Psmb10 (proteasome 20S subunit beta 10) - Rat Genome Database

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Gene: Psmb10 (proteasome 20S subunit beta 10) Rattus norvegicus
Analyze
Symbol: Psmb10 (Ensembl: Ctrl)
Name: proteasome 20S subunit beta 10 (Ensembl:chymotrypsin-like)
RGD ID: 1307428
Description: Predicted to enable endopeptidase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within T cell proliferation and cell morphogenesis. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex and spermatoproteasome complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in proteosome-associated autoinflammatory syndrome 5. Orthologous to human PSMB10 (proteasome 20S subunit beta 10); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291983; low molecular mass protein 10; macropain subunit MECl-1; MGC112890; multicatalytic endopeptidase complex subunit MECl-1; proteasome (prosome, macropain) subunit, beta type 10; proteasome MECl-1; proteasome subunit beta 10; proteasome subunit beta type-10; proteasome subunit beta-2i
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,740,808 - 50,743,292 (-)NCBIGRCr8
mRatBN7.21933,830,958 - 33,833,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,827,229 - 33,833,626 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,646,494 - 40,648,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,299,809 - 41,302,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,598,358 - 43,600,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,909,543 - 37,912,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,909,546 - 37,912,027 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,776,574 - 48,779,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,777,710 - 35,780,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,763,530 - 35,785,075 (-)NCBI
Celera1933,258,507 - 33,260,991 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxynon-2-enal  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
Actein  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenthion  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fructose  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glyphosate  (ISO)
ionomycin  (ISO)
isobutanol  (ISO)
lactacystin  (ISO)
lipopolysaccharide  (ISO)
metacetamol  (ISO)
methimazole  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
salicylic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium dodecyl sulfate  (ISO)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
tacrolimus hydrate  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
theophylline  (EXP)
thioacetamide  (EXP)
tolfenamic acid  (ISO)
toluene  (EXP)
trametinib  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
Triptolide  (EXP)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15199151   PMID:16857966   PMID:17540904   PMID:18419753   PMID:23706739  


Genomics

Comparative Map Data
Psmb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,740,808 - 50,743,292 (-)NCBIGRCr8
mRatBN7.21933,830,958 - 33,833,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,827,229 - 33,833,626 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,646,494 - 40,648,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,299,809 - 41,302,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,598,358 - 43,600,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,909,543 - 37,912,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,909,546 - 37,912,027 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,776,574 - 48,779,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,777,710 - 35,780,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,763,530 - 35,785,075 (-)NCBI
Celera1933,258,507 - 33,260,991 (-)NCBICelera
Cytogenetic Map19q12NCBI
PSMB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,934,506 - 67,936,850 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,934,506 - 67,936,864 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,968,409 - 67,970,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,525,908 - 66,528,254 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,525,907 - 66,528,254NCBI
Celera1652,476,864 - 52,479,210 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,841,977 - 53,844,350 (-)NCBIHuRef
CHM1_11669,376,471 - 69,378,844 (-)NCBICHM1_1
T2T-CHM13v2.01673,730,280 - 73,732,624 (-)NCBIT2T-CHM13v2.0
Psmb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,662,360 - 106,665,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,662,367 - 106,665,076 (-)EnsemblGRCm39 Ensembl
GRCm388105,935,728 - 105,938,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,935,735 - 105,938,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,459,628 - 108,462,292 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,824,893 - 108,827,234 (-)NCBIMGSCv36mm8
Celera8110,163,776 - 110,166,440 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.06NCBI
Psmb10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,777,621 - 8,780,320 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,777,618 - 8,780,393 (+)NCBIChiLan1.0ChiLan1.0
PSMB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,461,054 - 77,463,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,372,482 - 83,374,805 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,275,764 - 48,278,108 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,663,344 - 67,666,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,663,344 - 67,666,359 (-)Ensemblpanpan1.1panPan2
PSMB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,560,750 - 81,563,571 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,561,056 - 81,563,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,551,024 - 81,553,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,996,365 - 81,998,896 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,996,380 - 81,998,889 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,822,575 - 81,825,106 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,504,707 - 81,507,236 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,146,923 - 82,149,454 (+)NCBIUU_Cfam_GSD_1.0
Psmb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,296,032 - 41,299,059 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,290,077 - 18,292,544 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,290,055 - 18,293,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,543,972 - 28,548,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,544,910 - 28,547,609 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap6p14-p15NCBI
PSMB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,502,616 - 59,505,584 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,503,246 - 59,505,521 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,227,805 - 22,230,927 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,442,478 - 18,445,731 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,442,865 - 18,445,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psmb10
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:28
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000026462
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat

Markers in Region
RH129859  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,834,761 - 33,834,928 (+)MAPPERmRatBN7.2
Rnor_6.01937,913,347 - 37,913,513NCBIRnor6.0
Rnor_5.01948,780,378 - 48,780,544UniSTSRnor5.0
RGSC_v3.41935,781,514 - 35,781,680UniSTSRGSC3.4
Celera1933,262,311 - 33,262,477UniSTS
RH 3.4 Map19317.7UniSTS
Cytogenetic Map19q12UniSTS
BI281208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,831,011 - 33,831,323 (+)MAPPERmRatBN7.2
Rnor_6.01937,909,597 - 37,909,908NCBIRnor6.0
Rnor_5.01948,776,628 - 48,776,939UniSTSRnor5.0
RGSC_v3.41935,777,764 - 35,778,075UniSTSRGSC3.4
Celera1933,258,561 - 33,258,872UniSTS
RH 3.4 Map19282.1UniSTS
Cytogenetic Map19q12UniSTS
Psmb10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21933,831,342 - 33,832,044 (+)MAPPERmRatBN7.2
Rnor_6.01937,909,928 - 37,910,629NCBIRnor6.0
Rnor_5.01948,776,959 - 48,777,660UniSTSRnor5.0
RGSC_v3.41935,778,095 - 35,778,796UniSTSRGSC3.4
Celera1933,258,892 - 33,259,593UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 5 7 74 35 41 11 5
Low 8 3 4 3
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000026361   ⟹   ENSRNOP00000026361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,827,229 - 33,829,140 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000026462   ⟹   ENSRNOP00000026462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,830,961 - 33,833,328 (-)Ensembl
Rnor_6.0 Ensembl1937,909,546 - 37,912,027 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094899   ⟹   ENSRNOP00000094160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,827,229 - 33,829,557 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099054   ⟹   ENSRNOP00000091409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,827,229 - 33,833,626 (-)Ensembl
RefSeq Acc Id: NM_001025637   ⟹   NP_001020808
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,740,808 - 50,743,292 (-)NCBI
mRatBN7.21933,830,958 - 33,833,442 (-)NCBI
Rnor_6.01937,909,543 - 37,912,027 (-)NCBI
Rnor_5.01948,776,574 - 48,779,058 (-)NCBI
RGSC_v3.41935,777,710 - 35,780,194 (-)RGD
Celera1933,258,507 - 33,260,991 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001020808 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98835 (Get FASTA)   NCBI Sequence Viewer  
  EDL92421 (Get FASTA)   NCBI Sequence Viewer  
  EDL92422 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026462
  ENSRNOP00000026462.5
  ENSRNOP00000091409.1
  ENSRNOP00000094160.1
  ENSRNOP00055003739
GenBank Protein Q4KM35 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020808   ⟸   NM_001025637
- UniProtKB: Q4KM35 (UniProtKB/Swiss-Prot),   A6IYU3 (UniProtKB/TrEMBL),   A0A8L2UK72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026462   ⟸   ENSRNOT00000026462
RefSeq Acc Id: ENSRNOP00000091409   ⟸   ENSRNOT00000099054
RefSeq Acc Id: ENSRNOP00000026361   ⟸   ENSRNOT00000026361
RefSeq Acc Id: ENSRNOP00000094160   ⟸   ENSRNOT00000094899
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM35-F1-model_v2 AlphaFold Q4KM35 1-273 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701094
Promoter ID:EPDNEW_R11618
Type:multiple initiation site
Name:Psmb10_1
Description:proteasome subunit beta 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,912,032 - 37,912,092EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307428 AgrOrtholog
BioCyc Gene G2FUF-5800 BioCyc
Ensembl Genes ENSRNOG00000019353 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000019494 Ensembl
  ENSRNOG00055003240 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000026462 ENTREZGENE
  ENSRNOT00000026462.8 UniProtKB/TrEMBL
  ENSRNOT00000094899.1 UniProtKB/TrEMBL
  ENSRNOT00000099054.1 UniProtKB/TrEMBL
  ENSRNOT00055005035 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7378841 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Proteasome_bsu_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report rno:291983 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:112890 IMAGE-MGC_LOAD
NCBI Gene 291983 ENTREZGENE
PANTHER CHYMOTRYPSIN-LIKE PROTEASE CTRL-1 UniProtKB/TrEMBL
  CHYMOTRYPSIN-RELATED UniProtKB/TrEMBL
  METALLOPROTEASE TLDD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA TYPE-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pr_beta_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PhenoGen Psmb10 PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
  PROTEASOME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019353 RatGTEx
  ENSRNOG00000019494 RatGTEx
  ENSRNOG00055003240 RatGTEx
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/TrEMBL
  SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AFJ4_RAT UniProtKB/TrEMBL
  A0A8I6AKB6_RAT UniProtKB/TrEMBL
  A0A8L2UK72 ENTREZGENE, UniProtKB/TrEMBL
  A6IYU3 ENTREZGENE, UniProtKB/TrEMBL
  A6IYU4_RAT UniProtKB/TrEMBL
  PSB10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psmb10  proteasome 20S subunit beta 10  Psmb10  proteasome subunit beta 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psmb10  proteasome subunit beta 10  Psmb10  proteasome (prosome, macropain) subunit, beta type 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Psmb10  proteasome (prosome, macropain) subunit, beta type 10  Psmb10_predicted  proteasome (prosome, macropain) subunit, beta type 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Psmb10_predicted  proteasome (prosome, macropain) subunit, beta type 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED