Lmo4 (LIM domain only 4) - Rat Genome Database

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Gene: Lmo4 (LIM domain only 4) Rattus norvegicus
Analyze
Symbol: Lmo4
Name: LIM domain only 4
RGD ID: 1305670
Description: Predicted to enable DNA-binding transcription factor binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; neuron differentiation; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; neural tube closure; and thymus development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human LMO4 (LIM domain only 4); PARTICIPATES IN interleukin-6 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LIM domain transcription factor LMO4; LOC362051; MGC105593
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82235,924,574 - 235,941,609 (-)NCBIGRCr8
mRatBN7.22233,264,180 - 233,280,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2241,048,779 - 241,065,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02238,943,176 - 238,959,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02233,806,381 - 233,823,133 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02250,218,635 - 250,235,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,218,641 - 250,241,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02268,752,222 - 268,769,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42242,498,074 - 242,515,160 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12242,484,813 - 242,501,899 (+)NCBI
Celera2225,256,943 - 225,273,636 (-)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
ciguatoxin CTX1B  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
leflunomide  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
phorone  (EXP)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
SB 431542  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XL147  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9860983   PMID:12477932   PMID:14966285   PMID:15691703   PMID:16949565   PMID:17524392   PMID:17991461   PMID:19323994   PMID:19666821   PMID:20549734   PMID:25501662   PMID:25882817  


Genomics

Comparative Map Data
Lmo4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82235,924,574 - 235,941,609 (-)NCBIGRCr8
mRatBN7.22233,264,180 - 233,280,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2241,048,779 - 241,065,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02238,943,176 - 238,959,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02233,806,381 - 233,823,133 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02250,218,635 - 250,235,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,218,641 - 250,241,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02268,752,222 - 268,769,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42242,498,074 - 242,515,160 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12242,484,813 - 242,501,899 (+)NCBI
Celera2225,256,943 - 225,273,636 (-)NCBICelera
Cytogenetic Map2q44NCBI
LMO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38187,328,880 - 87,348,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl187,328,880 - 87,348,923 (+)EnsemblGRCh38hg38GRCh38
GRCh37187,794,563 - 87,814,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36187,566,739 - 87,583,851 (+)NCBINCBI36Build 36hg18NCBI36
Build 34187,506,171 - 87,523,283NCBI
Celera186,039,830 - 86,060,286 (+)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef185,907,757 - 85,928,201 (+)NCBIHuRef
CHM1_1187,909,001 - 87,929,485 (+)NCBICHM1_1
T2T-CHM13v2.0187,171,579 - 87,191,625 (+)NCBIT2T-CHM13v2.0
Lmo4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393143,894,291 - 143,911,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3143,894,291 - 143,910,981 (-)EnsemblGRCm39 Ensembl
GRCm383144,188,530 - 144,205,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3144,188,530 - 144,205,220 (-)EnsemblGRCm38mm10GRCm38
MGSCv373143,851,494 - 143,868,219 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363144,125,916 - 144,142,357 (-)NCBIMGSCv36mm8
Celera3150,625,911 - 150,643,008 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map368.61NCBI
Lmo4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554236,849,555 - 6,866,137 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554236,849,542 - 6,865,928 (-)NCBIChiLan1.0ChiLan1.0
LMO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21139,625,326 - 139,642,026 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,780,899 - 138,797,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01119,848,323 - 119,867,007 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1188,698,962 - 88,718,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl188,698,962 - 88,718,760 (+)Ensemblpanpan1.1panPan2
LMO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1660,892,478 - 60,909,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl660,727,270 - 60,941,058 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha663,606,359 - 63,623,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0661,432,227 - 61,449,629 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl661,430,188 - 61,446,484 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1660,967,016 - 60,984,353 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0660,923,303 - 60,940,624 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0661,421,332 - 61,438,711 (-)NCBIUU_Cfam_GSD_1.0
Lmo4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505897,881,311 - 97,900,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367321,541,515 - 1,555,735 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367321,541,511 - 1,557,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14128,894,113 - 128,910,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24141,341,687 - 141,354,291 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12046,105,755 - 46,126,291 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2046,105,699 - 46,126,399 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603371,708,190 - 71,726,923 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474210,207,899 - 10,225,209 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474210,207,901 - 10,224,807 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lmo4
53 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:61
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000067502
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 33 19 13 19 3 74 31 34 11
Low 8 24 22 6 22 8 8 4 7 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000067502   ⟹   ENSRNOP00000062436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)Ensembl
Rnor_6.0 Ensembl2250,218,670 - 250,241,673 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077221   ⟹   ENSRNOP00000074440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,218,641 - 250,241,590 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082132   ⟹   ENSRNOP00000074824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,222,864 - 250,232,295 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088618   ⟹   ENSRNOP00000075489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,218,670 - 250,235,435 (-)Ensembl
RefSeq Acc Id: NM_001009708   ⟹   NP_001009708
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,924,574 - 235,941,275 (-)NCBI
mRatBN7.22233,264,180 - 233,280,881 (-)NCBI
Rnor_6.02250,218,635 - 250,235,435 (-)NCBI
Rnor_5.02268,752,222 - 268,769,170 (-)NCBI
RGSC_v3.42242,498,074 - 242,515,160 (+)RGD
Celera2225,256,943 - 225,273,636 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233438   ⟹   XP_006233500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,924,581 - 235,938,485 (-)NCBI
mRatBN7.22233,264,180 - 233,278,095 (-)NCBI
Rnor_6.02250,218,635 - 250,232,616 (-)NCBI
Rnor_5.02268,752,222 - 268,769,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063282227   ⟹   XP_063138297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,929,713 - 235,941,609 (-)NCBI
RefSeq Acc Id: XM_063282228   ⟹   XP_063138298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,929,713 - 235,938,487 (-)NCBI
RefSeq Acc Id: NP_001009708   ⟸   NM_001009708
- UniProtKB: Q5PPG8 (UniProtKB/TrEMBL),   F7EU01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233500   ⟸   XM_006233438
- Peptide Label: isoform X2
- UniProtKB: Q5PPG8 (UniProtKB/TrEMBL),   F7EU01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074440   ⟸   ENSRNOT00000077221
RefSeq Acc Id: ENSRNOP00000062436   ⟸   ENSRNOT00000067502
RefSeq Acc Id: ENSRNOP00000074824   ⟸   ENSRNOT00000082132
RefSeq Acc Id: ENSRNOP00000075489   ⟸   ENSRNOT00000088618
RefSeq Acc Id: XP_063138297   ⟸   XM_063282227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138298   ⟸   XM_063282228
- Peptide Label: isoform X1
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K919-F1-model_v2 AlphaFold A0A0G2K919 1-165 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691798
Promoter ID:EPDNEW_R2322
Type:multiple initiation site
Name:Lmo4_2
Description:LIM domain only 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2323  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02250,235,438 - 250,235,498EPDNEW
RGD ID:13691818
Promoter ID:EPDNEW_R2323
Type:multiple initiation site
Name:Lmo4_1
Description:LIM domain only 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2322  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02250,241,676 - 250,241,736EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305670 AgrOrtholog
BioCyc Gene G2FUF-50954 BioCyc
Ensembl Genes ENSRNOG00000009205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067502 ENTREZGENE
  ENSRNOT00000067502.3 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314152 IMAGE-MGC_LOAD
InterPro Znf_LIM UniProtKB/TrEMBL
KEGG Report rno:362051 UniProtKB/TrEMBL
MGC_CLONE MGC:105593 IMAGE-MGC_LOAD
NCBI Gene 362051 ENTREZGENE
PANTHER LD11652P UniProtKB/TrEMBL
  LIM DOMAIN TRANSCRIPTION FACTOR LMO4 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PhenoGen Lmo4 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009205 RatGTEx
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A6HW89_RAT UniProtKB/TrEMBL
  F7EU01 ENTREZGENE, UniProtKB/TrEMBL
  Q5PPG8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Lmo4  LIM domain only 4  Lmo4_predicted  LIM domain only 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lmo4_predicted  LIM domain only 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED