Rnd1 (Rho family GTPase 1) - Rat Genome Database

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Gene: Rnd1 (Rho family GTPase 1) Rattus norvegicus
Analyze
Symbol: Rnd1
Name: Rho family GTPase 1
RGD ID: 1306338
Description: Predicted to enable several functions, including GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including actin filament organization; neuron remodeling; and regulation of actin cytoskeleton organization. Predicted to be located in actin cytoskeleton; adherens junction; and intracellular membrane-bounded organelle. Predicted to be active in cytosol and plasma membrane. Orthologous to human RND1 (Rho family GTPase 1); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC109441; rho-related GTP-binding protein Rho6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,700,321 - 131,707,392 (-)NCBIGRCr8
mRatBN7.27129,821,311 - 129,828,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,821,311 - 129,828,399 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,628,549 - 131,635,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,854,095 - 133,861,172 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,766,597 - 133,773,674 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,349,138 - 140,356,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,349,138 - 140,356,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,852,416 - 114,859,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,418,519 - 137,425,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,494,955 - 137,502,027 (-)NCBI
Celera7126,311,539 - 126,318,610 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP)
15-acetyldeoxynivalenol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-aminophenol  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetaldehyde  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (EXP)
Allylamine  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbofuran  (EXP)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chloroform  (EXP)
chloroprene  (EXP,ISO)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP,ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
fenvalerate  (EXP)
fluoranthene  (ISO)
formaldehyde  (ISO)
furan  (ISO)
isoprenaline  (EXP)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
metaproterenol  (EXP)
metformin  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
mitoxantrone  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (EXP)
orciprenaline  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylbutazone  (EXP)
phenylephrine  (EXP)
phenytoin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
resorcinol  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium dodecyl sulfate  (ISO)
tebuconazole  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
topotecan  (EXP)
triamterene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A role of Rnd1 GTPase in dendritic spine formation in hippocampal neurons. Ishikawa Y, etal., J Neurosci 2003 Dec 3;23(35):11065-72.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9531558   PMID:11095956   PMID:14732713   PMID:15738000   PMID:16311049   PMID:16530331   PMID:18996843   PMID:19843518   PMID:24690281   PMID:30797814  


Genomics

Comparative Map Data
Rnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,700,321 - 131,707,392 (-)NCBIGRCr8
mRatBN7.27129,821,311 - 129,828,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,821,311 - 129,828,399 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,628,549 - 131,635,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,854,095 - 133,861,172 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,766,597 - 133,773,674 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,349,138 - 140,356,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,349,138 - 140,356,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,852,416 - 114,859,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,418,519 - 137,425,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,494,955 - 137,502,027 (-)NCBI
Celera7126,311,539 - 126,318,610 (-)NCBICelera
Cytogenetic Map7q36NCBI
RND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,857,145 - 48,865,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,857,145 - 48,865,870 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,250,928 - 49,259,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,537,197 - 47,545,920 (-)NCBINCBI36Build 36hg18NCBI36
Build 341247,537,195 - 47,545,920NCBI
Celera1248,047,029 - 48,055,768 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,283,762 - 46,292,501 (-)NCBIHuRef
CHM1_11249,216,723 - 49,225,496 (-)NCBICHM1_1
T2T-CHM13v2.01248,819,339 - 48,828,069 (-)NCBIT2T-CHM13v2.0
Rnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,567,086 - 98,575,342 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,561,302 - 98,575,342 (-)EnsemblGRCm39 Ensembl
GRCm381598,669,205 - 98,677,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,663,421 - 98,677,461 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,499,636 - 98,507,892 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,497,239 - 98,505,495 (-)NCBIMGSCv36mm8
Celera15100,817,493 - 100,825,752 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.65NCBI
Rnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,704,298 - 7,709,245 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,703,461 - 7,709,363 (-)NCBIChiLan1.0ChiLan1.0
RND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,316,380 - 45,325,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,313,144 - 45,322,025 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,882,076 - 39,890,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,760,706 - 40,769,407 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,760,706 - 40,769,401 (+)Ensemblpanpan1.1panPan2
RND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,679,629 - 5,686,657 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,679,658 - 5,687,428 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,571,242 - 40,578,154 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,730,560 - 5,737,493 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,730,577 - 5,738,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,694,470 - 5,701,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,684,537 - 5,691,454 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,963,520 - 40,970,441 (-)NCBIUU_Cfam_GSD_1.0
Rnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,470,975 - 66,478,988 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,685,840 - 6,693,748 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,685,855 - 6,693,715 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,914,645 - 14,922,038 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,914,652 - 14,922,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,325,808 - 15,333,219 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,097,166 - 45,106,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,097,076 - 45,106,187 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037201,040,582 - 201,049,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,305,677 - 3,313,578 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,305,907 - 3,312,618 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnd1
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:219
Count of miRNA genes:146
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000018276
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
RH141940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27129,821,456 - 129,821,639 (+)MAPPERmRatBN7.2
Rnor_6.07140,349,284 - 140,349,465NCBIRnor6.0
Rnor_5.0X114,852,562 - 114,852,743UniSTSRnor5.0
RGSC_v3.47137,418,665 - 137,418,846UniSTSRGSC3.4
Celera7126,311,685 - 126,311,866UniSTS
RH 3.4 Map71087.3UniSTS
Cytogenetic Map7q36UniSTS
BE119113  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27129,823,020 - 129,823,179 (+)MAPPERmRatBN7.2
Rnor_6.07140,350,847 - 140,351,005NCBIRnor6.0
Rnor_5.0X114,854,125 - 114,854,283UniSTSRnor5.0
RGSC_v3.47137,420,228 - 137,420,386UniSTSRGSC3.4
Celera7126,313,248 - 126,313,406UniSTS
RH 3.4 Map71086.5UniSTS
Cytogenetic Map7q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 56 3 3
Low 3 41 41 27 19 27 8 11 18 35 38 8 8
Below cutoff 16 14 14

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000077856   ⟹   ENSRNOP00000070395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,821,313 - 129,828,398 (-)Ensembl
Rnor_6.0 Ensembl7140,349,138 - 140,356,209 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109910   ⟹   ENSRNOP00000095432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,823,591 - 129,828,399 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113005   ⟹   ENSRNOP00000078280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,821,311 - 129,827,983 (-)Ensembl
RefSeq Acc Id: NM_001013222   ⟹   NP_001013240
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87131,700,321 - 131,707,392 (-)NCBI
mRatBN7.27129,821,311 - 129,828,385 (-)NCBI
Rnor_6.07140,349,138 - 140,356,209 (-)NCBI
Rnor_5.0X114,852,416 - 114,859,487 (-)NCBI
RGSC_v3.47137,418,519 - 137,425,590 (-)RGD
Celera7126,311,539 - 126,318,610 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013240 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89994 (Get FASTA)   NCBI Sequence Viewer  
  EDL87044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070395
  ENSRNOP00000070395.1
  ENSRNOP00000078280.1
  ENSRNOP00000095432.1
Reference Protein Sequences
RefSeq Acc Id: NP_001013240   ⟸   NM_001013222
- UniProtKB: Q5FVG9 (UniProtKB/TrEMBL),   A0A0G2JXT4 (UniProtKB/TrEMBL),   A0A8I5ZL07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070395   ⟸   ENSRNOT00000077856
RefSeq Acc Id: ENSRNOP00000078280   ⟸   ENSRNOT00000113005
RefSeq Acc Id: ENSRNOP00000095432   ⟸   ENSRNOT00000109910

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVG9-F1-model_v2 AlphaFold Q5FVG9 1-232 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695629
Promoter ID:EPDNEW_R6154
Type:single initiation site
Name:Rnd1_1
Description:Rho family GTPase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07140,356,222 - 140,356,282EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306338 AgrOrtholog
BioCyc Gene G2FUF-32122 BioCyc
Ensembl Genes ENSRNOG00000059857 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077856 ENTREZGENE
  ENSRNOT00000077856.2 UniProtKB/TrEMBL
  ENSRNOT00000109910.1 UniProtKB/TrEMBL
  ENSRNOT00000113005.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7320068 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP_bd UniProtKB/TrEMBL
  Small_GTPase_Rho UniProtKB/TrEMBL
KEGG Report rno:362993 UniProtKB/TrEMBL
MGC_CLONE MGC:109441 IMAGE-MGC_LOAD
NCBI Gene 362993 ENTREZGENE
PANTHER PTHR24072 UniProtKB/TrEMBL
  RHO-RELATED GTP-BINDING PROTEIN RHO6 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rnd1 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059857 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JXT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZL07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALF2_RAT UniProtKB/TrEMBL
  Q5FVG9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rnd1  Rho family GTPase 1  Rnd1_predicted  Rho family GTPase 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnd1_predicted  Rho family GTPase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED