Exoc1 (exocyst complex component 1) - Rat Genome Database

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Gene: Exoc1 (exocyst complex component 1) Rattus norvegicus
Analyze
Symbol: Exoc1
Name: exocyst complex component 1
RGD ID: 1304939
Description: Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within embryo implantation. Predicted to be located in cytoplasm. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Orthologous to human EXOC1 (exocyst complex component 1); PARTICIPATES IN insulin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305287; SEC3-like 1; SEC3-like 1 (S. cerevisiae); Sec3l1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,965,782 - 32,014,156 (-)NCBIGRCr8
mRatBN7.21431,611,536 - 31,659,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,987,967 - 32,036,989 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,295,857 - 33,344,876 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,780,978 - 31,829,997 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,132,210 - 34,192,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,132,221 - 34,177,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,923,763 - 33,958,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,895,938 - 33,933,231 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,895,939 - 33,933,231 (-)NCBI
Celera1430,939,904 - 30,973,166 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
exocyst  (IBA)
plasma membrane  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888  


Genomics

Comparative Map Data
Exoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,965,782 - 32,014,156 (-)NCBIGRCr8
mRatBN7.21431,611,536 - 31,659,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,987,967 - 32,036,989 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,295,857 - 33,344,876 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,780,978 - 31,829,997 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,132,210 - 34,192,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,132,221 - 34,177,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,923,763 - 33,958,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,895,938 - 33,933,231 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,895,939 - 33,933,231 (-)NCBI
Celera1430,939,904 - 30,973,166 (-)NCBICelera
Cytogenetic Map14p11NCBI
EXOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,853,648 - 55,905,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,853,648 - 55,905,086 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,719,814 - 56,771,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36456,414,573 - 56,466,001 (+)NCBINCBI36Build 36hg18NCBI36
Celera454,226,215 - 54,277,630 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef452,673,696 - 52,725,109 (+)NCBIHuRef
CHM1_1456,754,973 - 56,806,432 (+)NCBICHM1_1
T2T-CHM13v2.0459,341,793 - 59,393,237 (+)NCBIT2T-CHM13v2.0
Exoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,677,147 - 76,718,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,677,158 - 76,718,141 (+)EnsemblGRCm39 Ensembl
GRCm38576,529,307 - 76,570,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,529,311 - 76,570,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37576,958,348 - 76,999,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,604,086 - 77,645,073 (+)NCBIMGSCv36mm8
MGSCv36576,046,327 - 76,087,316 (+)NCBIMGSCv36mm8
Celera573,797,301 - 73,843,735 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.28NCBI
Exoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544715,048,959 - 15,100,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544715,049,087 - 15,100,628 (-)NCBIChiLan1.0ChiLan1.0
EXOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2373,880,401 - 73,932,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1474,085,893 - 74,137,485 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0468,024,177 - 68,075,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1474,591,574 - 74,642,955 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl474,591,574 - 74,642,955 (-)Ensemblpanpan1.1panPan2
EXOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,109,773 - 48,177,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,109,810 - 48,176,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,001,315 - 48,068,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01348,723,688 - 48,790,993 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1348,723,718 - 48,790,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11348,397,897 - 48,465,133 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01347,925,412 - 47,992,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01348,872,399 - 48,937,323 (+)NCBIUU_Cfam_GSD_1.0
Exoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,098,753 - 28,149,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648218,148,674 - 18,199,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648218,148,672 - 18,199,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,189,360 - 55,246,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,189,366 - 55,246,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,314,884 - 58,371,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,705,657 - 12,757,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl712,705,305 - 12,757,989 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606613,377,449 - 13,429,831 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476113,494,483 - 13,556,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476113,496,443 - 13,556,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Exoc1
244 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:18
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000059814
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat

Markers in Region
RH133458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,631,016 - 31,631,200 (+)MAPPERmRatBN7.2
Rnor_6.01434,151,684 - 34,151,867NCBIRnor6.0
Rnor_5.01433,930,641 - 33,930,824UniSTSRnor5.0
RGSC_v3.41433,902,816 - 33,902,999UniSTSRGSC3.4
Celera1430,946,782 - 30,946,965UniSTS
RH 3.4 Map14382.88UniSTS
Cytogenetic Map14p11UniSTS
BF399306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,639,634 - 31,639,807 (+)MAPPERmRatBN7.2
Rnor_6.01434,160,271 - 34,160,443NCBIRnor6.0
Rnor_5.01433,939,228 - 33,939,400UniSTSRnor5.0
RGSC_v3.41433,911,434 - 33,911,606UniSTSRGSC3.4
Celera1430,954,989 - 30,955,161UniSTS
RH 3.4 Map14382.18UniSTS
Cytogenetic Map14p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 47 31 19 31 5 7 74 35 41 11 5
Low 12 10 10 10 3 4 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC097392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059814   ⟹   ENSRNOP00000056561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,624,141 - 31,655,557 (-)Ensembl
Rnor_6.0 Ensembl1434,144,895 - 34,177,455 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090470   ⟹   ENSRNOP00000072393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)Ensembl
Rnor_6.0 Ensembl1434,132,221 - 34,172,893 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091230   ⟹   ENSRNOP00000070781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,624,141 - 31,659,876 (-)Ensembl
Rnor_6.0 Ensembl1434,144,808 - 34,177,515 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106895   ⟹   ENSRNOP00000078584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,892 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116085   ⟹   ENSRNOP00000087358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,892 (-)Ensembl
RefSeq Acc Id: NM_001024770   ⟹   NP_001019941
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,978,376 - 32,014,127 (-)NCBI
mRatBN7.21431,624,139 - 31,659,892 (-)NCBI
Rnor_6.01434,144,806 - 34,180,573 (-)NCBI
Rnor_5.01433,923,763 - 33,958,422 (-)NCBI
RGSC_v3.41433,895,938 - 33,933,231 (-)RGD
Celera1430,939,904 - 30,973,166 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401331   ⟹   NP_001388260
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,127 (-)NCBI
mRatBN7.21431,611,545 - 31,659,892 (-)NCBI
RefSeq Acc Id: NM_001401332   ⟹   NP_001388261
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,127 (-)NCBI
mRatBN7.21431,611,545 - 31,659,892 (-)NCBI
RefSeq Acc Id: NM_001401333   ⟹   NP_001388262
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,127 (-)NCBI
mRatBN7.21431,611,545 - 31,659,892 (-)NCBI
RefSeq Acc Id: NM_001401334   ⟹   NP_001388263
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,127 (-)NCBI
mRatBN7.21431,611,545 - 31,659,892 (-)NCBI
RefSeq Acc Id: NM_001401335   ⟹   NP_001388264
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,127 (-)NCBI
mRatBN7.21431,611,545 - 31,659,892 (-)NCBI
RefSeq Acc Id: XM_039091877   ⟹   XP_038947805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,156 (-)NCBI
mRatBN7.21431,611,536 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091878   ⟹   XP_038947806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,143 (-)NCBI
mRatBN7.21431,611,536 - 31,659,740 (-)NCBI
RefSeq Acc Id: XM_039091880   ⟹   XP_038947808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,156 (-)NCBI
mRatBN7.21431,611,536 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091886   ⟹   XP_038947814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,978,376 - 32,014,156 (-)NCBI
mRatBN7.21431,623,541 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_063273075   ⟹   XP_063129145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,142 (-)NCBI
RefSeq Acc Id: XM_063273076   ⟹   XP_063129146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,156 (-)NCBI
RefSeq Acc Id: XM_063273077   ⟹   XP_063129147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,141 (-)NCBI
RefSeq Acc Id: XM_063273078   ⟹   XP_063129148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,965,782 - 32,014,140 (-)NCBI
RefSeq Acc Id: XM_063273079   ⟹   XP_063129149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,978,376 - 32,014,156 (-)NCBI
RefSeq Acc Id: XM_063273080   ⟹   XP_063129150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,978,376 - 32,014,156 (-)NCBI
RefSeq Acc Id: XM_063273081   ⟹   XP_063129151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,978,376 - 32,014,145 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001019941   ⟸   NM_001024770
- Peptide Label: isoform 6
- UniProtKB: A0A0G2JYT4 (UniProtKB/TrEMBL),   Q4V8H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056561   ⟸   ENSRNOT00000059814
RefSeq Acc Id: ENSRNOP00000072393   ⟸   ENSRNOT00000090470
RefSeq Acc Id: ENSRNOP00000070781   ⟸   ENSRNOT00000091230
RefSeq Acc Id: XP_038947808   ⟸   XM_039091880
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947805   ⟸   XM_039091877
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947806   ⟸   XM_039091878
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947814   ⟸   XM_039091886
- Peptide Label: isoform X7
- UniProtKB: Q4V8H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078584   ⟸   ENSRNOT00000106895
RefSeq Acc Id: ENSRNOP00000087358   ⟸   ENSRNOT00000116085
RefSeq Acc Id: NP_001388261   ⟸   NM_001401332
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388260   ⟸   NM_001401331
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388263   ⟸   NM_001401334
- Peptide Label: isoform 4
- UniProtKB: A0A8I5ZLJ5 (UniProtKB/TrEMBL),   A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388262   ⟸   NM_001401333
- Peptide Label: isoform 3
- UniProtKB: A0A0G2K2V5 (UniProtKB/TrEMBL),   A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388264   ⟸   NM_001401335
- Peptide Label: isoform 5
- UniProtKB: A0A8I6A8D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129146   ⟸   XM_063273076
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063129145   ⟸   XM_063273075
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129147   ⟸   XM_063273077
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129148   ⟸   XM_063273078
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063129150   ⟸   XM_063273080
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063129149   ⟸   XM_063273079
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129151   ⟸   XM_063273081
- Peptide Label: isoform X10
Protein Domains
Exocyst complex component Sec3 PIP2-binding N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2V5-F1-model_v2 AlphaFold A0A0G2K2V5 1-721 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304939 AgrOrtholog
BioCyc Gene G2FUF-15949 BioCyc
Ensembl Genes ENSRNOG00000002144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059814.5 UniProtKB/TrEMBL
  ENSRNOT00000090470 ENTREZGENE
  ENSRNOT00000090470.2 UniProtKB/TrEMBL
  ENSRNOT00000091230 ENTREZGENE
  ENSRNOT00000091230.2 UniProtKB/TrEMBL
  ENSRNOT00000106895 ENTREZGENE
  ENSRNOT00000106895.1 UniProtKB/TrEMBL
  ENSRNOT00000116085 ENTREZGENE
  ENSRNOT00000116085.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.90 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453203 IMAGE-MGC_LOAD
InterPro Exocyst_Exoc1 UniProtKB/TrEMBL
  Sec3-PIP2_bind UniProtKB/TrEMBL
  Sec3_C UniProtKB/TrEMBL
KEGG Report rno:305287 UniProtKB/TrEMBL
MGC_CLONE MGC:114435 IMAGE-MGC_LOAD
NCBI Gene 305287 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 1 UniProtKB/TrEMBL
  SEC3/SYNTAXIN-RELATED UniProtKB/TrEMBL
Pfam Sec3 UniProtKB/TrEMBL
  Sec3-PIP2_bind UniProtKB/TrEMBL
  Sec3_C-term UniProtKB/TrEMBL
PhenoGen Exoc1 PhenoGen
RatGTEx ENSRNOG00000002144 RatGTEx
SMART Sec3-PIP2_bind UniProtKB/TrEMBL
UniProt A0A0G2JYT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K2V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8D1 ENTREZGENE, UniProtKB/TrEMBL
  F1LQN9_RAT UniProtKB/TrEMBL
  Q4V8H2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-07 Exoc1  exocyst complex component 1  Sec3l1  SEC3-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sec3l1  SEC3-like 1 (S. cerevisiae)  Sec3l1_predicted  SEC3-like 1 (S. cerevisiae) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sec3l1_predicted  SEC3-like 1 (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED