Pycr1 (pyrroline-5-carboxylate reductase 1) - Rat Genome Database

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Gene: Pycr1 (pyrroline-5-carboxylate reductase 1) Rattus norvegicus
Analyze
Symbol: Pycr1
Name: pyrroline-5-carboxylate reductase 1
RGD ID: 1307863
Description: Predicted to enable identical protein binding activity and pyrroline-5-carboxylate reductase activity. Predicted to be involved in several processes, including L-proline biosynthetic process; negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway; and regulation of mitochondrial membrane potential. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIB and autosomal recessive cutis laxa type IIIB. Orthologous to human PYCR1 (pyrroline-5-carboxylate reductase 1); PARTICIPATES IN arginine and proline metabolic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC287877; pyrroline-5-carboxylate reductase 1, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,416,056 - 106,420,982 (-)NCBIGRCr8
mRatBN7.210105,917,732 - 105,922,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,917,680 - 105,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,022,441 - 111,025,645 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,485,479 - 110,488,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,839,131 - 105,842,439 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,817,300 - 109,822,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,818,177 - 109,821,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,411,300 - 109,414,609 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,030,931 - 110,035,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,046,548 - 110,050,508 (-)NCBI
Celera10104,462,087 - 104,465,395 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
choline  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
clodronic acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (EXP,ISO)
dexamethasone  (ISO)
dioxygen  (ISO)
diuron  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
manganese(II) chloride  (EXP)
metformin  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
naphthalene  (ISO)
nevirapine  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2722838   PMID:12477932   PMID:14651853   PMID:16730026   PMID:18614015   PMID:19648921   PMID:23024808   PMID:23106098   PMID:23743200  


Genomics

Comparative Map Data
Pycr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,416,056 - 106,420,982 (-)NCBIGRCr8
mRatBN7.210105,917,732 - 105,922,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,917,680 - 105,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,022,441 - 111,025,645 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,485,479 - 110,488,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,839,131 - 105,842,439 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,817,300 - 109,822,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,818,177 - 109,821,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,411,300 - 109,414,609 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,030,931 - 110,035,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,046,548 - 110,050,508 (-)NCBI
Celera10104,462,087 - 104,465,395 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
PYCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,932,391 - 81,937,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,932,384 - 81,942,412 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,890,267 - 79,895,176 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,483,558 - 77,488,259 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,494,307 - 76,499,008 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,291,232 - 75,295,933 (-)NCBIHuRef
CHM1_11779,976,471 - 79,981,172 (-)NCBICHM1_1
T2T-CHM13v2.01782,799,550 - 82,804,459 (-)NCBIT2T-CHM13v2.0
Pycr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,527,591 - 120,534,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,526,538 - 120,534,595 (-)EnsemblGRCm39 Ensembl
GRCm3811120,638,998 - 120,643,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,635,712 - 120,643,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,497,026 - 120,504,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,455,514 - 120,459,794 (-)NCBIMGSCv36mm8
Celera11132,371,062 - 132,379,022 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.37NCBI
Pycr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,231,863 - 1,236,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,231,874 - 1,236,550 (+)NCBIChiLan1.0ChiLan1.0
PYCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,468,518 - 98,479,691 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,369,297 - 103,386,282 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,337,991 - 76,348,207 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,040,824 - 82,045,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,040,824 - 82,045,686 (-)Ensemblpanpan1.1panPan2
PYCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19360,353 - 364,795 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9360,376 - 364,570 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9962,468 - 966,895 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09953,687 - 958,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9953,684 - 958,106 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19978,841 - 983,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,105,463 - 1,109,889 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,184,099 - 1,188,527 (+)NCBIUU_Cfam_GSD_1.0
Pycr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602968,399 - 972,773 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,439,175 - 5,443,564 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,439,911 - 5,443,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,060,570 - 1,064,805 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,060,028 - 1,064,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PYCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,805,680 - 73,810,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,805,409 - 73,810,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,257,773 - 45,262,751 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pycr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,776,747 - 10,781,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,777,407 - 10,781,572 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pycr1
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000054949
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat

Markers in Region
RH137343  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,917,787 - 105,917,971 (+)MAPPERmRatBN7.2
Rnor_6.010109,817,356 - 109,817,539NCBIRnor6.0
Rnor_5.010109,410,408 - 109,410,591UniSTSRnor5.0
RGSC_v3.410110,030,960 - 110,031,143UniSTSRGSC3.4
Celera10104,461,184 - 104,461,367UniSTS
Cytogenetic Map10q32.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 12 12 12 53 12 19
Low 3 31 40 28 15 28 8 11 21 9 19 11 8
Below cutoff 5 1 4 1 13 3

Sequence


RefSeq Acc Id: ENSRNOT00000054949   ⟹   ENSRNOP00000051832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,917,778 - 105,922,549 (-)Ensembl
Rnor_6.0 Ensembl10109,818,177 - 109,821,807 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109183   ⟹   ENSRNOP00000092681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,917,680 - 105,922,453 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110897   ⟹   ENSRNOP00000093202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,917,680 - 105,922,467 (-)Ensembl
RefSeq Acc Id: NM_001105857   ⟹   NP_001099327
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,416,056 - 106,420,812 (-)NCBI
mRatBN7.210105,917,732 - 105,922,488 (-)NCBI
Rnor_6.010109,818,248 - 109,821,556 (-)NCBI
Rnor_5.010109,411,300 - 109,414,609 (-)NCBI
RGSC_v3.410110,030,931 - 110,035,883 (-)RGD
Celera10104,462,087 - 104,465,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768472   ⟹   XP_008766694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,416,056 - 106,420,982 (-)NCBI
mRatBN7.210105,917,732 - 105,922,658 (-)NCBI
Rnor_6.010109,817,300 - 109,822,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768473   ⟹   XP_008766695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,416,056 - 106,420,936 (-)NCBI
mRatBN7.210105,917,732 - 105,922,582 (-)NCBI
Rnor_6.010109,817,300 - 109,822,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768474   ⟹   XP_008766696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,416,056 - 106,420,883 (-)NCBI
mRatBN7.210105,917,732 - 105,922,559 (-)NCBI
Rnor_6.010109,817,300 - 109,822,102 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001099327   ⟸   NM_001105857
- UniProtKB: A0A8I6AII4 (UniProtKB/TrEMBL),   A6HLH3 (UniProtKB/TrEMBL),   A0A8I6GJW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766694   ⟸   XM_008768472
- Peptide Label: isoform X2
- UniProtKB: D3ZXI0 (UniProtKB/TrEMBL),   A0A8I6GJW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766696   ⟸   XM_008768474
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GJW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766695   ⟸   XM_008768473
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000051832   ⟸   ENSRNOT00000054949
RefSeq Acc Id: ENSRNOP00000092681   ⟸   ENSRNOT00000109183
RefSeq Acc Id: ENSRNOP00000093202   ⟸   ENSRNOT00000110897
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXI0-F1-model_v2 AlphaFold D3ZXI0 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307863 AgrOrtholog
BioCyc Gene G2FUF-22400 BioCyc
BioCyc Pathway ARG-PRO-PWY [L-arginine degradation VI (arginase 2 pathway)] BioCyc
BioCyc Pathway Image ARG-PRO-PWY BioCyc
Ensembl Genes ENSRNOG00000036682 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054949 ENTREZGENE
  ENSRNOT00000054949.5 UniProtKB/TrEMBL
  ENSRNOT00000109183.1 UniProtKB/TrEMBL
  ENSRNOT00000110897 ENTREZGENE
  ENSRNOT00000110897.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  ProC C-terminal domain-like UniProtKB/TrEMBL
InterPro 6-PGluconate_DH_C-like UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P5CR UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
  ProC_N UniProtKB/TrEMBL
KEGG Report rno:287877 UniProtKB/TrEMBL
NCBI Gene 287877 ENTREZGENE
PANTHER PTHR11645 UniProtKB/TrEMBL
  PYRROLINE-5-CARBOXYLATE REDUCTASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam F420_oxidored UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
PhenoGen Pycr1 PhenoGen
PIRSF Pyrrol-5-carb_rd UniProtKB/TrEMBL
PROSITE P5CR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036682 RatGTEx
Superfamily-SCOP 6DGDH_C_like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A8I6AII4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJW9 ENTREZGENE, UniProtKB/TrEMBL
  A6HLH3 ENTREZGENE, UniProtKB/TrEMBL
  B2RYR3_RAT UniProtKB/TrEMBL
  D3ZXI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pycr1  pyrroline-5-carboxylate reductase 1   Pycr1_predicted  pyrroline-5-carboxylate reductase 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pycr1_predicted  pyrroline-5-carboxylate reductase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED