Poglut1 (protein O-glucosyltransferase 1) - Rat Genome Database

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Gene: Poglut1 (protein O-glucosyltransferase 1) Rattus norvegicus
Analyze
Symbol: Poglut1
Name: protein O-glucosyltransferase 1
RGD ID: 1306248
Description: Predicted to enable UDP-glucosyltransferase activity and UDP-xylosyltransferase activity. Predicted to be involved in several processes, including positive regulation of Notch signaling pathway; protein O-linked glycosylation via serine; and regulation of gastrulation. Predicted to act upstream of or within several processes, including paraxial mesoderm development; regulation of Notch signaling pathway; and somitogenesis. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in Dowling-Degos disease and autosomal recessive limb-girdle muscular dystrophy type 2Z. Orthologous to human POGLUT1 (protein O-glucosyltransferase 1); INTERACTS WITH bisphenol A; flutamide; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KTEL (Lys-Tyr-Glu-Leu) containing 1; Ktelc1; LOC288091; O-glucosyltransferase Rumi homolog; RGD1306248; similar to RIKEN cDNA 9630046K23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,704,119 - 75,731,964 (+)NCBIGRCr8
mRatBN7.21162,198,600 - 62,226,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,198,513 - 62,226,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,011,118 - 71,038,965 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,673,375 - 63,701,222 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,724,548 - 62,752,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,761,493 - 64,788,210 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,761,146 - 64,788,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,321,441 - 67,348,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,975,846 - 64,004,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,024,831 - 64,060,743 (+)NCBI
Celera1161,701,387 - 61,729,036 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9636176   PMID:12477932   PMID:15755804   PMID:16524674   PMID:21081508   PMID:21490058   PMID:21949356   PMID:23376485   PMID:26496195   PMID:27807076   PMID:30127001  


Genomics

Comparative Map Data
Poglut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,704,119 - 75,731,964 (+)NCBIGRCr8
mRatBN7.21162,198,600 - 62,226,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,198,513 - 62,226,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,011,118 - 71,038,965 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,673,375 - 63,701,222 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,724,548 - 62,752,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,761,493 - 64,788,210 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,761,146 - 64,788,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,321,441 - 67,348,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,975,846 - 64,004,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,024,831 - 64,060,743 (+)NCBI
Celera1161,701,387 - 61,729,036 (+)NCBICelera
Cytogenetic Map11q21NCBI
POGLUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,468,963 - 119,494,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,468,963 - 119,494,708 (+)EnsemblGRCh38hg38GRCh38
GRCh373119,187,810 - 119,213,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,670,489 - 120,696,245 (+)NCBINCBI36Build 36hg18NCBI36
Celera3117,596,459 - 117,622,119 (+)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3116,563,480 - 116,589,262 (+)NCBIHuRef
CHM1_13119,151,272 - 119,177,040 (+)NCBICHM1_1
T2T-CHM13v2.03122,188,674 - 122,214,425 (+)NCBIT2T-CHM13v2.0
Poglut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,345,420 - 38,370,619 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,345,499 - 38,370,620 (-)EnsemblGRCm39 Ensembl
GRCm381638,525,058 - 38,550,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,525,137 - 38,550,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,525,264 - 38,550,266 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,444,483 - 38,469,485 (-)NCBIMGSCv36mm8
Celera1638,935,830 - 38,960,743 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.86NCBI
Poglut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,188,183 - 19,206,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,188,512 - 19,206,050 (+)NCBIChiLan1.0ChiLan1.0
POGLUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,446,032 - 117,472,228 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,450,785 - 117,476,880 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,591,271 - 116,617,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,503,899 - 123,529,919 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,503,899 - 123,529,919 (+)Ensemblpanpan1.1panPan2
POGLUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13323,122,682 - 23,150,863 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,121,563 - 23,148,678 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3323,149,617 - 23,181,326 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,361,351 - 23,389,515 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13323,163,767 - 23,191,770 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03323,195,891 - 23,227,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,768,865 - 23,796,802 (+)NCBIUU_Cfam_GSD_1.0
Poglut1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,092,539 - 131,113,911 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365366,408,060 - 6,429,589 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365366,408,066 - 6,427,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POGLUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,764,216 - 140,793,596 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,763,231 - 140,793,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,078,559 - 150,093,338 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POGLUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,336,120 - 61,363,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,335,515 - 61,363,078 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041104,964,650 - 104,990,808 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Poglut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,682,636 - 28,702,806 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,682,594 - 28,701,841 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Poglut1
181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:836
Count of miRNA genes:293
Interacting mature miRNAs:360
Transcripts:ENSRNOT00000051428
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

Markers in Region
RH143536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,225,341 - 62,225,590 (+)MAPPERmRatBN7.2
Rnor_6.01164,787,106 - 64,787,354NCBIRnor6.0
Rnor_5.01167,322,297 - 67,322,545UniSTSRnor5.0
RGSC_v3.41164,003,666 - 64,003,914UniSTSRGSC3.4
Celera1161,727,934 - 61,728,182UniSTS
RH 3.4 Map11510.1UniSTS
Cytogenetic Map11q21UniSTS
RH141283  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,226,145 - 62,226,364 (+)MAPPERmRatBN7.2
Rnor_6.01164,787,910 - 64,788,128NCBIRnor6.0
Rnor_5.01167,321,523 - 67,321,741UniSTSRnor5.0
RGSC_v3.41164,004,471 - 64,004,689UniSTSRGSC3.4
Celera1161,728,736 - 61,728,954UniSTS
RH 3.4 Map11508.3UniSTS
Cytogenetic Map11q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 21 13 19 13 74 28 33 11
Low 1 19 36 28 28 8 11 7 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000051428   ⟹   ENSRNOP00000042736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1162,198,513 - 62,226,434 (+)Ensembl
Rnor_6.0 Ensembl1164,761,146 - 64,788,208 (+)Ensembl
RefSeq Acc Id: NM_001100652   ⟹   NP_001094122
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,704,119 - 75,731,964 (+)NCBI
mRatBN7.21162,198,600 - 62,226,446 (+)NCBI
Rnor_6.01164,761,493 - 64,788,210 (+)NCBI
Rnor_5.01167,321,441 - 67,348,158 (-)NCBI
RGSC_v3.41163,975,846 - 64,004,771 (+)RGD
Celera1161,701,387 - 61,729,036 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001094122 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91408 (Get FASTA)   NCBI Sequence Viewer  
  EDM11213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042736
  ENSRNOP00000042736.3
GenBank Protein G3V9D0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001094122   ⟸   NM_001100652
- Peptide Label: precursor
- UniProtKB: G3V9D0 (UniProtKB/Swiss-Prot),   Q5BJN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042736   ⟸   ENSRNOT00000051428
Protein Domains
Glycosyl transferase CAP10

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9D0-F1-model_v2 AlphaFold G3V9D0 1-392 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306248 AgrOrtholog
BioCyc Gene G2FUF-21281 BioCyc
Ensembl Genes ENSRNOG00000003014 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051428 ENTREZGENE
  ENSRNOT00000051428.5 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7325297 IMAGE-MGC_LOAD
InterPro CAP10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:288091 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109550 IMAGE-MGC_LOAD
NCBI Gene 288091 ENTREZGENE
PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN O-GLUCOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Poglut1 PhenoGen
RatGTEx ENSRNOG00000003014 RatGTEx
SMART CAP10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAF7_RAT UniProtKB/TrEMBL
  G3V9D0 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5BJN4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Poglut1  protein O-glucosyltransferase 1  Ktelc1  KTEL (Lys-Tyr-Glu-Leu) containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ktelc1  KTEL (Lys-Tyr-Glu-Leu) containing 1  RGD1306248  similar to RIKEN cDNA 9630046K23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306248  similar to RIKEN cDNA 9630046K23  RGD1306248_predicted  similar to RIKEN cDNA 9630046K23 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306248_predicted  similar to RIKEN cDNA 9630046K23 (predicted)  LOC288091_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288091_predicted  similar to RIKEN cDNA 9630046K23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL