Fbxo36 (F-box protein 36) - Rat Genome Database

Name: Fbxo36
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Fbxo36 (F-box protein 36) Rattus norvegicus

Analyze

Symbol:

Fbxo36

Name:

F-box protein 36

RGD ID:

1307870

Description:

Orthologous to human FBXO36 (F-box protein 36); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

F-box only protein 36; LOC363268

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO36 (F-box protein 36)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fbxo36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo36 (F-box protein 36)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FBXO36 (F-box protein 36)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fbxo36 (F-box protein 36)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fbxo36b (F-box protein 36b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	fbxo36a (F-box protein 36a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	fbxo36	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	93,490,618 - 93,555,298 (+)	NCBI		GRCr8
mRatBN7.2	9	86,042,522 - 86,107,220 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	86,040,862 - 86,107,229 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	94,458,732 - 94,524,071 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	99,587,213 - 99,652,565 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	97,971,515 - 98,035,964 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	92,435,872 - 92,500,765 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	92,435,896 - 92,500,765 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	92,168,447 - 92,231,811 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	84,085,586 - 84,164,927 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	84,269,026 - 84,348,355 (+)	NCBI
Celera	9	83,466,342 - 83,530,596 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

cisplatin (ISO)

Cuprizon (EXP)

doxorubicin (ISO)

fenofibrate (ISO)

folic acid (ISO)

furan (EXP)

inulin (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resorcinol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

SCF ubiquitin ligase complex (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Fbxo36
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	93,490,618 - 93,555,298 (+)	NCBI		GRCr8
mRatBN7.2	9	86,042,522 - 86,107,220 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	86,040,862 - 86,107,229 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	94,458,732 - 94,524,071 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	99,587,213 - 99,652,565 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	97,971,515 - 98,035,964 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	92,435,872 - 92,500,765 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	92,435,896 - 92,500,765 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	92,168,447 - 92,231,811 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	84,085,586 - 84,164,927 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	84,269,026 - 84,348,355 (+)	NCBI
Celera	9	83,466,342 - 83,530,596 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

FBXO36
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	229,922,503 - 230,013,119 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	229,922,302 - 230,013,119 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	230,787,219 - 230,877,835 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	230,495,451 - 230,586,069 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	230,612,718 - 230,701,430	NCBI
Celera	2	224,563,142 - 224,653,752 (+)	NCBI		Celera
Cytogenetic Map	2	q36.3	NCBI
HuRef	2	222,626,953 - 222,717,570 (+)	NCBI		HuRef
CHM1_1	2	230,793,470 - 230,884,098 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	230,405,191 - 230,495,787 (+)	NCBI		T2T-CHM13v2.0

Fbxo36
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	84,817,562 - 84,878,208 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	84,817,562 - 84,878,208 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	84,839,841 - 84,900,487 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	84,839,841 - 84,900,487 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	84,836,416 - 84,897,061 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	84,718,881 - 84,779,509 (+)	NCBI		MGSCv36	mm8
Celera	1	84,899,916 - 84,960,760 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	43.43	NCBI

Fbxo36
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	5,053,132 - 5,133,485 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	5,051,138 - 5,133,884 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO36
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	132,549,809 - 132,683,511 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	132,564,728 - 132,698,478 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	117,174,590 - 117,263,324 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	235,978,710 - 236,066,904 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	235,978,710 - 236,066,904 (+)	Ensembl	panpan1.1		panPan2

FBXO36
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	42,207,070 - 42,312,304 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	42,206,984 - 42,320,054 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	42,830,731 - 42,937,331 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	42,461,196 - 42,568,177 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	42,461,727 - 42,558,431 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	42,392,114 - 42,498,850 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	42,233,205 - 42,340,333 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	42,406,172 - 42,485,566 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxo36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	184,399,119 - 184,480,487 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	6,459,299 - 6,486,952 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	6,454,343 - 6,486,948 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO36
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	130,940,093 - 131,029,086 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	130,939,865 - 131,029,088 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	144,719,075 - 144,726,267 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO36
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	115,946,209 - 116,036,984 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	115,998,262 - 116,039,612 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	83,414,423 - 83,510,796 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo36
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	3,722,531 - 3,786,575 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624843	3,722,328 - 3,786,575 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fbxo36
489 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	48
Count of miRNA genes:	42
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000022901
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	79271511	91616855	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat

Markers in Region

D9Got106

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,080,304 - 86,080,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	92,473,856 - 92,474,027	NCBI	Rnor6.0
Rnor_5.0	9	92,206,431 - 92,206,602	UniSTS	Rnor5.0
RGSC_v3.4	9	84,123,979 - 84,124,151	RGD	RGSC3.4
RGSC_v3.4	9	84,123,980 - 84,124,151	UniSTS	RGSC3.4
RGSC_v3.1	9	84,307,398 - 84,307,570	RGD
Celera	9	83,504,116 - 83,504,287	UniSTS
RH 2.0 Map	9	853.2	RGD
Cytogenetic Map	9	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										4	9
Low	2	4	15	6	4	6	1	1	74	29	30	11	1
Below cutoff	1	37	42	35	15	35	7	10		2	2		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000022901 ⟹ ENSRNOP00000022901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	86,042,540 - 86,107,229 (+)	Ensembl
Rnor_6.0 Ensembl	9	92,435,896 - 92,500,765 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093695 ⟹ ENSRNOP00000076250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	86,040,862 - 86,107,220 (+)	Ensembl
Rnor_6.0 Ensembl	9	92,435,940 - 92,500,739 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100969 ⟹ ENSRNOP00000089548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	86,070,450 - 86,107,220 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101399 ⟹ ENSRNOP00000097800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	86,042,831 - 86,107,220 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107588 ⟹ ENSRNOP00000087733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	86,042,450 - 86,107,220 (+)	Ensembl

RefSeq Acc Id:

NM_001108804 ⟹ NP_001102274

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,490,618 - 93,555,298 (+)	NCBI
mRatBN7.2	9	86,042,522 - 86,107,220 (+)	NCBI
Rnor_6.0	9	92,435,872 - 92,500,756 (+)	NCBI
Rnor_5.0	9	92,168,447 - 92,231,811 (+)	NCBI
RGSC_v3.4	9	84,085,586 - 84,164,927 (+)	RGD
Celera	9	83,466,342 - 83,530,596 (+)	RGD

Sequence:

show sequence

TGTCTTAGCGACGGCGGTGGCGTCCCAAGATGGCGTCGTGGCTACCGGAGACTCTGTTTGAAAT
TGTAGGACAAGGCCCGGCGCCGAGCAAAGACTATTACCAGTTGTTGATCACCCGAACTCAGATC
ATCTTTAGATGGTGGAAGATTTCCCTGAGAAGTGAGTATCGGTCAGCAAAACCTGGAGAGACAA
AGGAAACTCACGAAGACTTCCTAGATAACTCTCATCTTCAAGTTCAAGTCGCCGTAGTATTTGG
TGCAAAGATATTAGACTATGTCTTCAACCTGTGTGAAGGTAAATTTGACTACCTGGAGCGGCTC
TCTGACAAACTGCTGCTGAAGATCATGAACTACCTGGACTTGGAAGACATCGCCAGGCTCTCTC
AGACATCAAGCCGGTTTGAGAAGCTGTGCAAGAGTGACTCGCTGTGGGAGCAGATAGTCCAGTC
CACCTATGACACCATCACCCCTGACATGCGGGCCCTGGCGAATGACGTGGGCTGGAGACAGATG
TTCTTCACCAACAAGATCCAGCTCCAGAGGCAGATCCGCAAGAAGAAGCAAAGACAGGGAAGCG
AGACTACGAAGCCTACTTAGGGGACGGCTGTTCCCACAACTGAGGCCACAGTGGTGCATCTCTT
CAGGTCCAATCTCACTCTCTCTTAACAACAGGTTTTGCTGATTCCAGGCATCACTTGAAAAATC
AGATTTTTCACACACATGCAAATCCACCTAGTGCCTTGCTTGAGCAATCTCCCCTGTCCTGCTC
AGGCCAACCCACGGCCCATGTACTAAGGGCTTCGAGACAGGAAGCCTCTCAGACCACCTCCTTC
CTGATCCCCTGTTGCCCATGAGGAAAGAGGCACCTGCTGTGTATGAACTAACAATAAAGAGTTA
TTGGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102274	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75538	(Get FASTA)	NCBI Sequence Viewer
	EDL75539	(Get FASTA)	NCBI Sequence Viewer
	EDL75540	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022901.5
	ENSRNOP00000076250
	ENSRNOP00000076250.2
	ENSRNOP00000087733.1
	ENSRNOP00000089548.1
	ENSRNOP00000097800.1

RefSeq Acc Id:	NP_001102274 ⟸ NM_001108804
- UniProtKB:	A6JWD0 (UniProtKB/TrEMBL), A0A8I6AH86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASWLPETLFEIVGQGPAPSKDYYQLLITRTQIIFRWWKISLRSEYRSAKPGETKETHEDFLDN SHLQVQVAVVFGAKILDYVFNLCEGKFDYLERLSDKLLLKIMNYLDLEDIARLSQTSSRFEKLC KSDSLWEQIVQSTYDTITPDMRALANDVGWRQMFFTNKIQLQRQIRKKKQRQGSETTKPT hide sequence

RefSeq Acc Id:

ENSRNOP00000076250 ⟸ ENSRNOT00000093695

RefSeq Acc Id:

ENSRNOP00000022901 ⟸ ENSRNOT00000022901

RefSeq Acc Id:

ENSRNOP00000097800 ⟸ ENSRNOT00000101399

RefSeq Acc Id:

ENSRNOP00000089548 ⟸ ENSRNOT00000100969

RefSeq Acc Id:

ENSRNOP00000087733 ⟸ ENSRNOT00000107588

Protein Domains

F-box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z9E4-F1-model_v2	AlphaFold	D3Z9E4	1-188	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696812

Promoter ID:

EPDNEW_R7336

Type:

multiple initiation site

Name:

Fbxo36_1

Description:

F-box protein 36

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	92,435,890 - 92,435,950	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307870	AgrOrtholog
BioCyc Gene	G2FUF-26952	BioCyc
Ensembl Genes	ENSRNOG00000017053	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022901.7	UniProtKB/TrEMBL
	ENSRNOT00000093695	ENTREZGENE
	ENSRNOT00000093695.2	UniProtKB/TrEMBL
	ENSRNOT00000100969.1	UniProtKB/TrEMBL
	ENSRNOT00000101399.1	UniProtKB/TrEMBL
	ENSRNOT00000107588.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.50	UniProtKB/TrEMBL
InterPro	F-box_dom_cyclin-like	UniProtKB/TrEMBL
	F-box_dom_like	UniProtKB/TrEMBL
KEGG Report	rno:363268	UniProtKB/TrEMBL
NCBI Gene	363268	ENTREZGENE
PANTHER	DACTYLIN	UniProtKB/TrEMBL
	F-BOX_WD REPEAT-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/TrEMBL
PhenoGen	Fbxo36	PhenoGen
PROSITE	FBOX	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017053	RatGTEx
SMART	FBOX	UniProtKB/TrEMBL
Superfamily-SCOP	F-box_dom_Skp2-like	UniProtKB/TrEMBL
UniProt	A0A1W2Q6H0_RAT	UniProtKB/TrEMBL
	A0A8I6AH86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARV1_RAT	UniProtKB/TrEMBL
	A0A8I6GHE7_RAT	UniProtKB/TrEMBL
	A6JWD0	ENTREZGENE, UniProtKB/TrEMBL
	D3Z9E4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Fbxo36	F-box protein 36	Fbxo36_predicted	F-box only protein 36 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Fbxo36_predicted	F-box only protein 36 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar