Ptpdc1 (protein tyrosine phosphatase domain containing 1) - Rat Genome Database

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Gene: Ptpdc1 (protein tyrosine phosphatase domain containing 1) Rattus norvegicus
Analyze
Symbol: Ptpdc1
Name: protein tyrosine phosphatase domain containing 1
RGD ID: 1307698
Description: Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within smoothened signaling pathway. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: LOC291022; protein tyrosine phosphatase domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,235,311 - 16,284,160 (+)NCBIGRCr8
mRatBN7.21716,028,964 - 16,076,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,908,234 - 15,956,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,513,215 - 17,561,781 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,835,026 - 15,883,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,333,369 - 16,381,887 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01718,389,442 - 18,438,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41722,034,186 - 22,082,481 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11722,068,165 - 22,081,963 (+)NCBI
Celera1715,755,398 - 15,802,644 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21289087  


Genomics

Comparative Map Data
Ptpdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,235,311 - 16,284,160 (+)NCBIGRCr8
mRatBN7.21716,028,964 - 16,076,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,908,234 - 15,956,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,513,215 - 17,561,781 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,835,026 - 15,883,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,333,369 - 16,381,887 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01718,389,442 - 18,438,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41722,034,186 - 22,082,481 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11722,068,165 - 22,081,963 (+)NCBI
Celera1715,755,398 - 15,802,644 (+)NCBICelera
Cytogenetic Map17p14NCBI
PTPDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,030,813 - 94,109,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,030,794 - 94,109,856 (+)EnsemblGRCh38hg38GRCh38
GRCh37996,793,095 - 96,872,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36995,832,897 - 95,911,957 (+)NCBINCBI36Build 36hg18NCBI36
Build 34993,872,630 - 93,951,691NCBI
Celera967,234,631 - 67,313,691 (+)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef966,469,862 - 66,548,925 (+)NCBIHuRef
CHM1_1996,939,857 - 97,018,968 (+)NCBICHM1_1
T2T-CHM13v2.09106,198,554 - 106,277,594 (+)NCBIT2T-CHM13v2.0
Ptpdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,731,345 - 48,779,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,731,348 - 48,779,140 (-)EnsemblGRCm39 Ensembl
GRCm381348,577,869 - 48,625,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,577,872 - 48,625,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv371348,673,241 - 48,720,942 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361348,589,809 - 48,637,510 (-)NCBIMGSCv36mm8
Celera1349,668,289 - 49,715,985 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.86NCBI
Ptpdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555153,912,117 - 4,044,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555153,912,495 - 4,044,999 (+)NCBIChiLan1.0ChiLan1.0
PTPDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21145,320,971 - 45,400,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1945,323,351 - 45,402,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0965,151,252 - 65,230,335 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1993,212,501 - 93,290,945 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl993,212,501 - 93,290,945 (+)Ensemblpanpan1.1panPan2
PTPDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1197,942,905 - 98,002,025 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl197,944,325 - 98,002,074 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,339,476 - 98,398,283 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,560,495 - 98,619,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,561,623 - 98,619,511 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,175,878 - 98,234,664 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0197,911,546 - 97,970,822 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,666,042 - 98,725,278 (-)NCBIUU_Cfam_GSD_1.0
Ptpdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049449,006,809 - 9,045,890 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937000156,596 - 195,717 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937000156,634 - 195,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,321,476 - 43,418,784 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,321,391 - 43,418,788 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,640,924 - 44,736,247 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112104,365,169 - 104,499,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12104,365,419 - 104,446,306 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603892,677,822 - 92,802,996 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptpdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248682,414,265 - 2,487,620 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248682,414,320 - 2,517,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptpdc1
505 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:129
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000060550
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat

Markers in Region
D17Got20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21716,071,491 - 16,071,747 (+)MAPPERmRatBN7.2
Rnor_6.01716,375,568 - 16,375,822NCBIRnor6.0
Rnor_5.01718,431,681 - 18,431,935UniSTSRnor5.0
RGSC_v3.41722,077,475 - 22,077,730RGDRGSC3.4
RGSC_v3.41722,077,476 - 22,077,730UniSTSRGSC3.4
RGSC_v3.11722,077,476 - 22,077,730RGD
Celera1715,797,639 - 15,797,893UniSTS
RH 3.4 Map17192.0UniSTS
RH 3.4 Map17192.0RGD
RH 2.0 Map17147.6RGD
Cytogenetic Map17p14UniSTS
BE108539  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21716,030,364 - 16,030,538 (+)MAPPERmRatBN7.2
Rnor_6.01716,334,816 - 16,334,989NCBIRnor6.0
Rnor_5.01718,390,854 - 18,391,027UniSTSRnor5.0
RGSC_v3.41722,035,587 - 22,035,760UniSTSRGSC3.4
Celera1715,756,799 - 15,756,972UniSTS
RH 3.4 Map17187.4UniSTS
Cytogenetic Map17p14UniSTS
AU046352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21716,071,522 - 16,071,758 (+)MAPPERmRatBN7.2
Rnor_6.01716,375,601 - 16,375,832NCBIRnor6.0
Rnor_5.01718,431,714 - 18,431,945UniSTSRnor5.0
RGSC_v3.41722,077,509 - 22,077,740UniSTSRGSC3.4
Celera1715,797,672 - 15,797,903UniSTS
Cytogenetic Map17p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 59 10 17
Low 3 43 55 41 19 41 8 11 15 25 24 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000060550   ⟹   ENSRNOP00000057289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1716,333,415 - 16,380,573 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089140   ⟹   ENSRNOP00000075617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1716,340,226 - 16,380,248 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1716,049,382 - 16,076,512 (+)Ensembl
RefSeq Acc Id: NM_001106104   ⟹   NP_001099574
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,311 - 16,282,853 (+)NCBI
mRatBN7.21716,028,964 - 16,076,512 (+)NCBI
Rnor_6.01716,333,415 - 16,380,573 (+)NCBI
Rnor_5.01718,389,442 - 18,438,000 (+)NCBI
RGSC_v3.41722,034,186 - 22,082,481 (+)RGD
Celera1715,755,398 - 15,802,644 (+)RGD
Sequence:
RefSeq Acc Id: XM_063276152   ⟹   XP_063132222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276153   ⟹   XP_063132223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,429 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276154   ⟹   XP_063132224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
RefSeq Acc Id: XM_063276155   ⟹   XP_063132225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
RefSeq Acc Id: XM_063276156   ⟹   XP_063132226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,256,152 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276157   ⟹   XP_063132227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,517 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276158   ⟹   XP_063132228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,437 - 16,284,160 (+)NCBI
RefSeq Acc Id: XM_063276159   ⟹   XP_063132229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,442 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058819
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,235,429 - 16,284,160 (+)NCBI
RefSeq Acc Id: XR_010058823
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,268,459 - 16,282,355 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099574   ⟸   NM_001106104
- UniProtKB: A6J6Y7 (UniProtKB/TrEMBL),   A6J6Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075617   ⟸   ENSRNOT00000089140
RefSeq Acc Id: ENSRNOP00000057289   ⟸   ENSRNOT00000060550
RefSeq Acc Id: XP_063132223   ⟸   XM_063276153
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132228   ⟸   XM_063276158
- Peptide Label: isoform X6
- UniProtKB: A6J6Y7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132229   ⟸   XM_063276159
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063132227   ⟸   XM_063276157
- Peptide Label: isoform X6
- UniProtKB: A6J6Y7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132226   ⟸   XM_063276156
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132222   ⟸   XM_063276152
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063132224   ⟸   XM_063276154
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132225   ⟸   XM_063276155
- Peptide Label: isoform X4
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KB18-F1-model_v2 AlphaFold A0A0G2KB18 1-796 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700360
Promoter ID:EPDNEW_R10884
Type:initiation region
Name:Ptpdc1_1
Description:protein tyrosine phosphatase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01716,333,372 - 16,333,432EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307698 AgrOrtholog
BioCyc Gene G2FUF-9976 BioCyc
Ensembl Genes ENSRNOG00000026564 Ensembl
  ENSRNOG00000064794 Ensembl
Gene3D-CATH Protein tyrosine phosphatase superfamily UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPDC1_PTP UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
KEGG Report rno:291022 UniProtKB/TrEMBL
NCBI Gene 291022 ENTREZGENE
PANTHER PROTEIN TYROSINE PHOSPHATASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PhenoGen Ptpdc1 PhenoGen
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026564 RatGTEx
  ENSRNOG00000064794 RatGTEx
SMART DSPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP (Phosphotyrosine protein) phosphatases II UniProtKB/TrEMBL
UniProt A6J6Y7 ENTREZGENE, UniProtKB/TrEMBL
  A6J6Y8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ptpdc1  protein tyrosine phosphatase domain containing 1   Ptpdc1_predicted  protein tyrosine phosphatase domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ptpdc1_predicted  protein tyrosine phosphatase domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED