Thsd7b (thrombospondin type 1 domain containing 7B) - Rat Genome Database

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Gene: Thsd7b (thrombospondin type 1 domain containing 7B) Rattus norvegicus
Analyze
Symbol: Thsd7b
Name: thrombospondin type 1 domain containing 7B
RGD ID: 1306938
Description: Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC289007; RGD1306938; similar to KIAA1679 protein; thrombospondin type-1 domain-containing protein 7B; thrombospondin, type I, domain containing 7B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81343,320,895 - 44,219,546 (+)NCBIGRCr8
mRatBN7.21340,768,567 - 41,667,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1340,768,570 - 41,666,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1343,498,303 - 44,263,292 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01344,786,463 - 45,551,378 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01342,032,287 - 42,805,969 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01346,026,943 - 46,931,619 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1346,169,963 - 46,930,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01351,235,509 - 51,905,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01351,943,558 - 51,990,395 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41342,331,428 - 43,117,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11342,345,470 - 43,131,535 (+)NCBI
Celera1341,268,004 - 42,021,350 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Thsd7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81343,320,895 - 44,219,546 (+)NCBIGRCr8
mRatBN7.21340,768,567 - 41,667,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1340,768,570 - 41,666,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1343,498,303 - 44,263,292 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01344,786,463 - 45,551,378 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01342,032,287 - 42,805,969 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01346,026,943 - 46,931,619 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1346,169,963 - 46,930,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01351,235,509 - 51,905,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01351,943,558 - 51,990,395 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41342,331,428 - 43,117,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11342,345,470 - 43,131,535 (+)NCBI
Celera1341,268,004 - 42,021,350 (+)NCBICelera
Cytogenetic Map13q13NCBI
THSD7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,765,545 - 137,677,718 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,765,545 - 137,677,718 (+)EnsemblGRCh38hg38GRCh38
GRCh372137,523,115 - 138,435,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362137,464,932 - 138,151,757 (+)NCBINCBI36Build 36hg18NCBI36
Celera2131,462,164 - 132,148,761 (+)NCBICelera
Cytogenetic Map2q22.1NCBI
HuRef2129,738,907 - 130,425,733 (+)NCBIHuRef
CHM1_12137,753,052 - 138,439,830 (+)NCBICHM1_1
T2T-CHM13v2.02137,211,511 - 138,123,604 (+)NCBIT2T-CHM13v2.0
Thsd7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,201,010 - 130,147,015 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,201,039 - 130,147,015 (+)EnsemblGRCm39 Ensembl
GRCm381129,273,190 - 130,219,278 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,273,302 - 130,219,278 (+)EnsemblGRCm38mm10GRCm38
MGSCv371131,169,881 - 132,115,855 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,101,020 - 132,046,824 (+)NCBIMGSCv36mm8
Celera1131,901,059 - 132,847,574 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.55NCBI
Thsd7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554404,169,311 - 4,833,850 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554404,054,497 - 4,834,962 (+)NCBIChiLan1.0ChiLan1.0
THSD7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21337,253,972 - 38,168,324 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B37,268,942 - 38,183,293 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B22,185,005 - 23,099,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B140,831,777 - 141,744,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B140,948,485 - 141,744,341 (+)Ensemblpanpan1.1panPan2
THSD7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11939,589,184 - 40,318,314 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1939,589,179 - 40,317,206 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1939,837,099 - 40,566,206 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01941,031,741 - 41,756,082 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1940,907,729 - 41,756,082 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11939,689,013 - 40,424,177 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01939,842,736 - 40,565,415 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01941,073,143 - 41,798,343 (+)NCBIUU_Cfam_GSD_1.0
Thsd7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303102,386,739 - 103,196,686 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646938,419,415 - 39,121,981 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646938,421,034 - 39,231,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THSD7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1514,088,999 - 15,046,042 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11514,088,995 - 15,610,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21516,503,625 - 17,149,573 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THSD7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11020,967,111 - 21,863,386 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666061538,052 - 1,434,919 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thsd7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473236,426,431 - 37,262,668 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473236,263,704 - 37,263,010 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thsd7b
6706 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:39
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000005212
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
2292232Pur16Proteinuria QTL 1617.2urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133615572341961389Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat

Markers in Region
D13Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21340,949,793 - 40,949,915 (+)MAPPERmRatBN7.2
Rnor_6.01346,214,730 - 46,214,851NCBIRnor6.0
Rnor_5.01351,279,941 - 51,280,062UniSTSRnor5.0
RGSC_v3.41342,377,193 - 42,377,501RGDRGSC3.4
RGSC_v3.41342,377,290 - 42,377,411UniSTSRGSC3.4
RGSC_v3.11342,391,333 - 42,391,454RGD
Celera1341,311,751 - 41,311,872UniSTS
RH 3.4 Map13101.5RGD
RH 3.4 Map13101.5UniSTS
RH 2.0 Map13280.1RGD
SHRSP x BN Map1310.1699RGD
Cytogenetic Map13q12-q13UniSTS
D13Rat88  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,184,022 - 41,184,251 (+)MAPPERmRatBN7.2
Rnor_6.01346,444,570 - 46,444,796NCBIRnor6.0
Rnor_5.01351,509,286 - 51,509,512UniSTSRnor5.0
RGSC_v3.41342,627,611 - 42,627,837UniSTSRGSC3.4
RGSC_v3.41342,627,610 - 42,627,837RGDRGSC3.4
RGSC_v3.11342,641,654 - 42,641,880RGD
Celera1341,544,260 - 41,544,488UniSTS
RH 3.4 Map13107.8UniSTS
RH 3.4 Map13107.8RGD
RH 2.0 Map13290.4RGD
SHRSP x BN Map1310.2099RGD
FHH x ACI Map1312.72RGD
Cytogenetic Map13q12-q13UniSTS
MHAa78b9.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,241,671 - 41,241,839 (+)MAPPERmRatBN7.2
Rnor_6.01346,502,216 - 46,502,383NCBIRnor6.0
Rnor_5.01351,566,932 - 51,567,099UniSTSRnor5.0
RGSC_v3.41342,686,114 - 42,686,281UniSTSRGSC3.4
Celera1341,601,914 - 41,602,081UniSTS
Cytogenetic Map13q12-q13UniSTS
RH144293  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21340,769,247 - 40,769,418 (+)MAPPERmRatBN7.2
Rnor_6.01346,027,645 - 46,027,815NCBIRnor6.0
Rnor_5.01351,094,794 - 51,094,964UniSTSRnor5.0
RGSC_v3.41342,193,986 - 42,194,156UniSTSRGSC3.4
Celera1341,131,197 - 41,131,367UniSTS
RH 3.4 Map6839.19UniSTS
Cytogenetic Map13q12-q13UniSTS
AU048182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,033,254 - 41,033,418 (+)MAPPERmRatBN7.2
Rnor_6.01346,298,636 - 46,298,799NCBIRnor6.0
Rnor_5.01351,363,200 - 51,363,363UniSTSRnor5.0
Celera1341,394,206 - 41,394,368UniSTS
Cytogenetic Map13q12-q13UniSTS
AU047298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21341,397,341 - 41,397,592 (+)MAPPERmRatBN7.2
Rnor_6.01346,659,422 - 46,659,674NCBIRnor6.0
Rnor_5.01351,722,159 - 51,722,411UniSTSRnor5.0
RGSC_v3.41342,842,379 - 42,842,629UniSTSRGSC3.4
Celera1341,755,629 - 41,755,879UniSTS
Cytogenetic Map13q12-q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 36 1
Low 6 13 4 11 4 38 22 31
Below cutoff 1 33 13 6 8 6 5 5 12 9 11 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005212   ⟹   ENSRNOP00000005212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1340,768,570 - 41,666,501 (+)Ensembl
Rnor_6.0 Ensembl1346,169,963 - 46,930,858 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115425   ⟹   ENSRNOP00000081745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1340,768,570 - 41,666,501 (+)Ensembl
RefSeq Acc Id: NM_001191669   ⟹   NP_001178598
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81343,458,345 - 44,218,785 (+)NCBI
mRatBN7.21340,906,028 - 41,666,501 (+)NCBI
Rnor_6.01346,169,963 - 46,930,858 (+)NCBI
Rnor_5.01351,235,509 - 51,905,879 (+)NCBI
Rnor_5.01351,943,558 - 51,990,395 (+)NCBI
Celera1341,268,004 - 42,021,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090425   ⟹   XP_038946353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81343,320,895 - 44,219,546 (+)NCBI
mRatBN7.21340,768,567 - 41,667,262 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178598   ⟸   NM_001191669
- Peptide Label: precursor
- UniProtKB: F1LPD7 (UniProtKB/TrEMBL),   A0A8I5ZSV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005212   ⟸   ENSRNOT00000005212
RefSeq Acc Id: XP_038946353   ⟸   XM_039090425
- Peptide Label: isoform X1
- UniProtKB: F1LPD7 (UniProtKB/TrEMBL),   A0A8I5ZSV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081745   ⟸   ENSRNOT00000115425
Protein Domains
Spondin-like TSP1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LPD7-F1-model_v2 AlphaFold F1LPD7 1-1607 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306938 AgrOrtholog
BioCyc Gene G2FUF-18386 BioCyc
Ensembl Genes ENSRNOG00000003878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005212 ENTREZGENE
  ENSRNOT00000005212.6 UniProtKB/TrEMBL
  ENSRNOT00000115425 ENTREZGENE
  ENSRNOT00000115425.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
InterPro Thrombospondin_1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
  TSP1_spondin_dom UniProtKB/TrEMBL
KEGG Report rno:289007 UniProtKB/TrEMBL
NCBI Gene 289007 ENTREZGENE
PANTHER SPONDIN UniProtKB/TrEMBL
  THROMBOSPONDIN TYPE-1 DOMAIN-CONTAINING PROTEIN 7B UniProtKB/TrEMBL
Pfam TSP1_ADAMTS UniProtKB/TrEMBL
  TSP1_spondin UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PhenoGen Thsd7b PhenoGen
PROSITE TSP1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003878 RatGTEx
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP TSP1 UniProtKB/TrEMBL
UniProt A0A8I5ZSV0 ENTREZGENE, UniProtKB/TrEMBL
  F1LPD7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Thsd7b  thrombospondin type 1 domain containing 7B  Thsd7b  thrombospondin, type I, domain containing 7B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Thsd7b  thrombospondin, type I, domain containing 7B  RGD1306938_predicted  similar to KIAA1679 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306938_predicted  similar to KIAA1679 protein (predicted)  LOC289007_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289007_predicted  similar to KIAA1679 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL