Pcbp3 (poly(rC) binding protein 3)

Gene: Pcbp3 (poly(rC) binding protein 3) Rattus norvegicus

Analyze

Symbol:

Pcbp3

Name:

poly(rC) binding protein 3

RGD ID:

1307430

Description:

Predicted to enable C-rich single-stranded DNA binding activity and mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in cytoplasm and nucleus. Orthologous to human PCBP3 (poly(rC) binding protein 3); PARTICIPATES IN iron homeostasis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC294336; poly(rC)-binding protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCBP3 (poly(rC) binding protein 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Pcbp3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pcbp3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCBP3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCBP3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcbp3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCBP3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCBP3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcbp3 (poly(rC) binding protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCBP3 (poly(rC) binding protein 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pcbp3 (poly(rC) binding protein 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcbp3 (poly(rC) binding protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HEK2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	mub	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pes-4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PBP2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pcbp1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,635,579 - 11,877,721 (+)	NCBI		GRCr8
mRatBN7.2	20	11,678,218 - 11,878,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,678,269 - 11,878,210 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	12,374,540 - 12,574,476 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,735,523 - 11,935,453 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	12,207,277 - 12,407,227 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	12,429,255 - 12,629,985 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	12,429,315 - 12,629,981 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	14,590,187 - 14,789,566 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	12,089,173 - 12,290,273 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	12,089,399 - 12,290,500 (+)	NCBI
Celera	20	13,177,980 - 13,376,670 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Axenfeld-Rieger syndrome type 3 (ISO)

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

genetic disease (ISO)

homocystinuria (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (EXP)

dexamethasone (EXP)

diuron (EXP)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

methoxychlor (EXP)

N-(1-naphthyl)ethylenediamine (ISO)

ozone (ISO)

paracetamol (EXP)

progesterone (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (ISO)

regulation of gene expression (IBA)

regulation of RNA metabolic process (IBA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cytoplasm (IBA)

nucleus (IBA)

Molecular Function

C-rich single-stranded DNA binding (ISO)

mRNA binding (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

iron homeostasis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Regulators of Iron Homeostasis: New Players in Metabolism, Cell Death, and Disease.	Bogdan AR, etal., Trends Biochem Sci. 2016 Mar;41(3):274-86. doi: 10.1016/j.tibs.2015.11.012. Epub 2015 Dec 23.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease.	Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16780588	PMID:22521865	PMID:22658674	PMID:23533145

Genomics

Comparative Map Data

Pcbp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,635,579 - 11,877,721 (+)	NCBI		GRCr8
mRatBN7.2	20	11,678,218 - 11,878,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,678,269 - 11,878,210 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	12,374,540 - 12,574,476 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,735,523 - 11,935,453 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	12,207,277 - 12,407,227 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	12,429,255 - 12,629,985 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	12,429,315 - 12,629,981 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	14,590,187 - 14,789,566 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	12,089,173 - 12,290,273 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	12,089,399 - 12,290,500 (+)	NCBI
Celera	20	13,177,980 - 13,376,670 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

PCBP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	45,643,725 - 45,942,450 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	45,643,694 - 45,942,454 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	47,063,639 - 47,362,364 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	46,094,303 - 46,186,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	46,094,302 - 46,186,795	NCBI
Celera	21	32,382,957 - 32,473,995 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	32,648,695 - 32,742,937 (+)	NCBI		HuRef
CHM1_1	21	46,830,711 - 46,923,863 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	44,013,409 - 44,318,564 (+)	NCBI		T2T-CHM13v2.0

Pcbp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	76,597,688 - 76,797,951 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	76,597,691 - 76,797,721 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	76,761,854 - 76,962,117 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	76,761,857 - 76,961,887 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	76,224,599 - 76,424,692 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	76,205,573 - 76,405,504 (-)	NCBI		MGSCv36	mm8
Celera	10	77,806,064 - 78,005,944 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Pcbp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	42,377,972 - 42,446,722 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	42,395,149 - 42,447,312 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCBP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	41,728,255 - 42,038,925 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	36,597,268 - 36,908,069 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	31,972,644 - 32,282,794 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	45,248,322 - 45,545,909 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	45,450,722 - 45,545,909 (+)	Ensembl	panpan1.1		panPan2

PCBP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	39,025,744 - 39,275,239 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	39,025,731 - 39,275,239 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	38,255,709 - 38,502,304 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	38,663,161 - 38,912,503 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	38,663,053 - 38,912,503 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	38,526,738 - 38,775,388 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	38,488,787 - 38,736,415 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	39,006,828 - 39,255,345 (+)	NCBI		UU_Cfam_GSD_1.0

Pcbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	38,409,485 - 38,577,921 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936778	552,961 - 625,524 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936778	552,290 - 720,724 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCBP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	208,094,877 - 208,259,369 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	208,060,949 - 208,259,368 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	218,271,388 - 218,334,499 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCBP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	89,304,497 - 89,585,037 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	17,572,695 - 17,878,333 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcbp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	31,037,384 - 31,104,250 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	30,866,883 - 31,104,845 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pcbp3
1429 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	123
Count of miRNA genes:	92
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000001675
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9039719	13461775	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat

Markers in Region

D20Rat4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	11,730,830 - 11,731,000 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	12,482,277 - 12,482,444	NCBI	Rnor6.0
Rnor_5.0	20	14,642,667 - 14,642,834	UniSTS	Rnor5.0
RGSC_v3.4	20	12,141,421 - 12,141,753	RGD	RGSC3.4
RGSC_v3.4	20	12,141,573 - 12,141,740	UniSTS	RGSC3.4
RGSC_v3.1	20	12,141,800 - 12,141,967	RGD
Celera	20	13,230,433 - 13,230,600	UniSTS
RH 3.4 Map	20	157.4	UniSTS
RH 3.4 Map	20	157.4	RGD
RH 2.0 Map	20	161.9	RGD
SHRSP x BN Map	20	12.6499	RGD
Cytogenetic Map	20	p12	UniSTS

RH129104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	11,878,003 - 11,878,187 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	12,629,776 - 12,629,959	NCBI	Rnor6.0
Rnor_5.0	20	14,789,360 - 14,789,543	UniSTS	Rnor5.0
RGSC_v3.4	20	12,290,068 - 12,290,251	UniSTS	RGSC3.4
Celera	20	13,376,465 - 13,376,648	UniSTS
RH 3.4 Map	20	157.8	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		35	11	4	7	4			74	19	36	3
Low	3	8	42	33	12	33	8	11		16	5	8	8
Below cutoff			4	4		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001675 ⟹ ENSRNOP00000001675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	11,678,276 - 11,878,209 (+)	Ensembl
Rnor_6.0 Ensembl	20	12,429,315 - 12,629,981 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098898 ⟹ ENSRNOP00000082318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	11,678,269 - 11,878,210 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103785 ⟹ ENSRNOP00000076709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	11,678,281 - 11,878,208 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104059 ⟹ ENSRNOP00000077332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	11,678,301 - 11,878,209 (+)	Ensembl

RefSeq Acc Id:

NM_001011945 ⟹ NP_001011945

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,782 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,276 - 11,878,209 (+)	NCBI
Rnor_6.0	20	12,429,310 - 12,629,981 (+)	NCBI
Rnor_5.0	20	14,590,187 - 14,789,566 (+)	NCBI
RGSC_v3.4	20	12,089,173 - 12,290,273 (+)	RGD
Celera	20	13,177,980 - 13,376,670 (+)	NCBI

Sequence:

show sequence

GCGCTGCTTACCGTCGCCTGAGCTAGGAGACGCCGTGGCCGCCGCTGGGTCGCCTCGGGCTTCG
CGTCGCGCCGTGTCTGCCTCCTCTGCCCCACCCGATCGGCAGCACAGGCTCTACCTAGTCCGCG
GCCTCCCTGTCCGCGGCGGGGCAGGTGGTTTTGCTGAGGTGAACTCCTGCCCTGCCTTCTGGTA
GCTGCTGCCTCCTGACCCTGAGCTCTCGGCGAACCTGGGAAGGGGATGAGAATAGGGTAGGTGA
GCTCCAGCCAAGCCAGCCCTGCCAGAGACCTCCAGTTTTGGTGGATGGTGCTCTGAGCCACAGT
GCACTTGAGCGTTTGGATCTATGGACCTGCTTTGAACCATAGAGCCTGCCTATGGGGGAAGGTG
ACGCCATCTGGGCCCCATCCATCCTTCCTCACAGTACCCTCAGCACCTTAAGCCACCACCCTGA
GCTACATTTTGGAGGGAAGATGGAATCTAAGGTCTCGGAAGGTGGCCTGAACGTAACCCTGACC
ATCCGCCTCCTGATGCATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACAGTAA
AGAAGATGCGTGAAGAGAGTGGCGCCAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGAAT
CGTCACCATCACAGGCCCAACGGACGCCATCTTCAAGGCCTTTGCTATGATTGCATACAAGTTT
GAGGAGGACATCATTAATTCCATGAGCAACAGCCCTGCCACCAGCAAGCCCCCCGTGACACTGC
GACTAGTGGTCCCTGCCAGCCAGTGTGGGTCCCTGATCGGCAAAGGTGGCTCCAAGATCAAGGA
GATCCGGGAGTCCACAGGTGCTCAGGTCCAGGTGGCAGGTGACATGCTGCCCAACTCCACGGAG
CGGGCGGTGACTATCTCAGGGACCCCGGACGCCATCATCCAGTGTGTGAAACAGATCTGTGTGG
TCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCC
TGTCATTTTTGCAGGTGGTCAGGCCTACACAATCCAGGGACAGTACGCCATCCCCCACCCAGAT
CAGTTGACCAAGCTCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCA
ACCCCGCTTTCCCCGGTCTGGATGCCAGCCCACCGGCCAGCACTCATGAACTCACCATTCCCAA
TGATCTTATAGGCTGCATAATTGGACGCCAAGGCACCAAAATCAATGAAATCCGACAGATGTCT
GGAGCTCAGATCAAAATCGCCAACGCCACTGAAGGGTCATCAGAGCGCCAGATTACCATCACAG
GGACCCCAGCCAACATCAGCCTCGCCCAGTATCTCATCAACGCTAGGCTGACGTCTGAGGTCAC
TGGGATGGGTGCGCTCTAACCTCCCCGAGATCCTCCACTGCACACATCGGATGGCTCCAGCCCG
CAGCCTCACCAGCTGACACACTGTACAGACTGCCTGTCCTTCCTTGCAGATATGACTAGAGCGT
TTTCTTTACAGACAGGTGATAGTGCGTGTCTGCCCACTCAGGCCCTGTGCGCTCCGTGTTAGTG
TAGCCTCCACGCATTGGCATGCAGCTCTTTACTTTAATGCTCAACGTATTCCCAAATGTGATGT
TTCAGAGATGTATTCCTCAGTATCCATGTGACTACCTGTTTAAAAGTTGGTTTGATGCTTTAAC
AGCACTTCCCATGTCCTGCTGCCCCTTGTTCTCAGAGACCCTCCTCTCCCACCCGGTCTACTGA
CTCATTGCCACCCTAGATTGTCCACAGGGATCAGAGGTACTTTTCTTGTAACCTGCAGGGAGTG
TCTGGAAGAGGAGGGACTTGGGGAGTATCTAAGGAGCAGGGTGGAGTGCCAGAGGGTGGGGTGG
GACCCTGGCTTCACTGGGATATCTCGGGGAGGGGGCGCTTGGGGCCCCCAGGTGTCTTCCAAAA
TGGCTAAGAACAAGGACTTGCCAGAAAGTTCATCTGCACCCATCAGAGTTTAATAAATGTCGTG
TTCCTCTCCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256283 ⟹ XP_006256345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,220 - 11,878,210 (+)	NCBI
Rnor_6.0	20	12,429,261 - 12,629,985 (+)	NCBI
Rnor_5.0	20	14,590,187 - 14,789,566 (+)	NCBI

Sequence:

show sequence

CGGAGGGGGCGGGTCCTCGCCGCGCGCAGTGCTCGGGCCAGAGCTCGAGGCGCTGCTTACCGTC
GCCTGAGCTAGGAGACGCCGTGGCCGCCGCTGGGTCGCCTCGGGCTTCGCGTCGCGCCGTGTCT
GCCTCCTCTGCCCCACCCGATCGGCAGCACAGGCTCTACCTAGTCCGCGGCCTCCCTGTCCGCG
GCGGGGCAGGTGGTTTTGCTGAGGTGAACTCCTGCCCTGCCTTCTGGTAGCTGCTGCCTCCTGA
CCCTGAGCTCTCGGCGAACCTGGGAAGGGGATGAGAATAGGGTAGGTGAGCTCCAGCCAAGCCA
GCCCTGCCAGAGACCTCCAGTTTTGGTGGATGGTGCTCTGAGCCACAGTGCACTTGAGCGTTTG
GATCTATGGACCTGCTTTGAACCATAGAGCCTGCCTATGGGGGAAGGTGACGCCATCTGGGCCC
CATCCATCCTTCCTCACAGTACCCTCAGCACCTTAAGCCACCACCCTGAGCTACATTTTGGAGG
GAAGATGGAATCTAAGGTCTCGGAAGGTGGCCTGAACGTAACCCTGACCATCCGCCTCCTGATG
CATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACAGTAAAGAAGATGCGTGAAG
AGAGTGGCGCCAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGAATCGTCACCATCACAGG
CCCAACGGACGCCATCTTCAAGGCCTTTGCTATGATTGCATACAAGTTTGAGGAGGACATCATT
AATTCCATGAGCAACAGCCCTGCCACCAGCAAGCCCCCCGTGACACTGCGACTAGTGGTCCCTG
CCAGCCAGTGTGGGTCCCTGATCGGCAAAGGTGGCTCCAAGATCAAGGAGATCCGGGAGTCCAC
AGGTGCTCAGGTCCAGGTGGCAGGTGACATGCTGCCCAACTCCACGGAGCGGGCGGTGACTATC
TCAGGGACCCCGGACGCCATCATCCAGTGTGTGAAACAGATCTGTGTGGTCATGCTGGAGTCCC
CACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCTGTCATTTTTGCAGG
TGGTCAGGTAAGAGCCGACCCGCTCGCGGCCTCCACTGCCAACCTCAGCCTCTTACTGCAGCAC
CCGCCGCTGCCCGCCTACACAATCCAGGGACAGTACGCCATCCCCCACCCAGATCAGTTGACCA
AGCTCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCAACCCCGCTTT
CCCCGGAGAAAAGCTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGTCGTCA
GGTCTGGATGCCAGCCCACCGGCCAGCACTCATGAACTCACCATTCCCAATGATCTTATAGGCT
GCATAATTGGACGCCAAGGCACCAAAATCAATGAAATCCGACAGATGTCTGGAGCTCAGATCAA
AATCGCCAACGCCACTGAAGGGTCATCAGAGCGCCAGATTACCATCACAGGGACCCCAGCCAAC
ATCAGCCTCGCCCAGTATCTCATCAACGCTAGGCTGACGTCTGAGGTCACTGGGATGGGTGCGC
TCTAACCTCCCCGAGATCCTCCACTGCACACATCGGATGGCTCCAGCCCGCAGCCTCACCAGCT
GACACACTGTACAGACTGCCTGTCCTTCCTTGCAGATATGACTAGAGCGTTTTCTTTACAGACA
GGTGATAGTGCGTGTCTGCCCACTCAGGCCCTGTGCGCTCCGTGTTAGTGTAGCCTCCACGCAT
TGGCATGCAGCTCTTTACTTTAATGCTCAACGTATTCCCAAATGTGATGTTTCAGAGATGTATT
CCTCAGTATCCATGTGACTACCTGTTTAAAAGTTGGTTTGATGCTTTAACAGCACTTCCCATGT
CCTGCTGCCCCTTGTTCTCAGAGACCCTCCTCTCCCACCCGGTCTACTGACTCATTGCCACCCT
AGATTGTCCACAGGGATCAGAGGTACTTTTCTTGTAACCTGCAGGGAGTGTCTGGAAGAGGAGG
GACTTGGGGAGTATCTAAGGAGCAGGGTGGAGTGCCAGAGGGTGGGGTGGGACCCTGGCTTCAC
TGGGATATCTCGGGGAGGGGGCGCTTGGGGCCCCCAGGTGTCTTCCAAAATGGCTAAGAACAAG
GACTTGCCAGAAAGTTCATCTGCACCCATCAGAGTTTAATAAATGTCGTGTTCCTCTCCCCCC

hide sequence

RefSeq Acc Id:

XM_039098572 ⟹ XP_038954500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,674 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,220 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098575 ⟹ XP_038954503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,220 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098576 ⟹ XP_038954504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,220 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098577 ⟹ XP_038954505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,569 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,223 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098578 ⟹ XP_038954506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,676,960 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,223 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098580 ⟹ XP_038954508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,877,721 (+)	NCBI
mRatBN7.2	20	11,678,223 - 11,878,210 (+)	NCBI

RefSeq Acc Id:

XM_039098583 ⟹ XP_038954511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI
mRatBN7.2	20	11,678,222 - 11,876,712 (+)	NCBI

RefSeq Acc Id:

XM_039098584 ⟹ XP_038954512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,855,472 (+)	NCBI
mRatBN7.2	20	11,678,220 - 11,855,960 (+)	NCBI

RefSeq Acc Id:

XM_039098585 ⟹ XP_038954513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI
mRatBN7.2	20	11,678,226 - 11,876,712 (+)	NCBI

RefSeq Acc Id:

XM_063279056 ⟹ XP_063135126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,712 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279057 ⟹ XP_063135127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,712 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279058 ⟹ XP_063135128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,635,579 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279059 ⟹ XP_063135129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,712 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279060 ⟹ XP_063135130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,712 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279061 ⟹ XP_063135131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,712 - 11,877,721 (+)	NCBI

RefSeq Acc Id:

XM_063279062 ⟹ XP_063135132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI

RefSeq Acc Id:

XM_063279063 ⟹ XP_063135133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI

RefSeq Acc Id:

XM_063279064 ⟹ XP_063135134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,359 (+)	NCBI

RefSeq Acc Id:

XM_063279065 ⟹ XP_063135135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,359 (+)	NCBI

RefSeq Acc Id:

XR_005497206

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI
mRatBN7.2	20	11,678,222 - 11,876,776 (+)	NCBI

RefSeq Acc Id:

XR_010060648

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI

RefSeq Acc Id:

XR_010060649

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,677,681 - 11,876,229 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011945	(Get FASTA)	NCBI Sequence Viewer
	XP_006256345	(Get FASTA)	NCBI Sequence Viewer
	XP_038954500	(Get FASTA)	NCBI Sequence Viewer
	XP_038954503	(Get FASTA)	NCBI Sequence Viewer
	XP_038954504	(Get FASTA)	NCBI Sequence Viewer
	XP_038954505	(Get FASTA)	NCBI Sequence Viewer
	XP_038954506	(Get FASTA)	NCBI Sequence Viewer
	XP_038954508	(Get FASTA)	NCBI Sequence Viewer
	XP_038954511	(Get FASTA)	NCBI Sequence Viewer
	XP_038954512	(Get FASTA)	NCBI Sequence Viewer
	XP_038954513	(Get FASTA)	NCBI Sequence Viewer
	XP_063135126	(Get FASTA)	NCBI Sequence Viewer
	XP_063135127	(Get FASTA)	NCBI Sequence Viewer
	XP_063135128	(Get FASTA)	NCBI Sequence Viewer
	XP_063135129	(Get FASTA)	NCBI Sequence Viewer
	XP_063135130	(Get FASTA)	NCBI Sequence Viewer
	XP_063135131	(Get FASTA)	NCBI Sequence Viewer
	XP_063135132	(Get FASTA)	NCBI Sequence Viewer
	XP_063135133	(Get FASTA)	NCBI Sequence Viewer
	XP_063135134	(Get FASTA)	NCBI Sequence Viewer
	XP_063135135	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79196	(Get FASTA)	NCBI Sequence Viewer
	EDL97125	(Get FASTA)	NCBI Sequence Viewer
	EDL97126	(Get FASTA)	NCBI Sequence Viewer
	EDL97127	(Get FASTA)	NCBI Sequence Viewer
	EDL97128	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001675
	ENSRNOP00000001675.5
	ENSRNOP00000076709
	ENSRNOP00000076709.1
	ENSRNOP00000077332.1
	ENSRNOP00000082318.1

RefSeq Acc Id:

NP_001011945 ⟸ NM_001011945

- UniProtKB:

F7F4P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKK
GETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKP
PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVK
QICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPP
LGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ
ITITGTPANISLAQYLINARLTSEVTGMGAL

hide sequence

RefSeq Acc Id:	XP_006256345 ⟸ XM_006256283
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y0N5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKK GETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKP PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVK QICVVMLESPPKGATIPYRPKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQY AIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL TSEVTGMGAL hide sequence

RefSeq Acc Id:

ENSRNOP00000001675 ⟸ ENSRNOT00000001675

RefSeq Acc Id:	XP_038954503 ⟸ XM_039098575
- Peptide Label:	isoform X3
- UniProtKB:	F7F4P9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954500 ⟸ XM_039098572
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y0N5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954504 ⟸ XM_039098576
- Peptide Label:	isoform X4
- UniProtKB:	F7F4P9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954512 ⟸ XM_039098584
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038954511 ⟸ XM_039098583
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038954505 ⟸ XM_039098577
- Peptide Label:	isoform X5
- UniProtKB:	A6JKB2 (UniProtKB/TrEMBL), A0A8I5Y0N5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954506 ⟸ XM_039098578
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5Y0N5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954508 ⟸ XM_039098580
- Peptide Label:	isoform X9
- UniProtKB:	F7F4P9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954513 ⟸ XM_039098585
- Peptide Label:	isoform X16

RefSeq Acc Id:

ENSRNOP00000082318 ⟸ ENSRNOT00000098898

RefSeq Acc Id:

ENSRNOP00000076709 ⟸ ENSRNOT00000103785

RefSeq Acc Id:

ENSRNOP00000077332 ⟸ ENSRNOT00000104059

RefSeq Acc Id:	XP_063135128 ⟸ XM_063279058
- Peptide Label:	isoform X5
- UniProtKB:	A6JKB2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135134 ⟸ XM_063279064
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063135135 ⟸ XM_063279065
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063135132 ⟸ XM_063279062
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063135133 ⟸ XM_063279063
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063135126 ⟸ XM_063279056
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063135127 ⟸ XM_063279057
- Peptide Label:	isoform X5
- UniProtKB:	A6JKB2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135131 ⟸ XM_063279061
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063135129 ⟸ XM_063279059
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063135130 ⟸ XM_063279060
- Peptide Label:	isoform X7

Protein Domains

K Homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY48-F1-model_v2	AlphaFold	Q6AY48	1-319	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701512

Promoter ID:

EPDNEW_R12036

Type:

initiation region

Name:

Pcbp3_1

Description:

poly binding protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	12,429,314 - 12,429,374	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307430	AgrOrtholog
BioCyc Gene	G2FUF-4198	BioCyc
Ensembl Genes	ENSRNOG00000001245	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001675	ENTREZGENE
	ENSRNOT00000001675.5	UniProtKB/TrEMBL
	ENSRNOT00000098898.1	UniProtKB/TrEMBL
	ENSRNOT00000103785.1	UniProtKB/TrEMBL
	ENSRNOT00000104059.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7131426	IMAGE-MGC_LOAD
InterPro	IPR004087	UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/TrEMBL
	KH_type_1	UniProtKB/TrEMBL
KEGG Report	rno:294336	UniProtKB/TrEMBL
MGC_CLONE	MGC:94248	IMAGE-MGC_LOAD
NCBI Gene	294336	ENTREZGENE
PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	UniProtKB/TrEMBL
	POLY(RC) BINDING PROTEIN 3	UniProtKB/TrEMBL
	POLY(RC)-BINDING PROTEIN 3	UniProtKB/TrEMBL
Pfam	KH_1	UniProtKB/TrEMBL
PhenoGen	Pcbp3	PhenoGen
PROSITE	KH_TYPE_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001245	RatGTEx
SMART	SM00322	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54791	UniProtKB/TrEMBL
UniProt	A0A8I5Y0N5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y113_RAT	UniProtKB/TrEMBL
	A0A8I5ZWT0_RAT	UniProtKB/TrEMBL
	A6JKB2	ENTREZGENE, UniProtKB/TrEMBL
	F7F4P9	ENTREZGENE, UniProtKB/TrEMBL
	Q6AY48_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Pcbp3	poly(rC) binding protein 3	Pcbp3_predicted	poly(rC) binding protein 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pcbp3_predicted	poly(rC) binding protein 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations