Oscp1 (organic solute carrier partner 1) - Rat Genome Database

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Gene: Oscp1 (organic solute carrier partner 1) Rattus norvegicus
Analyze
Symbol: Oscp1
Name: organic solute carrier partner 1
RGD ID: 1306596
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in xenobiotic detoxification by transmembrane export across the plasma membrane. Predicted to be located in basal plasma membrane. Predicted to be part of small ribosomal subunit. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human OSCP1 (organic solute carrier partner 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362595; MGC116206; organic solute carrier protein 1; RGD1306596; similar to RIKEN cDNA 1810007P19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,618,186 - 143,649,765 (+)NCBIGRCr8
mRatBN7.25138,334,552 - 138,365,220 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,333,893 - 138,366,822 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,044,926 - 141,075,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,814,937 - 142,845,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,815,979 - 142,846,524 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,067,391 - 144,099,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,067,416 - 144,098,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,837,000 - 147,867,535 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,410,786 - 145,441,442 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,420,778 - 145,791,764 (+)NCBI
Celera5136,844,930 - 136,875,651 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16006562   PMID:16854843   PMID:17884105   PMID:18324622   PMID:19727524   PMID:24270810  


Genomics

Comparative Map Data
Oscp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,618,186 - 143,649,765 (+)NCBIGRCr8
mRatBN7.25138,334,552 - 138,365,220 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,333,893 - 138,366,822 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,044,926 - 141,075,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,814,937 - 142,845,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,815,979 - 142,846,524 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,067,391 - 144,099,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,067,416 - 144,098,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,837,000 - 147,867,535 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,410,786 - 145,441,442 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,420,778 - 145,791,764 (+)NCBI
Celera5136,844,930 - 136,875,651 (+)NCBICelera
Cytogenetic Map5q36NCBI
OSCP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,417,906 - 36,450,451 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,415,827 - 36,450,451 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,883,507 - 36,916,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,656,094 - 36,688,639 (-)NCBINCBI36Build 36hg18NCBI36
Celera135,159,276 - 35,191,869 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef135,000,131 - 35,032,651 (-)NCBIHuRef
CHM1_1136,999,633 - 37,032,214 (-)NCBICHM1_1
T2T-CHM13v2.0136,280,766 - 36,313,305 (-)NCBIT2T-CHM13v2.0
Oscp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394125,949,436 - 125,985,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4125,952,358 - 125,985,988 (+)EnsemblGRCm39 Ensembl
GRCm384126,055,643 - 126,092,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,058,565 - 126,092,195 (+)EnsemblGRCm38mm10GRCm38
MGSCv374125,735,809 - 125,766,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,560,905 - 125,591,638 (+)NCBIMGSCv36mm8
Celera4124,389,203 - 124,419,774 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map459.82NCBI
Oscp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,366,242 - 14,398,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,366,242 - 14,398,181 (-)NCBIChiLan1.0ChiLan1.0
OSCP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,395,745 - 190,432,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,517,082 - 189,554,187 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,681,787 - 35,716,220 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,849,204 - 36,881,539 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,849,204 - 36,881,539 (-)Ensemblpanpan1.1panPan2
OSCP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,857,122 - 5,876,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,852,139 - 5,876,450 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,088,971 - 6,119,466 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,981,634 - 6,012,225 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,981,588 - 6,012,225 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,835,103 - 5,865,638 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,902,849 - 5,933,366 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,917,906 - 5,948,490 (+)NCBIUU_Cfam_GSD_1.0
Oscp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,008,082 - 53,039,750 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,830,650 - 18,864,713 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,832,866 - 18,864,540 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSCP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,501,132 - 92,537,508 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,501,124 - 92,537,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
OSCP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,413,972 - 96,444,799 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,414,034 - 96,444,824 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603320,294,499 - 20,325,072 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oscp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,315,459 - 19,342,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,318,661 - 19,342,308 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Oscp1
267 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:16
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000037246
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat

Markers in Region
UniSTS:235024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25138,365,001 - 138,365,177 (+)MAPPERmRatBN7.2
Rnor_6.05144,097,855 - 144,098,030NCBIRnor6.0
Rnor_5.05147,867,314 - 147,867,489UniSTSRnor5.0
RGSC_v3.45145,441,224 - 145,441,399UniSTSRGSC3.4
Celera5136,875,433 - 136,875,608UniSTS
Cytogenetic Map5q36UniSTS
MARC_9759-9760:996688576:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,904,138 - 54,904,449 (+)MAPPERmRatBN7.2
mRatBN7.25138,350,339 - 138,350,648 (+)MAPPERmRatBN7.2
Rnor_6.05144,083,176 - 144,083,484NCBIRnor6.0
Rnor_6.01759,804,014 - 59,804,324NCBIRnor6.0
Rnor_5.01761,593,283 - 61,593,593UniSTSRnor5.0
Rnor_5.05147,852,636 - 147,852,944UniSTSRnor5.0
RGSC_v3.45145,426,545 - 145,426,853UniSTSRGSC3.4
RGSC_v3.41763,457,903 - 63,458,213UniSTSRGSC3.4
Celera1756,244,169 - 56,244,479UniSTS
Celera5136,860,756 - 136,861,064UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map17q12.1UniSTS
Cytogenetic Map18q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 4 74 28 38 10
Low 3 43 53 37 19 37 8 11 7 3 1 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000037246   ⟹   ENSRNOP00000034112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,334,593 - 138,366,822 (+)Ensembl
Rnor_6.0 Ensembl5144,067,416 - 144,098,207 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097196   ⟹   ENSRNOP00000094216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,333,893 - 138,366,822 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102093   ⟹   ENSRNOP00000081074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5138,334,593 - 138,350,765 (+)Ensembl
RefSeq Acc Id: NM_001029923   ⟹   NP_001025094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,619,155 - 143,649,763 (+)NCBI
mRatBN7.25138,334,626 - 138,365,220 (+)NCBI
Rnor_6.05144,067,466 - 144,098,073 (+)NCBI
Rnor_5.05147,837,000 - 147,867,535 (+)NCBI
RGSC_v3.45145,410,786 - 145,441,442 (+)RGD
Celera5136,844,930 - 136,875,651 (+)RGD
Sequence:
RefSeq Acc Id: XM_017593508   ⟹   XP_017448997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85143,618,186 - 143,649,765 (+)NCBI
mRatBN7.25138,334,552 - 138,365,220 (+)NCBI
Rnor_6.05144,067,391 - 144,099,693 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001025094   ⟸   NM_001029923
- UniProtKB: Q4QQS3 (UniProtKB/Swiss-Prot),   A7VLG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448997   ⟸   XM_017593508
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AH97 (UniProtKB/TrEMBL),   A7VLG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034112   ⟸   ENSRNOT00000037246
RefSeq Acc Id: ENSRNOP00000094216   ⟸   ENSRNOT00000097196
RefSeq Acc Id: ENSRNOP00000081074   ⟸   ENSRNOT00000102093

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQS3-F1-model_v2 AlphaFold Q4QQS3 1-379 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694026
Promoter ID:EPDNEW_R4550
Type:initiation region
Name:Oscp1_1
Description:organic solute carrier partner 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05144,067,433 - 144,067,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306596 AgrOrtholog
BioCyc Gene G2FUF-39909 BioCyc
Ensembl Genes ENSRNOG00000026978 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012759 UniProtKB/Swiss-Prot
  ENSRNOG00060013991 UniProtKB/Swiss-Prot
  ENSRNOG00065029211 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000037246 ENTREZGENE
  ENSRNOT00000037246.6 UniProtKB/Swiss-Prot
  ENSRNOT00000097196.1 UniProtKB/TrEMBL
  ENSRNOT00000102093.1 UniProtKB/TrEMBL
  ENSRNOT00055021806 UniProtKB/Swiss-Prot
  ENSRNOT00060023943 UniProtKB/Swiss-Prot
  ENSRNOT00065050450 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.420.80 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7457181 IMAGE-MGC_LOAD
InterPro OSCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S11 UniProtKB/TrEMBL
  Ribosomal_S11_CS UniProtKB/TrEMBL
  Ribosomal_S11_sf UniProtKB/TrEMBL
KEGG Report rno:362595 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116206 IMAGE-MGC_LOAD
NCBI Gene 362595 ENTREZGENE
PANTHER PROTEIN OSCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21439 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Oscp1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S11 UniProtKB/TrEMBL
PhenoGen Oscp1 PhenoGen
PROSITE RIBOSOMAL_S11 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026978 RatGTEx
  ENSRNOG00055012759 RatGTEx
  ENSRNOG00060013991 RatGTEx
  ENSRNOG00065029211 RatGTEx
Superfamily-SCOP Translational machinery components UniProtKB/TrEMBL
UniProt A0A8I5ZUB2_RAT UniProtKB/TrEMBL
  A0A8I6AH97 ENTREZGENE, UniProtKB/TrEMBL
  A7VLG3 ENTREZGENE, UniProtKB/TrEMBL
  OSCP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Oscp1  organic solute carrier partner 1  Oscp1  organic solute carrier protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-03 Oscp1  organic solute carrier protein 1  RGD1306596  similar to RIKEN cDNA 1810007P19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306596  similar to RIKEN cDNA 1810007P19  RGD1306596_predicted  similar to RIKEN cDNA 1810007P19 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306596_predicted  similar to RIKEN cDNA 1810007P19 (predicted)  LOC362595_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362595_predicted  similar to RIKEN cDNA 1810007P19 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL