Gtpbp2 (GTP binding protein 2) - Rat Genome Database

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Gene: Gtpbp2 (GTP binding protein 2) Rattus norvegicus
Analyze
Symbol: Gtpbp2
Name: GTP binding protein 2
RGD ID: 1306367
Description: Predicted to enable identical protein binding activity and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, no-go decay and rescue of stalled ribosome. Orthologous to human GTPBP2 (GTP binding protein 2); INTERACTS WITH (+)-schisandrin B; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GTP-binding protein 2; LOC363195
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,311,532 - 22,321,405 (-)NCBIGRCr8
mRatBN7.2914,813,964 - 14,823,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,813,964 - 14,823,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,398,503 - 23,406,541 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,461,081 - 28,469,121 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,761,927 - 26,769,965 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,198,957 - 17,208,456 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,198,957 - 17,209,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,095,446 - 16,104,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,377,808 - 10,385,845 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,375,131 - 10,384,425 (-)NCBI
Celera912,561,278 - 12,569,316 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic AMP  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
carbamazepine  (ISO)
celastrol  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
diclofenac  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
gedunin  (ISO)
genistein  (EXP)
gentamycin  (EXP)
hydrogen chloride  (ISO)
hydrogen cyanide  (ISO)
hydroquinone  (ISO)
lucanthone  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-methylformamide  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
trichostatin A  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25061210  


Genomics

Comparative Map Data
Gtpbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,311,532 - 22,321,405 (-)NCBIGRCr8
mRatBN7.2914,813,964 - 14,823,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,813,964 - 14,823,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,398,503 - 23,406,541 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,461,081 - 28,469,121 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,761,927 - 26,769,965 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,198,957 - 17,208,456 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,198,957 - 17,209,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,095,446 - 16,104,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,377,808 - 10,385,845 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,375,131 - 10,384,425 (-)NCBI
Celera912,561,278 - 12,569,316 (-)NCBICelera
Cytogenetic Map9q12NCBI
GTPBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,620,494 - 43,631,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,605,316 - 43,629,264 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,588,231 - 43,597,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,696,196 - 43,704,914 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,696,195 - 43,704,914NCBI
Celera645,139,839 - 45,148,557 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,307,393 - 43,316,111 (-)NCBIHuRef
CHM1_1643,591,281 - 43,599,999 (-)NCBICHM1_1
T2T-CHM13v2.0643,449,227 - 43,460,058 (-)NCBIT2T-CHM13v2.0
Gtpbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,470,153 - 46,480,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,471,958 - 46,480,296 (+)EnsemblGRCm39 Ensembl
GRCm381746,159,227 - 46,169,370 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,161,032 - 46,169,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,297,981 - 46,306,319 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,624,652 - 45,632,949 (+)NCBIMGSCv36mm8
Celera1749,592,493 - 49,600,833 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.89NCBI
Gtpbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,412,934 - 9,424,365 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,414,128 - 9,425,671 (-)NCBIChiLan1.0ChiLan1.0
GTPBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,118,671 - 58,127,443 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,988,453 - 53,997,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,210,517 - 43,219,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,500,581 - 44,509,303 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,500,159 - 44,511,300 (-)Ensemblpanpan1.1panPan2
GTPBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,073,233 - 12,082,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,074,264 - 12,080,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,063,741 - 12,107,420 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,520,899 - 12,564,921 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,557,235 - 12,564,888 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,046,366 - 12,090,006 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,132,509 - 12,177,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,226,883 - 12,270,550 (-)NCBIUU_Cfam_GSD_1.0
Gtpbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,562,610 - 47,572,009 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,389,639 - 16,397,603 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,389,659 - 16,397,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTPBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,603,474 - 38,613,647 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,598,763 - 38,613,217 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,185,990 - 44,197,077 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTPBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,533,531 - 28,544,055 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,535,410 - 28,542,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,673,684 - 43,682,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtpbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,053,822 - 16,060,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,052,001 - 16,060,925 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtpbp2
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:101
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000026195
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 33 23 19 23 1 3 71 32 40 11 1
Low 15 24 18 18 7 8 3 3 1 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000026195   ⟹   ENSRNOP00000026195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,813,966 - 14,822,003 (-)Ensembl
Rnor_6.0 Ensembl917,198,957 - 17,206,994 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083764   ⟹   ENSRNOP00000075017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,813,966 - 14,821,894 (-)Ensembl
Rnor_6.0 Ensembl917,199,385 - 17,209,220 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094924   ⟹   ENSRNOP00000083263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,813,964 - 14,822,003 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104572   ⟹   ENSRNOP00000093692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,813,964 - 14,823,241 (-)Ensembl
RefSeq Acc Id: NM_001013225   ⟹   NP_001013243
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,319,569 (-)NCBI
mRatBN7.2914,813,966 - 14,822,003 (-)NCBI
Rnor_6.0917,198,957 - 17,206,994 (-)NCBI
Rnor_5.0916,095,446 - 16,104,949 (-)NCBI
RGSC_v3.4910,377,808 - 10,385,845 (-)RGD
Celera912,561,278 - 12,569,316 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244543   ⟹   XP_006244605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,321,405 (-)NCBI
mRatBN7.2914,813,964 - 14,823,419 (-)NCBI
Rnor_6.0917,198,957 - 17,208,456 (-)NCBI
Rnor_5.0916,095,446 - 16,104,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244545   ⟹   XP_006244607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,317,235 (-)NCBI
mRatBN7.2914,813,964 - 14,819,691 (-)NCBI
Rnor_6.0917,198,957 - 17,206,693 (-)NCBI
Rnor_5.0916,095,446 - 16,104,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596507   ⟹   XP_017451996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,319,497 (-)NCBI
mRatBN7.2914,813,964 - 14,821,930 (-)NCBI
Rnor_6.0917,198,957 - 17,206,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083823   ⟹   XP_038939751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,319,532 (-)NCBI
mRatBN7.2914,813,964 - 14,821,950 (-)NCBI
RefSeq Acc Id: XM_039083824   ⟹   XP_038939752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,316,599 (-)NCBI
mRatBN7.2914,813,964 - 14,823,419 (-)NCBI
RefSeq Acc Id: XM_063267360   ⟹   XP_063123430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,311,532 - 22,321,405 (-)NCBI
RefSeq Acc Id: XR_005488932
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,313,543 - 22,319,562 (-)NCBI
mRatBN7.2914,815,974 - 14,821,972 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013243   ⟸   NM_001013225
- UniProtKB: D4ABV1 (UniProtKB/TrEMBL),   A6JIT1 (UniProtKB/TrEMBL),   A0A0G2K9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244605   ⟸   XM_006244543
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AJA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244607   ⟸   XM_006244545
- Peptide Label: isoform X3
- UniProtKB: A6JIT2 (UniProtKB/TrEMBL),   A0A0G2K9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451996   ⟸   XM_017596507
- Peptide Label: isoform X3
- UniProtKB: A6JIT2 (UniProtKB/TrEMBL),   A0A0G2K9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026195   ⟸   ENSRNOT00000026195
RefSeq Acc Id: ENSRNOP00000075017   ⟸   ENSRNOT00000083764
RefSeq Acc Id: XP_038939752   ⟸   XM_039083824
- Peptide Label: isoform X4
- UniProtKB: A6JIT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939751   ⟸   XM_039083823
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093692   ⟸   ENSRNOT00000104572
RefSeq Acc Id: ENSRNOP00000083263   ⟸   ENSRNOT00000094924
RefSeq Acc Id: XP_063123430   ⟸   XM_063267360
- Peptide Label: isoform X1
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABV1-F1-model_v2 AlphaFold D4ABV1 1-602 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696533
Promoter ID:EPDNEW_R7056
Type:multiple initiation site
Name:Gtpbp2_1
Description:GTP binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0917,206,979 - 17,207,039EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306367 AgrOrtholog
BioCyc Gene G2FUF-28206 BioCyc
Ensembl Genes ENSRNOG00000019332 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026195 ENTREZGENE
  ENSRNOT00000026195.7 UniProtKB/TrEMBL
  ENSRNOT00000083764.2 UniProtKB/TrEMBL
  ENSRNOT00000094924.1 UniProtKB/TrEMBL
  ENSRNOT00000104572.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EF_GTP-bd_dom UniProtKB/TrEMBL
  GTPBP1-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
KEGG Report rno:363195 UniProtKB/TrEMBL
NCBI Gene 363195 ENTREZGENE
PANTHER ELONGATION FACTOR TU-RELATED UniProtKB/TrEMBL
  GTP-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
PhenoGen Gtpbp2 PhenoGen
PROSITE G_TR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019332 RatGTEx
Superfamily-SCOP Elong_init_C UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  Translat_factor UniProtKB/TrEMBL
UniProt A0A0G2K9J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJA2 ENTREZGENE, UniProtKB/TrEMBL
  A6JIT1 ENTREZGENE, UniProtKB/TrEMBL
  A6JIT2 ENTREZGENE, UniProtKB/TrEMBL
  A6JIT3 ENTREZGENE, UniProtKB/TrEMBL
  D4ABV1 ENTREZGENE, UniProtKB/TrEMBL
  Q5M809_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Gtpbp2  GTP binding protein 2  Gtpbp2_predicted  GTP binding protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gtpbp2_predicted  GTP binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED