATCAGTAGATT
GAGTTTCTGAAACAGGTCTTCCTGTTTCAATTTTTGCTATTCCCTCTTTTGCTACTTTTGTCTT
TTGGAGGGTAACTAATTGGTGTGCTGTGGCACAAGAACGTTGAGTCATCTCAGCAGTTTTGATT
GTAGTTTTACTAAGCACATCTTTGTAATTAATTTCACGTTTCAGGCTGAATATCATTCTGTAGT
TAAAACTGATTTCACTCATTCATTTAAATGTTCATAGTTCCAAATTTCAACTCATTGTGCAAAG
AGTTGATAATTTATTTTATGTTTAGAAAGATTCTTAGTAAGAATATATGAGAATATGCAGATTG
GTTGCCATCATAAAATGGGATACTTTTTCTTATAAATTTAGGCTTTCACTGACTGATGTATTTC
TACAATTAATACCTCCTCATGGAAGTGGTGTCTTTACAACAGATTAGTTGTGTAAGTAGAGCTT
TGAAAAAACAGACTTAAAAGTCATCATTCCTTTGGTTATTTCTATGAAAAGGAACATTGCTCAT
TGTTTTAAAACATTTAATTGAGCACATGTTAATACAATTCCCATGAGAATAAGTCTATTTCTAA
TTTCCCTTTTGAAAATATATAGTTAAGCTCAATATTTTAAGGTTATATTGGATATCTGTAATTA
ATAGAGGAAGAGAGATGGCTTACCGTTAGTTCATTCATACATTTTCAGTATATGTAGAAAAAAC
TGAAATTGATGTTTTTACTTTTTGTATTAAAACTCATGTGATTAAAATTGTTGTAATTTATCAT
ATTTGGGGAAGATTAAATGGCTGTCTTATGTGGGAGAAAAGTAAAATTTAAAGTAACTAAGTTT
AGGTTTTTGTTGTTTTGTTTATTTTTTTGTCTATTGTTAATGAGTTATTTCGTAACAAATCCAA
AATGAAGAATTTGTTTGGTGTTGTTGTTCCGATTACCAGATAACCCTCTTTACTCTTTATGAAA
AAATTC

hide sequence

RefSeq Acc Id:

XM_039078699 ⟹ XP_038934627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,566 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_039078700 ⟹ XP_038934628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,834,528 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,952,397 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_039078702 ⟹ XP_038934630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI
mRatBN7.2	7	36,709,564 - 37,485,810 (+)	NCBI

RefSeq Acc Id:

XM_063263206 ⟹ XP_063119276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,934 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263207 ⟹ XP_063119277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,921,793 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263208 ⟹ XP_063119278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263209 ⟹ XP_063119279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263210 ⟹ XP_063119280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263211 ⟹ XP_063119281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263212 ⟹ XP_063119282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,119 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263214 ⟹ XP_063119284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,921,793 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263215 ⟹ XP_063119285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,834,528 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263216 ⟹ XP_063119286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	38,596,117 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263217 ⟹ XP_063119287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,932 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263218 ⟹ XP_063119288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,146,934 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263219 ⟹ XP_063119289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,354,127 - 39,361,088 (+)	NCBI

RefSeq Acc Id:

XM_063263220 ⟹ XP_063119290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	39,354,126 - 39,361,088 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129286	(Get FASTA)	NCBI Sequence Viewer
	XP_017450226	(Get FASTA)	NCBI Sequence Viewer
	XP_038934627	(Get FASTA)	NCBI Sequence Viewer
	XP_038934628	(Get FASTA)	NCBI Sequence Viewer
	XP_038934630	(Get FASTA)	NCBI Sequence Viewer
	XP_063119276	(Get FASTA)	NCBI Sequence Viewer
	XP_063119277	(Get FASTA)	NCBI Sequence Viewer
	XP_063119278	(Get FASTA)	NCBI Sequence Viewer
	XP_063119279	(Get FASTA)	NCBI Sequence Viewer
	XP_063119280	(Get FASTA)	NCBI Sequence Viewer
	XP_063119281	(Get FASTA)	NCBI Sequence Viewer
	XP_063119282	(Get FASTA)	NCBI Sequence Viewer
	XP_063119284	(Get FASTA)	NCBI Sequence Viewer
	XP_063119285	(Get FASTA)	NCBI Sequence Viewer
	XP_063119286	(Get FASTA)	NCBI Sequence Viewer
	XP_063119287	(Get FASTA)	NCBI Sequence Viewer
	XP_063119288	(Get FASTA)	NCBI Sequence Viewer
	XP_063119289	(Get FASTA)	NCBI Sequence Viewer
	XP_063119290	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16792	(Get FASTA)	NCBI Sequence Viewer
	EDM16793	(Get FASTA)	NCBI Sequence Viewer
	EDM16794	(Get FASTA)	NCBI Sequence Viewer
	EDM16795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005523
	ENSRNOP00000005523.8

RefSeq Acc Id:

NP_001129286 ⟸ NM_001135814

- UniProtKB:

D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNVFIEDSYVLEGDKQLIRETSTHQL
NSERYVHTFKDLSNFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSS
YEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDP
EDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSK
LGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKG
TENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDTFVIVFE
NPIKIKKIKVNTGTEDRQNDILHHGALDVGEKLIFSKQIRQCETYLRLGEFKNGNFEMSDVNQK
IPFDIHCMRICVTKTQKEWLIIRSISIWTS

hide sequence

RefSeq Acc Id:	XP_017450226 ⟸ XM_017594737
- Peptide Label:	isoform X1
- UniProtKB:	D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNVFIEDSYVLEGDKQLIRETSTHQL NSERYVHTFKDLSXXFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQS SYEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYND PEDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFS KLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYK GTENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDTFVIVF ENPIKIKKIKVNTGTEDRQNDILHHGALDVGEKLIFSKQIRQCETYLRLGEFKNGNFEMSDVNQ KIPFDIHCMRICVTKTQKEWLIIRSISIWTS hide sequence

RefSeq Acc Id:

ENSRNOP00000005523 ⟸ ENSRNOT00000005523

RefSeq Acc Id:	XP_038934630 ⟸ XM_039078702
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934627 ⟸ XM_039078699
- Peptide Label:	isoform X1
- UniProtKB:	D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934628 ⟸ XM_039078700
- Peptide Label:	isoform X1
- UniProtKB:	D3ZEV3 (UniProtKB/TrEMBL), A6IGA6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119286 ⟸ XM_063263216
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119282 ⟸ XM_063263212
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119281 ⟸ XM_063263211
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119280 ⟸ XM_063263210
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119279 ⟸ XM_063263209
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119278 ⟸ XM_063263208
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119285 ⟸ XM_063263215
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119284 ⟸ XM_063263214
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119277 ⟸ XM_063263207
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119287 ⟸ XM_063263217
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119288 ⟸ XM_063263218
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119276 ⟸ XM_063263206
- Peptide Label:	isoform X1
- UniProtKB:	A6IGA6 (UniProtKB/TrEMBL), D3ZEV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119290 ⟸ XM_063263220
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119289 ⟸ XM_063263219
- Peptide Label:	isoform X3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307871	AgrOrtholog
BioCyc Gene	G2FUF-34228	BioCyc
Ensembl Genes	ENSRNOG00000004149	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005523	ENTREZGENE
	ENSRNOT00000005523.8	UniProtKB/TrEMBL
InterPro	Glyco_transf_54	UniProtKB/TrEMBL
KEGG Report	rno:299756	UniProtKB/TrEMBL
NCBI Gene	299756	ENTREZGENE
PANTHER	ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE C	UniProtKB/TrEMBL
	Glyco_transf_54	UniProtKB/TrEMBL
Pfam	Glyco_transf_54	UniProtKB/TrEMBL
PhenoGen	Mgat4c	PhenoGen
RatGTEx	ENSRNOG00000004149	RatGTEx
UniProt	A6IGA6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZEV3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Mgat4c	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	Mgat4c_predicted	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Mgat4c_predicted	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (predicted)	RGD1307871_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307871_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)	LOC299756_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC299756_predicted	similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylgluco (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)