Atp6v0d2 (ATPase H+ transporting V0 subunit D2) - Rat Genome Database

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Gene: Atp6v0d2 (ATPase H+ transporting V0 subunit D2) Rattus norvegicus
Analyze
Symbol: Atp6v0d2
Name: ATPase H+ transporting V0 subunit D2
RGD ID: 1306900
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in vacuolar acidification and vacuolar transport. Located in apical plasma membrane and endosome. Orthologous to human ATP6V0D2 (ATPase H+ transporting V0 subunit d2); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2; ATPase, H+ transporting, lysosomal V0 subunit D2; ATPase, H+ transporting, V0 subunit D; ATPase, H+ transporting, V0 subunit D, isoform 2; LOC297932; MGC109196; V-ATPase subunit d 2; V-type proton ATPase subunit d 2; vacuolar proton pump subunit d 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8538,133,151 - 38,182,245 (-)NCBIGRCr8
mRatBN7.2533,336,257 - 33,385,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx535,456,598 - 35,505,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0537,048,803 - 37,097,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0536,988,308 - 37,037,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0533,843,591 - 33,892,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0538,499,081 - 38,547,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4534,476,045 - 34,524,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1534,476,226 - 34,525,174 (-)NCBI
Celera532,423,635 - 32,472,662 (-)NCBICelera
Cytogenetic Map5q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,4-dioxane  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-aminopurine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dichloroaniline  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
Aroclor 1254  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (EXP,ISO)
choline  (ISO)
cis-caffeic acid  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
desferrioxamine B  (ISO)
dextran sulfate  (ISO)
dimethyl fumarate  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
fenamidone  (ISO)
folic acid  (ISO)
furan  (EXP,ISO)
GW 4064  (ISO)
indole-3-methanol  (EXP)
L-methionine  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
mangiferin  (ISO)
metformin  (EXP)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
naringin  (ISO)
niclosamide  (ISO)
ozone  (ISO)
panobinostat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
pravastatin  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sclareol  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
styrene  (EXP)
succimer  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
Testosterone propionate  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
trametinib  (ISO)
trans-caffeic acid  (ISO)
tremolite asbestos  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Distinct expression patterns of different subunit isoforms of the V-ATPase in the rat epididymis. Pietrement C, etal., Biol Reprod. 2006 Jan;74(1):185-94. Epub 2005 Sep 28.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Vacuolar H+-ATPase d2 subunit: molecular characterization, developmental regulation, and localization to specialized proton pumps in kidney and bone. Smith AN, etal., J Am Soc Nephrol. 2005 May;16(5):1245-56. Epub 2005 Mar 30.
Additional References at PubMed
PMID:9670047   PMID:12477932   PMID:18752060   PMID:19056867   PMID:23376485  


Genomics

Comparative Map Data
Atp6v0d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8538,133,151 - 38,182,245 (-)NCBIGRCr8
mRatBN7.2533,336,257 - 33,385,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx535,456,598 - 35,505,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0537,048,803 - 37,097,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0536,988,308 - 37,037,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0533,843,591 - 33,892,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0538,499,081 - 38,547,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4534,476,045 - 34,524,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1534,476,226 - 34,525,174 (-)NCBI
Celera532,423,635 - 32,472,662 (-)NCBICelera
Cytogenetic Map5q13NCBI
ATP6V0D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38886,098,910 - 86,154,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,987,323 - 86,154,225 (+)EnsemblGRCh38hg38GRCh38
GRCh37887,111,139 - 87,166,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36887,180,255 - 87,235,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 34887,180,254 - 87,235,570NCBI
Celera883,305,507 - 83,360,717 (+)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef882,320,757 - 82,376,003 (+)NCBIHuRef
CHM1_1887,152,442 - 87,207,669 (+)NCBICHM1_1
T2T-CHM13v2.0887,216,307 - 87,271,615 (+)NCBIT2T-CHM13v2.0
Atp6v0d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39419,876,838 - 19,922,566 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm39 Ensembl
GRCm38419,876,838 - 19,922,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm38mm10GRCm38
MGSCv37419,803,985 - 19,849,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36419,803,988 - 19,849,713 (-)NCBIMGSCv36mm8
Celera419,634,311 - 19,678,717 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map47.67NCBI
Atp6v0d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,778,462 - 3,836,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,778,587 - 3,832,973 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27103,507,650 - 103,563,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1879,045,991 - 79,101,384 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0882,800,353 - 82,855,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1884,771,532 - 84,826,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl884,771,427 - 84,826,406 (+)Ensemblpanpan1.1panPan2
ATP6V0D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,336,304 - 32,378,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530346,973,049 - 47,018,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544774,125 - 819,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544774,154 - 819,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,660,240 - 55,715,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1881,280,642 - 81,336,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl881,280,888 - 81,337,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603959,615,834 - 59,691,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v0d2
238 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:27
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000009334
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat

Markers in Region
D5Uwm51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2533,350,468 - 33,350,661 (+)MAPPERmRatBN7.2
Rnor_6.0533,857,805 - 33,857,997NCBIRnor6.0
Rnor_5.0538,513,291 - 38,513,483UniSTSRnor5.0
RGSC_v3.4534,490,256 - 34,490,449RGDRGSC3.4
RGSC_v3.4534,490,257 - 34,490,449UniSTSRGSC3.4
RGSC_v3.1534,490,435 - 34,490,628RGD
Celera532,437,836 - 32,438,028UniSTS
Cytogenetic Map5q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 29 1 1
Low 8 7 2 7 2 2 12 8
Below cutoff 2 3 23 17 3 17 6 8 37 4 15 2 6

Sequence


RefSeq Acc Id: ENSRNOT00000009334   ⟹   ENSRNOP00000009334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)Ensembl
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)Ensembl
RefSeq Acc Id: NM_001011972   ⟹   NP_001011972
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8538,133,151 - 38,182,245 (-)NCBI
mRatBN7.2533,336,257 - 33,385,354 (-)NCBI
Rnor_6.0533,843,591 - 33,892,446 (-)NCBI
Rnor_5.0538,499,081 - 38,547,691 (-)NCBI
RGSC_v3.4534,476,045 - 34,524,995 (-)RGD
Celera532,423,635 - 32,472,662 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001011972 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89917 (Get FASTA)   NCBI Sequence Viewer  
  EDL98503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009334
  ENSRNOP00000009334.5
  ENSRNOP00055000485
  ENSRNOP00060000719
  ENSRNOP00065020966
GenBank Protein Q5FVL0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001011972   ⟸   NM_001011972
- UniProtKB: Q5FVL0 (UniProtKB/Swiss-Prot),   A6IID3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009334   ⟸   ENSRNOT00000009334

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVL0-F1-model_v2 AlphaFold Q5FVL0 1-350 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693590
Promoter ID:EPDNEW_R4115
Type:initiation region
Name:Atp6v0d2_1
Description:ATPase H+ transporting V0 subunit D2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0533,892,459 - 33,892,519EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306900 AgrOrtholog
BioCyc Gene G2FUF-41834 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000006926 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055000351 UniProtKB/Swiss-Prot
  ENSRNOG00060001084 UniProtKB/Swiss-Prot
  ENSRNOG00065016074 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009334 ENTREZGENE
  ENSRNOT00000009334.7 UniProtKB/Swiss-Prot
  ENSRNOT00055000623 UniProtKB/Swiss-Prot
  ENSRNOT00060001488 UniProtKB/Swiss-Prot
  ENSRNOT00065026719 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.132.50 UniProtKB/Swiss-Prot
  1.20.1690.10 UniProtKB/Swiss-Prot
  ATP synthase (C/AC39) subunit, domain 3 UniProtKB/TrEMBL
  V-type ATP synthase subunit C domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7306609 IMAGE-MGC_LOAD
InterPro ATPase_su_C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_V0-cplx_csu/dsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_V0-cplx_dsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-type_ATPase_su_c/d_dom_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-type_ATPase_suC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297932 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109196 IMAGE-MGC_LOAD
NCBI Gene 297932 ENTREZGENE
PANTHER PTHR11028 UniProtKB/Swiss-Prot
  V-TYPE PROTON ATPASE SUBUNIT D 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VACUOLAR ATP SYNTHASE SUBUNIT AC39 UniProtKB/TrEMBL
Pfam vATP-synt_AC39 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v0d2 PhenoGen
PIRSF V-ATP_synth_D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006926 RatGTEx
  ENSRNOG00055000351 RatGTEx
  ENSRNOG00060001084 RatGTEx
  ENSRNOG00065016074 RatGTEx
Superfamily-SCOP SSF103486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IID3 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVL0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Atp6v0d2  ATPase H+ transporting V0 subunit D2  Atp6v0d2  ATPase, H+ transporting, lysosomal V0 subunit D2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Atp6v0d2  ATPase, H+ transporting, lysosomal V0 subunit D2  Atp6v0d2  ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Atp6v0d2  ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2  Atp6v0d2  ATPase, H+ transporting, lysosomal V0 subunit D2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Atp6v0d2  ATPase, H+ transporting, lysosomal V0 subunit D2  Atp6v0d2  ATPase, H+ transporting, V0 subunit D, isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Atp6v0d2  ATPase, H+ transporting, V0 subunit D, isoform 2  Atp6v0d2_predicted  ATPase, H+ transporting, V0 subunit D, isoform 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Atp6v0d2_predicted  ATPase, H+ transporting, V0 subunit D, isoform 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED