Annotation (Toggle Detail/Summary View) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | chaperone-mediated protein transport | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | chaperone-mediated protein transport | | ISO | RGD:1603664 | 1624291 | PMID:20052288 | RGD | PMID:20052288 | fat cell differentiation | | ISS | UniProtKB:B9EHT4 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | membrane biogenesis | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | membrane biogenesis | | ISO | RGD:1603664 | 1624291 | PMID:11854307 | RGD | PMID:11854307 | negative regulation of microtubule polymerization | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | negative regulation of microtubule polymerization | | ISO | RGD:1603664 | 1624291 | PMID:15262990 | RGD | PMID:15262990 | peptidyl-L-cysteine S-palmitoylation | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | peptidyl-L-cysteine S-palmitoylation | | ISO | RGD:1603664 | 1624291 | PMID:15262990 | RGD | PMID:15262990 | positive regulation of apoptotic process | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | positive regulation of apoptotic process | | ISO | RGD:1603664 | 1624291 | PMID:20052288 | RGD | PMID:20052288 | positive regulation of endocytosis | | ISS | UniProtKB:Q96DZ5 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | positive regulation of endocytosis | | ISO | RGD:1603664 | 1624291 | PMID:11854307 | RGD | PMID:11854307 | positive regulation of establishment of protein localization to plasma membrane | | ISO | RGD:1331911 | 1624291 | MGI:MGI:3836212|PMID:19139280 | RGD | MGI:MGI:3836212 PMID:19139280 | positive regulation of establishment of protein localization to plasma membrane | | ISS | UniProtKB:B9EHT4 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | positive regulation of glucose transport | | ISO | RGD:1331911 | 1624291 | MGI:MGI:3836212|PMID:19139280 | RGD | MGI:MGI:3836212 PMID:19139280 | positive regulation of glucose transport | | ISS | UniProtKB:B9EHT4 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | positive regulation of protein phosphorylation | | ISO | RGD:1331911 | 1624291 | MGI:MGI:3836212|PMID:19139280 | RGD | MGI:MGI:3836212 PMID:19139280 | positive regulation of protein phosphorylation | | ISS | UniProtKB:B9EHT4 | 1600115 | GO_REF:0000024 | UniProtKB | GO_REF:0000024 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology Annotations
|
|
|
|
References - curated
RGD Disease Portals| Clip3 has been annotated in the following RGD Disease Portals. |
|||
![]() |
| ||
![]() |
| ||
![]() |
| ||
![]() |
| ||
Comparative Map Data| Clip3 (Rattus norvegicus) |
|
|||||||||||||||||||||||||||||||||||
| CLIP3 (Homo sapiens) |
|
|||||||||||||||||||||||||||||||||||
| Clip3 (Mus musculus) |
|
Position Markers| AI844915 |
|
|||||||||||||||||||||||||||||||||||
| AI044262 |
|
QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_001107501 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR06004393 | (Get FASTA) | Search GEO for Microarray Profiles |
| AAHX01004537 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01004538 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH473979 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_001107501 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_001100971 | ||||||||||||||||||||
| Position: |
|
Protein Sequences| Protein RefSeqs | NP_001100971 | (Get FASTA) |
| GenBank Protein | EDM07773 | (Get FASTA) |
Strain Sequence Variants
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000020821 | UniProtKB/TrEMBL |
| ENSRNOG00000050104 | UniProtKB/TrEMBL | |
| Ensembl Protein | ENSRNOP00000028247 | UniProtKB/TrEMBL |
| ENSRNOP00000064329 | UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000028247 | UniProtKB/TrEMBL |
| ENSRNOT00000072819 | UniProtKB/TrEMBL | |
| Entrez Gene | 308493 | ENTREZGENE |
| Gene3D-CATH | ANK | UniProtKB/TrEMBL |
| CAP-Gly_domain | UniProtKB/TrEMBL | |
| HomoloGene Group ID | 9176 | ENTREZGENE |
| InterPro | Ankyrin_rpt | UniProtKB/TrEMBL |
| Ankyrin_rpt-contain_dom | UniProtKB/TrEMBL | |
| Cytoskel-assoc-prot_CAP-Gly | UniProtKB/TrEMBL | |
| IPI | IPI00367085 | UniProtKB/TrEMBL |
| KEGG Report | rno:100911911 | UniProtKB/TrEMBL |
| rno:308493 | ENTREZGENE, UniProtKB/TrEMBL | |
| Pfam | Ank_2 | UniProtKB/TrEMBL |
| CAP_GLY | UniProtKB/TrEMBL | |
| PROSITE | ANK_REP_REGION | UniProtKB/TrEMBL |
| ANK_REPEAT | UniProtKB/TrEMBL | |
| CAP_GLY_1 | UniProtKB/TrEMBL | |
| CAP_GLY_2 | UniProtKB/TrEMBL | |
| SMART | ANK | UniProtKB/TrEMBL |
| CAP_GLY | UniProtKB/TrEMBL | |
| Superfamily-SCOP | ANK | UniProtKB/TrEMBL |
| CAP-Gly_domain | UniProtKB/TrEMBL | |
| UniGene | Rn.136605 | ENTREZGENE |
| UniProt | D4A507_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-03-07 | Clip3 | CAP-GLY domain containing linker protein 3 | RGD1306245_predicted | similar to CLIP-170-related protein (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2005-01-20 | RGD1306245_predicted | similar to CLIP-170-related protein (predicted) | LOC308493_predicted | Symbol and Name status set to approved | 12407 | APPROVED | |
| 2005-01-12 | LOC308493_predicted | similar to CLIP-170-related protein (predicted) | Symbol and Name status set to provisional | 1724 | PROVISIONAL |
| More on Clip3 | |
![]() |
Entrez Gene |
![]() |
Ensembl Gene |
![]() | Genome Browser |
![]() |
NCBI Map Viewer |
![]() |
Vista |
![]() |
Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 1306245 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-04-16 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




