Prss34 (protease, serine, 34) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Prss34 (protease, serine, 34) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Prss34
Name: protease, serine, 34
RGD ID: 1306667
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular matrix. Predicted to be active in extracellular region; INTERACTS WITH bisphenol A; cadmium dichloride; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC287140; mastin
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,820,403 - 14,822,204 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,820,447 - 14,822,204 (+)EnsemblGRCr8
mRatBN7.21014,315,913 - 14,317,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,315,955 - 14,317,712 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,056,765 - 19,058,518 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,545,622 - 18,547,375 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,044,839 - 14,046,592 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1017,744,045 - 17,745,802 (+)NCBI
Lyon_Normotensive1018,405,687 - 18,407,444 (+)NCBI
Lyon_Hypertensive1020,097,355 - 20,099,112 (+)NCBI
F344_StmMcwi1020,084,340 - 20,086,093 (+)NCBI
Rnor_6.01014,656,812 - 14,658,569 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,656,812 - 14,658,569 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01014,474,511 - 14,476,268 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41014,546,640 - 14,548,397 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,988,248 - 13,990,005 (+)NCBICelera
RGSC_v3.11014,535,473 - 14,548,238 (+)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Prss34
40 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:129
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000024904
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 2 74 33 265 95 212 8 60 225 60 6 548 381 293 240 46 123 152 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000024904   ⟹   ENSRNOP00000024904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,820,447 - 14,822,204 (+)Ensembl
mRatBN7.2 Ensembl1014,315,955 - 14,317,712 (+)Ensembl
Rnor_6.0 Ensembl1014,656,812 - 14,658,569 (+)Ensembl
RefSeq Acc Id: NM_001105772   ⟹   NP_001099242
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,820,447 - 14,822,204 (+)NCBI
mRatBN7.21014,315,955 - 14,317,712 (+)NCBI
Dahl_SR_JrHsd1017,744,045 - 17,745,802 (+)NCBI
Lyon_Normotensive1018,405,687 - 18,407,444 (+)NCBI
Lyon_Hypertensive1020,097,355 - 20,099,112 (+)NCBI
F344_StmMcwi1020,084,340 - 20,086,093 (+)NCBI
Rnor_6.01014,656,812 - 14,658,569 (+)NCBI
Rnor_5.01014,474,511 - 14,476,268 (+)NCBI
RGSC_v3.41014,546,640 - 14,548,397 (+)RGD
Celera1013,988,248 - 13,990,005 (+)RGD
Sequence:
RefSeq Acc Id: XM_039085362   ⟹   XP_038941290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,820,403 - 14,821,648 (+)NCBI
mRatBN7.21014,315,913 - 14,317,160 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099242 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941290 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03922 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024904
  ENSRNOP00000024904.5
RefSeq Acc Id: NP_001099242   ⟸   NM_001105772
- Peptide Label: precursor
- UniProtKB: D4ACZ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024904   ⟸   ENSRNOT00000024904
RefSeq Acc Id: XP_038941290   ⟸   XM_039085362
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACZ0-F1-model_v2 AlphaFold D4ACZ0 1-316 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306667 AgrOrtholog
BioCyc Gene G2FUF-25791 BioCyc
Ensembl Genes ENSRNOG00000018466 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024904 ENTREZGENE
  ENSRNOT00000024904.7 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Peptidase_S1/S6_AS UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1_S6 UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Ser/Cys_Pept_Trypsin-like UniProtKB/TrEMBL
KEGG Report rno:287140 UniProtKB/TrEMBL
NCBI Gene 287140 ENTREZGENE
PANTHER CHYMOTRYPSIN-LIKE PROTEASE CTRL-1-RELATED UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEASE SERINE UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PhenoGen Prss34 PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018466 RatGTEx
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Pept_Ser_Cys UniProtKB/TrEMBL
UniProt D4ACZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Prss34  protease, serine, 34   Prss34_predicted  protease, serine, 34 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Prss34_predicted  protease, serine, 34 (predicted)      Symbol and Name status set to approved 70820 APPROVED