Dync2i1 (dynein 2 intermediate chain 1) - Rat Genome Database

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Gene: Dync2i1 (dynein 2 intermediate chain 1) Rattus norvegicus
Analyze
Symbol: Dync2i1
Name: dynein 2 intermediate chain 1
RGD ID: 1306493
Description: Predicted to enable dynein light chain binding activity. Predicted to be involved in cilium assembly; embryonic skeletal system morphogenesis; and intraciliary retrograde transport. Predicted to be located in cilium and pericentriolar material. Predicted to be part of cytoplasmic dynein complex. Predicted to colocalize with ciliary base and microtubule cytoskeleton. Human ortholog(s) of this gene implicated in short-rib thoracic dysplasia 8 with or without polydactyly. Orthologous to human DYNC2I1 (dynein 2 intermediate chain 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytoplasmic dynein 2 intermediate chain 1; LOC314523; RGD1306493; similar to hypothetical protein FLJ10300; WD repeat domain 60; WD repeat-containing protein 60; Wdr60
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,276,441 - 143,333,006 (-)NCBIGRCr8
mRatBN7.26137,133,418 - 137,189,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6140,568,754 - 140,623,876 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06137,193,080 - 137,248,128 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06137,741,103 - 137,796,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06144,069,077 - 144,124,975 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,069,022 - 144,123,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06153,007,323 - 153,063,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46143,478,863 - 143,534,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16143,485,229 - 143,566,989 (-)NCBI
Celera6134,799,216 - 134,853,660 (-)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22326026   PMID:22664934   PMID:23376485   PMID:23910462   PMID:25205765   PMID:25830415  


Genomics

Comparative Map Data
Dync2i1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,276,441 - 143,333,006 (-)NCBIGRCr8
mRatBN7.26137,133,418 - 137,189,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6140,568,754 - 140,623,876 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06137,193,080 - 137,248,128 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06137,741,103 - 137,796,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06144,069,077 - 144,124,975 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,069,022 - 144,123,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06153,007,323 - 153,063,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46143,478,863 - 143,534,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16143,485,229 - 143,566,989 (-)NCBI
Celera6134,799,216 - 134,853,660 (-)NCBICelera
Cytogenetic Map6q33NCBI
DYNC2I1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387158,839,245 - 158,958,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7158,856,558 - 158,956,747 (+)EnsemblGRCh38hg38GRCh38
GRCh377158,631,936 - 158,738,880 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,342,030 - 158,431,644 (+)NCBINCBI36Build 36hg18NCBI36
Celera7153,081,253 - 153,173,045 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7152,387,759 - 152,477,997 (+)NCBIHuRef
CHM1_17158,657,218 - 158,746,574 (+)NCBICHM1_1
T2T-CHM13v2.07160,062,945 - 160,186,808 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27157,852,877 - 157,941,993 (+)NCBI
Dync2i1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912116,169,881 - 116,226,665 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12116,169,882 - 116,226,642 (-)EnsemblGRCm39 Ensembl
GRCm3812116,206,261 - 116,263,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12116,206,262 - 116,263,022 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712117,445,523 - 117,501,498 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612110,442,837 - 110,464,344 (-)NCBIMGSCv36mm8
MGSCv3612116,681,849 - 116,704,995 (-)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1262.65NCBI
Dync2i1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555791,057,680 - 1,124,225 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555791,056,291 - 1,124,623 (+)NCBIChiLan1.0ChiLan1.0
DYNC2I1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26195,350,128 - 195,440,760 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1747,359,578 - 47,451,029 (+)NCBINHGRI_mPanPan1
PanPan1.17162,142,751 - 162,219,783 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7162,140,534 - 162,218,224 (+)Ensemblpanpan1.1panPan2
DYNC2I1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11620,810,735 - 20,859,441 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1620,810,345 - 20,859,037 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1621,315,043 - 21,362,048 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01622,541,514 - 22,590,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1622,548,896 - 22,590,144 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11620,909,158 - 20,957,846 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01621,493,172 - 21,541,474 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01621,547,449 - 21,595,738 (+)NCBIUU_Cfam_GSD_1.0
Dync2i1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118476,896 - 544,500 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936856725,076 - 792,725 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936856724,863 - 792,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC2I1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18508,276 - 553,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118507,163 - 555,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.218777,589 - 793,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC2I1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121126,798,952 - 126,828,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607223,337,118 - 23,375,865 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync2i1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800209,737 - 300,606 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624800213,589 - 301,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dync2i1
440 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:112
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000006144
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
D6Got189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,216,457 - 137,216,727 (+)MAPPERmRatBN7.2
Rnor_6.06144,152,817 - 144,153,084NCBIRnor6.0
Rnor_5.06153,089,470 - 153,089,737UniSTSRnor5.0
RGSC_v3.46143,563,372 - 143,563,640RGDRGSC3.4
RGSC_v3.46143,563,373 - 143,563,640UniSTSRGSC3.4
RGSC_v3.16143,569,560 - 143,569,827RGD
Celera6134,881,693 - 134,881,938UniSTS
RH 3.4 Map6937.4UniSTS
RH 3.4 Map6937.4RGD
RH 2.0 Map61190.6RGD
Cytogenetic Map6q33UniSTS
AI103063  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,143,148 - 137,143,254 (+)MAPPERmRatBN7.2
Rnor_6.06144,078,195 - 144,078,300NCBIRnor6.0
Rnor_5.06153,016,441 - 153,016,546UniSTSRnor5.0
RGSC_v3.46143,488,593 - 143,488,698UniSTSRGSC3.4
Celera6134,808,433 - 134,808,538UniSTS
RH 3.4 Map6944.41UniSTS
Cytogenetic Map6q33UniSTS
RH133577  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,133,448 - 137,133,628 (+)MAPPERmRatBN7.2
Rnor_6.06144,069,108 - 144,069,287NCBIRnor6.0
Rnor_6.06143,874,524 - 143,874,703NCBIRnor6.0
Rnor_5.06153,007,354 - 153,007,533UniSTSRnor5.0
Rnor_5.06152,815,354 - 152,815,533UniSTSRnor5.0
RGSC_v3.46143,478,894 - 143,479,073UniSTSRGSC3.4
Celera6134,799,247 - 134,799,426UniSTS
RH 3.4 Map6938.0UniSTS
Cytogenetic Map6q33UniSTS
BI303067  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,165,460 - 137,165,616 (+)MAPPERmRatBN7.2
Rnor_6.06144,100,501 - 144,100,656NCBIRnor6.0
Rnor_5.06153,038,747 - 153,038,902UniSTSRnor5.0
RGSC_v3.46143,510,901 - 143,511,056UniSTSRGSC3.4
Celera6134,830,679 - 134,830,834UniSTS
RH 3.4 Map6938.09UniSTS
Cytogenetic Map6q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 2 73 21 41 11
Low 3 43 55 39 19 39 8 11 1 14 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006144   ⟹   ENSRNOP00000006144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,133,418 - 137,182,645 (-)Ensembl
Rnor_6.0 Ensembl6144,069,077 - 144,123,596 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087845   ⟹   ENSRNOP00000072019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)Ensembl
Rnor_6.0 Ensembl6144,069,022 - 144,123,729 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093919   ⟹   ENSRNOP00000080236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099487   ⟹   ENSRNOP00000078104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109958   ⟹   ENSRNOP00000083494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6137,133,418 - 137,188,719 (-)Ensembl
RefSeq Acc Id: NM_001191773   ⟹   NP_001178702
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,441 - 143,331,574 (-)NCBI
mRatBN7.26137,133,418 - 137,188,553 (-)NCBI
Rnor_6.06144,069,077 - 144,123,596 (-)NCBI
Rnor_5.06153,007,323 - 153,063,140 (-)NCBI
Celera6134,799,216 - 134,853,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240688   ⟹   XP_006240750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,331,745 (-)NCBI
mRatBN7.26137,133,418 - 137,188,725 (-)NCBI
Rnor_6.06144,069,077 - 144,123,762 (-)NCBI
Rnor_5.06153,007,323 - 153,063,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594193   ⟹   XP_017449682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,331,745 (-)NCBI
mRatBN7.26137,133,418 - 137,188,725 (-)NCBI
Rnor_6.06144,069,077 - 144,123,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594194   ⟹   XP_017449683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,331,735 (-)NCBI
mRatBN7.26137,133,418 - 137,188,526 (-)NCBI
Rnor_6.06144,069,077 - 144,123,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594195   ⟹   XP_017449684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,331,762 (-)NCBI
mRatBN7.26137,133,418 - 137,188,724 (-)NCBI
Rnor_6.06144,069,077 - 144,123,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594197   ⟹   XP_017449686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,331,524 (-)NCBI
mRatBN7.26137,133,418 - 137,188,519 (-)NCBI
Rnor_6.06144,069,077 - 144,123,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594198   ⟹   XP_017449687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,332,971 (-)NCBI
mRatBN7.26137,133,418 - 137,189,882 (-)NCBI
Rnor_6.06144,069,077 - 144,124,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112428   ⟹   XP_038968356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,332,971 (-)NCBI
mRatBN7.26137,133,418 - 137,189,882 (-)NCBI
RefSeq Acc Id: XM_039112429   ⟹   XP_038968357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,332,971 (-)NCBI
mRatBN7.26137,133,418 - 137,189,882 (-)NCBI
RefSeq Acc Id: XM_039112430   ⟹   XP_038968358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,276,448 - 143,333,006 (-)NCBI
mRatBN7.26137,133,418 - 137,189,937 (-)NCBI
RefSeq Acc Id: XM_063262030   ⟹   XP_063118100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,277,151 - 143,331,745 (-)NCBI
RefSeq Acc Id: XR_001838171
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,286,686 - 143,331,745 (-)NCBI
mRatBN7.26137,143,664 - 137,188,726 (-)NCBI
Rnor_6.06144,078,731 - 144,123,762 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001178702   ⟸   NM_001191773
- UniProtKB: A0A8I5YCM7 (UniProtKB/TrEMBL),   A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240750   ⟸   XM_006240688
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449687   ⟸   XM_017594198
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449684   ⟸   XM_017594195
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZWP7 (UniProtKB/TrEMBL),   A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449682   ⟸   XM_017594193
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449686   ⟸   XM_017594197
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449683   ⟸   XM_017594194
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K1X3 (UniProtKB/TrEMBL),   A0A8I5ZSL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006144   ⟸   ENSRNOT00000006144
RefSeq Acc Id: ENSRNOP00000072019   ⟸   ENSRNOT00000087845
RefSeq Acc Id: XP_038968358   ⟸   XM_039112430
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968357   ⟸   XM_039112429
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZSL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968356   ⟸   XM_039112428
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K1X3 (UniProtKB/TrEMBL),   A0A8I5ZSL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078104   ⟸   ENSRNOT00000099487
RefSeq Acc Id: ENSRNOP00000083494   ⟸   ENSRNOT00000109958
RefSeq Acc Id: ENSRNOP00000080236   ⟸   ENSRNOT00000093919
RefSeq Acc Id: XP_063118100   ⟸   XM_063262030
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1X3-F1-model_v2 AlphaFold A0A0G2K1X3 1-1037 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694908
Promoter ID:EPDNEW_R5431
Type:initiation region
Name:Wdr60_1
Description:WD repeat domain 60
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06144,123,746 - 144,123,806EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306493 AgrOrtholog
BioCyc Gene G2FUF-35514 BioCyc
Ensembl Genes ENSRNOG00000004520 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006144.7 UniProtKB/TrEMBL
  ENSRNOT00000087845.2 UniProtKB/TrEMBL
  ENSRNOT00000093919.1 UniProtKB/TrEMBL
  ENSRNOT00000099487 ENTREZGENE
  ENSRNOT00000099487.1 UniProtKB/TrEMBL
  ENSRNOT00000109958.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR60 UniProtKB/TrEMBL
KEGG Report rno:314523 UniProtKB/TrEMBL
NCBI Gene 314523 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 2 INTERMEDIATE CHAIN 1 UniProtKB/TrEMBL
  PTHR16022 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Dync2i1 PhenoGen
RatGTEx ENSRNOG00000004520 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K1X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWP7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYV1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-22 Dync2i1  dynein 2 intermediate chain 1  Wdr60  WD repeat domain 60  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Wdr60  WD repeat domain 60  RGD1306493_predicted  similar to hypothetical protein FLJ10300 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306493_predicted  similar to hypothetical protein FLJ10300 (predicted)  LOC314523_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314523_predicted  similar to hypothetical protein FLJ10300 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL