Kif21b (kinesin family member 21B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kif21b (kinesin family member 21B) Rattus norvegicus
Analyze
Symbol: Kif21b
Name: kinesin family member 21B
RGD ID: 1306206
Description: Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to act upstream of or within corpus callosum development. Predicted to be located in cytoplasmic vesicle; dendrite; and growth cone. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Orthologous to human KIF21B (kinesin family member 21B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kinesin-like protein KIF21B; LOC289397; MGC189181
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81350,127,842 - 50,177,822 (+)NCBIGRCr8
mRatBN7.21347,576,129 - 47,626,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,576,160 - 47,626,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1350,184,219 - 50,230,403 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,472,315 - 51,518,499 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,739,948 - 48,786,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,976,505 - 53,026,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,976,507 - 53,023,103 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01358,030,695 - 58,080,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,162,330 - 49,202,704 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11349,171,886 - 49,216,231 (+)NCBI
Celera1347,889,588 - 47,934,922 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14595441   PMID:17511870   PMID:27817978  


Genomics

Comparative Map Data
Kif21b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81350,127,842 - 50,177,822 (+)NCBIGRCr8
mRatBN7.21347,576,129 - 47,626,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,576,160 - 47,626,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1350,184,219 - 50,230,403 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,472,315 - 51,518,499 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,739,948 - 48,786,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,976,505 - 53,026,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,976,507 - 53,023,103 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01358,030,695 - 58,080,585 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,162,330 - 49,202,704 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11349,171,886 - 49,216,231 (+)NCBI
Celera1347,889,588 - 47,934,922 (+)NCBICelera
Cytogenetic Map13q13NCBI
KIF21B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381200,969,390 - 201,023,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1200,969,390 - 201,023,714 (-)EnsemblGRCh38hg38GRCh38
GRCh371200,938,518 - 200,992,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,205,143 - 199,259,451 (-)NCBINCBI36Build 36hg18NCBI36
Celera1174,062,559 - 174,116,875 (-)NCBICelera
Cytogenetic Map1q32.1ENTREZGENE
HuRef1172,105,326 - 172,159,811 (-)NCBIHuRef
CHM1_11202,361,180 - 202,415,474 (-)NCBICHM1_1
T2T-CHM13v2.01200,226,336 - 200,280,656 (-)NCBIT2T-CHM13v2.0
Kif21b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391136,059,128 - 136,105,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1136,059,127 - 136,105,736 (+)EnsemblGRCm39 Ensembl
GRCm381136,131,390 - 136,178,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,131,389 - 136,177,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371138,027,978 - 138,074,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,947,812 - 137,994,425 (+)NCBIMGSCv36mm8
Celera1138,766,523 - 138,813,206 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.61NCBI
Kif21b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,139,168 - 37,187,543 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,139,168 - 37,187,543 (-)NCBIChiLan1.0ChiLan1.0
KIF21B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2148,356,998 - 48,411,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1148,320,617 - 48,374,768 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01176,569,305 - 176,623,403 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11180,872,306 - 180,925,725 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1180,872,306 - 180,925,725 (-)Ensemblpanpan1.1panPan2
KIF21B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.172,185,040 - 2,231,046 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl72,184,733 - 2,231,058 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,869,435 - 1,915,454 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,831,724 - 1,877,748 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,831,431 - 1,877,751 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,815,013 - 1,861,021 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,917,719 - 1,960,987 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,947,492 - 1,993,529 (+)NCBIUU_Cfam_GSD_1.0
Kif21b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934474,111,603 - 74,159,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,346,217 - 3,395,258 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,346,655 - 3,394,656 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF21B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,445,000 - 23,491,181 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,444,997 - 23,491,081 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21027,882,023 - 27,921,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF21B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12528,379,019 - 28,434,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2528,379,014 - 28,434,170 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605529,178,534 - 29,233,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif21b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,633,281 - 9,677,260 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,633,009 - 9,681,228 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kif21b
229 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:88
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000011324
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat

Markers in Region
AU047830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21347,598,224 - 47,598,446 (+)MAPPERmRatBN7.2
Rnor_6.01352,998,587 - 52,998,806NCBIRnor6.0
Rnor_5.01358,052,789 - 58,053,008UniSTSRnor5.0
RGSC_v3.41349,170,730 - 49,170,949UniSTSRGSC3.4
Celera1347,911,632 - 47,911,851UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 15 2 19 2 69 8
Low 1 36 39 36 36 2 3 5 32 33 11 2
Below cutoff 7 3 3 3 6 8 3 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011324   ⟹   ENSRNOP00000011324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,576,160 - 47,622,317 (+)Ensembl
Rnor_6.0 Ensembl1352,976,522 - 53,022,955 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090599   ⟹   ENSRNOP00000074306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,576,211 - 47,626,110 (+)Ensembl
Rnor_6.0 Ensembl1352,976,507 - 53,023,103 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098466   ⟹   ENSRNOP00000082225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,589,221 - 47,626,110 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105337   ⟹   ENSRNOP00000094546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,576,160 - 47,626,127 (+)Ensembl
RefSeq Acc Id: NM_001415800   ⟹   NP_001402729
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,842 - 50,177,822 (+)NCBI
mRatBN7.21347,576,129 - 47,626,112 (+)NCBI
RefSeq Acc Id: XM_006249854   ⟹   XP_006249916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,173,550 (+)NCBI
mRatBN7.21347,576,142 - 47,626,112 (+)NCBI
Rnor_6.01352,976,505 - 53,026,750 (+)NCBI
Rnor_5.01358,030,695 - 58,080,585 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249856   ⟹   XP_006249918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,177,822 (+)NCBI
mRatBN7.21347,576,142 - 47,626,112 (+)NCBI
Rnor_6.01352,976,505 - 53,026,750 (+)NCBI
Rnor_5.01358,030,695 - 58,080,585 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249857   ⟹   XP_006249919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,177,822 (+)NCBI
mRatBN7.21347,576,142 - 47,626,112 (+)NCBI
Rnor_6.01352,976,505 - 53,026,750 (+)NCBI
Rnor_5.01358,030,695 - 58,080,585 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090608   ⟹   XP_038946536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,168,750 (+)NCBI
mRatBN7.21347,576,142 - 47,617,038 (+)NCBI
RefSeq Acc Id: XM_063272196   ⟹   XP_063128266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,173,550 (+)NCBI
RefSeq Acc Id: XM_063272197   ⟹   XP_063128267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,173,550 (+)NCBI
RefSeq Acc Id: XM_063272198   ⟹   XP_063128268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81350,127,847 - 50,173,550 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006249918   ⟸   XM_006249856
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7Q9 (UniProtKB/TrEMBL),   A0A8I6G960 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249916   ⟸   XM_006249854
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249919   ⟸   XM_006249857
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AJU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074306   ⟸   ENSRNOT00000090599
RefSeq Acc Id: ENSRNOP00000011324   ⟸   ENSRNOT00000011324
RefSeq Acc Id: XP_038946536   ⟸   XM_039090608
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AJU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082225   ⟸   ENSRNOT00000098466
RefSeq Acc Id: ENSRNOP00000094546   ⟸   ENSRNOT00000105337
RefSeq Acc Id: NP_001402729   ⟸   NM_001415800
RefSeq Acc Id: XP_063128266   ⟸   XM_063272196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128267   ⟸   XM_063272197
- Peptide Label: isoform X2
- UniProtKB: F1M5N7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063128268   ⟸   XM_063272198
- Peptide Label: isoform X4
Protein Domains
Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M5N7-F1-model_v2 AlphaFold F1M5N7 1-1634 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698858
Promoter ID:EPDNEW_R9378
Type:initiation region
Name:Kif21b_1
Description:kinesin family member 21B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01352,976,491 - 52,976,551EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306206 AgrOrtholog
BioCyc Gene G2FUF-18183 BioCyc
Ensembl Genes ENSRNOG00000008471 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055020605 UniProtKB/Swiss-Prot
  ENSRNOG00060016631 UniProtKB/Swiss-Prot
  ENSRNOG00065021905 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011324.8 UniProtKB/Swiss-Prot
  ENSRNOT00000090599.2 UniProtKB/TrEMBL
  ENSRNOT00000098466.1 UniProtKB/TrEMBL
  ENSRNOT00000105337 ENTREZGENE
  ENSRNOT00000105337.1 UniProtKB/TrEMBL
  ENSRNOT00055035285 UniProtKB/Swiss-Prot
  ENSRNOT00060028743 UniProtKB/Swiss-Prot
  ENSRNOT00065037519 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289397 UniProtKB/Swiss-Prot
NCBI Gene 289397 ENTREZGENE
PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN-LIKE PROTEIN KIF21B ISOFORM X1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kif21b PhenoGen
PRINTS KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008471 RatGTEx
  ENSRNOG00055020605 RatGTEx
  ENSRNOG00060016631 RatGTEx
  ENSRNOG00065021905 RatGTEx
SMART KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K7Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G960 ENTREZGENE, UniProtKB/TrEMBL
  F1M5N7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Kif21b  kinesin family member 21B   Kif21b_predicted  kinesin family member 21B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kif21b_predicted  kinesin family member 21B (predicted)      Symbol and Name status set to approved 70820 APPROVED