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Gene: Ddx31 (DEAD-box helicase 31) Rattus norvegicus

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Symbol:

Ddx31

Name:

DEAD-box helicase 31

RGD ID:

1304895

Description:

Predicted to enable ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31); INTERACTS WITH (+)-schisandrin B; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 31; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31; LOC311835; probable ATP-dependent RNA helicase DDX31

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,570,725 - 32,635,446 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	32,571,020 - 32,636,954 (+)	Ensembl				GRCr8
mRatBN7.2	3	12,172,829 - 12,238,392 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	12,172,836 - 12,238,873 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	15,246,068 - 15,310,588 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,831,036 - 23,895,559 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	22,085,481 - 22,150,009 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	3	30,127,436 - 30,191,861 (+)	NCBI
Lyon_Normotensive	3	37,083,945 - 37,148,248 (+)	NCBI
Lyon_Hypertensive	3	28,983,013 - 29,047,318 (+)	NCBI
F344_StmMcwi	3	10,183,721 - 10,248,390 (+)	NCBI
Rnor_6.0	3	7,422,871 - 7,488,299 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,422,820 - 7,488,617 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	3	12,773,068 - 12,838,525 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	7,849,554 - 7,914,005 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	6,952,740 - 7,017,059 (+)	NCBI		Celera
RGSC_v3.1	3	7,849,651 - 7,914,732 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

cervical cancer (ISO)

chronic lymphocytic leukemia/small lymphocytic lymphoma (ISO)

esophageal cancer (ISO)

Familial Prostate Cancer (ISO)

hepatocellular carcinoma (ISO)

lung cancer (ISO)

melanoma (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian cancer (ISO)

ovarian serous cystadenocarcinoma (ISO)

sarcoma (ISO)

stomach cancer (ISO)

thymoma (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

urinary bladder cancer (ISO)

uterine carcinosarcoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-alpha-phellandrene (ISO)

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-trinitrotoluene (EXP)

2,4-dinitrotoluene (EXP)

3',5'-cyclic AMP (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

caffeine (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

coumarin (EXP,ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

diuron (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxyacetic acid (EXP)

methylmercury chloride (EXP)

Monobutylphthalate (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

pirinixic acid (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosome biogenesis (IBA,IEA,ISO)

Cellular Component

nucleolus (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

ATP binding (IEA)

hydrolase activity (IEA)

nucleic acid binding (IEA)

nucleotide binding (IEA)

RNA binding (IEA)

RNA helicase activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22658674	PMID:22681889	PMID:23019224

Genomics

Comparative Map Data

Ddx31
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,570,725 - 32,635,446 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	32,571,020 - 32,636,954 (+)	Ensembl				GRCr8
mRatBN7.2	3	12,172,829 - 12,238,392 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	12,172,836 - 12,238,873 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	15,246,068 - 15,310,588 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,831,036 - 23,895,559 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	22,085,481 - 22,150,009 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	3	30,127,436 - 30,191,861 (+)	NCBI
Lyon_Normotensive	3	37,083,945 - 37,148,248 (+)	NCBI
Lyon_Hypertensive	3	28,983,013 - 29,047,318 (+)	NCBI
F344_StmMcwi	3	10,183,721 - 10,248,390 (+)	NCBI
Rnor_6.0	3	7,422,871 - 7,488,299 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,422,820 - 7,488,617 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	3	12,773,068 - 12,838,525 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	7,849,554 - 7,914,005 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	6,952,740 - 7,017,059 (+)	NCBI		Celera
RGSC_v3.1	3	7,849,651 - 7,914,732 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

DDX31
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	132,592,997 - 132,669,983 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	132,536,999 - 132,670,401 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	9	135,468,384 - 135,545,370 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	134,459,497 - 134,535,609 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	132,542,803 - 132,575,342	NCBI
Celera	9	106,011,427 - 106,087,527 (-)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	104,963,490 - 105,039,530 (-)	NCBI		HuRef
CHM1_1	9	135,620,049 - 135,696,158 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	144,804,196 - 144,881,203 (-)	NCBI		T2T-CHM13v2.0

Ddx31
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,730,418 - 28,795,587 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	28,730,387 - 28,797,729 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	28,840,406 - 28,905,575 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	28,840,406 - 28,905,571 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	2	28,695,926 - 28,761,095 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	28,662,746 - 28,727,579 (+)	NCBI		MGSCv36	mm8
Celera	2	28,546,305 - 28,611,439 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.38	NCBI

Ddx31
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	1,970,830 - 2,031,908 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955513	1,970,386 - 2,036,572 (-)	NCBI	ChiLan1.0	ChiLan1.0

DDX31
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	6,688,619 - 6,822,160 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	6,690,957 - 6,813,334 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	103,665,553 - 103,787,705 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	132,297,226 - 132,418,713 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	132,341,965 - 132,418,713 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

DDX31
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	51,631,608 - 51,700,747 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	51,629,757 - 51,699,301 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	50,896,296 - 50,965,808 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	52,524,554 - 52,594,192 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	52,523,108 - 52,594,131 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	51,304,543 - 51,374,091 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	51,629,079 - 51,698,570 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	51,708,706 - 51,778,277 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ddx31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	206,539,705 - 206,600,577 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	199,353,677 - 199,412,484 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	19,123,577 - 19,179,117 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	19,123,422 - 19,179,285 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX31
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	272,383,595 - 272,453,979 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	1	272,383,585 - 272,454,395 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	306,415,843 - 306,486,509 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX31
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	12	108,103,310 - 108,239,763 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666079	10,034,035 - 10,170,720 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	12	5,468,127 - 5,545,610 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	5,468,412 - 5,549,120 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Ddx31
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	3,692,248 - 3,763,887 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624760	3,692,548 - 3,765,645 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	12	2,917,866 - 3,013,856 (+)	Ensembl

Ddx31
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	7,767,216 - 7,831,883 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in Ddx31
412 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	74
Count of miRNA genes:	58
Interacting mature miRNAs:	68
Transcripts:	ENSRNOT00000064323
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

WI-20657

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,217,045 - 12,217,295 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,466,959 - 7,467,208	NCBI	Rnor6.0
Rnor_5.0	3	12,817,185 - 12,817,434	UniSTS	Rnor5.0
RGSC_v3.4	3	7,893,566 - 7,893,815	UniSTS	RGSC3.4
Celera	3	6,996,620 - 6,996,869	UniSTS
Cytogenetic Map	3	p12	UniSTS

RH133179

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,237,266 - 12,237,447 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,487,174 - 7,487,354	NCBI	Rnor6.0
Rnor_5.0	3	12,837,400 - 12,837,580	UniSTS	Rnor5.0
RGSC_v3.4	3	7,913,782 - 7,913,962	UniSTS	RGSC3.4
Celera	3	7,016,836 - 7,017,016	UniSTS
Cytogenetic Map	3	p12	UniSTS

BE119836

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,238,193 - 12,238,348 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,488,101 - 7,488,255	NCBI	Rnor6.0
Rnor_5.0	3	12,838,327 - 12,838,481	UniSTS	Rnor5.0
RGSC_v3.4	3	7,914,709 - 7,914,863	UniSTS	RGSC3.4
Celera	3	7,017,763 - 7,017,917	UniSTS
RH 3.4 Map	3	33.4	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
273	156	730	1591	4034	1000	1716	129	863	490	845	155	5362	2588	443	3948	38	1378	737	908	160	158

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC160917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064323 ⟹ ENSRNOP00000061319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	32,571,020 - 32,636,954 (+)	Ensembl
mRatBN7.2 Ensembl	3	12,177,181 - 12,238,873 (+)	Ensembl
Rnor_6.0 Ensembl	3	7,422,820 - 7,488,617 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096302 ⟹ ENSRNOP00000084812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	32,571,020 - 32,636,954 (+)	Ensembl
mRatBN7.2 Ensembl	3	12,172,836 - 12,237,910 (+)	Ensembl

RefSeq Acc Id:

NM_001107824 ⟹ NP_001101294

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	32,570,996 - 32,635,446 (+)	NCBI
mRatBN7.2	3	12,173,032 - 12,237,490 (+)	NCBI
Dahl_SR_JrHsd	3	30,127,436 - 30,191,861 (+)	NCBI
Lyon_Normotensive	3	37,083,945 - 37,148,248 (+)	NCBI
Lyon_Hypertensive	3	28,983,013 - 29,047,318 (+)	NCBI
F344_StmMcwi	3	10,183,721 - 10,248,390 (+)	NCBI
Rnor_6.0	3	7,423,086 - 7,487,397 (+)	NCBI
Rnor_5.0	3	12,773,068 - 12,838,525 (+)	NCBI
RGSC_v3.4	3	7,849,554 - 7,914,005 (+)	RGD
Celera	3	6,952,740 - 7,017,059 (+)	RGD

Sequence:

show sequence

TTGTCTCCGGCCGGTGCCTGCAGCCTTGGCTCCCGGACCCGGAAGGGGCGGCGGCGGACGGGCA
ACAGCTGCGAAGAATCTTACTCTCCACGTGCTGCTCGGGCCTCCTGCTCGGTCTGTGGCTCTGA
GCTCGGACTTTGGCTACAGCCTGAAGCTCTCTCCGACCGGCCTCCCAGGACGTGCTTCGGACGC
ACCCACACCAAGATGAGGCGGCAAACAGAGGCTACCAAGAGAAAGCACCAAGTGTCCAGCGATG
CTCCACCAGCAAAACGGAGGAATGAAATATCCTCTCTTTCAGCCAAGAAAGCCAGCAATAAAGA
AACTCAGAGAGCATTTAAAGGGAGCGCACACAAAACATTTCCTCCAAAGAAGCATTTGGACACT
ATAGGCAATGAAAGGCAAGAGGAGAAGCCGTGTGTTAAGACTTCGTCGCTGTTTAAAAACAATC
CCGAGATCCCAGAACTCCACAGAACAGTAGTGAAGCAGGCTCGAGAGCAAGTGTTCTCTCCAGA
AGCTTTCCAGGAGCTGGACCTCCACCCACATCTAATTTCCACAATAAATACAGTTTTAAAAATG
TCCAGTATGACCAGTGTCCAGAAGCAGAGTATCCCAGTGCTGCTGGAAGGCAGAGATGCCCTTG
TGCGCTCGCAGACGGGCTCAGGTAAAACTCTTGCCTATTGCATCCCTGTGGTCCAGTCTCTTCA
AGCACTGACATCAAAAATACAGCGTAGTGATGGCCCCTATGCTTTGGTCCTAGTGCCCACCAGA
GAGTTGGCTCTGCAAAGCTTTGACACTGTTCAGAAGCTACTTAAGCCATTTACCTGGATTGTTC
CTGGAGTGTTGATGGGCGGAGAGAAGAGGAAATCAGAAAAGGCCAGACTCCGCAAAGGCATAAA
TATCCTTATCTCAACTCCTGGCCGGTTAGTGGATCATATAAAATCCACAAAGAACATTCACTTT
AACCGAGTACGGTGGCTGGTTGTGGATGAAGCAGACAGGATCTTGGATTTGGGCTTTGAGAAGG
ATGTCACCGTGATTCTGAATGCTGTAAATGCTGAGTGTCAGAAGCGGCAGAATGTCCTCCTGTC
AGCGACACTCACGGAAGGTGTAACTCGGCTGGCTGATATCAGTTTGCACAATCCAGTCAGTATC
TCTGTCCTGGACAAAAGTTGGGACCAGCCCAATCCTAAGGAAGTTGCTAGTATCCAGCTGGACA
GCTTTGCCATACCAGAGAGTCTCGACCAGTATGTGGTGTTGGTTCCCAGCAAGCTGCGCCTTGT
CTGCCTTGCAGCCTTCATCCTGAAGAAGTGCAAGTTTGAGAAGGACCAGAAGATGATTGTCTTT
TTCTCAAGTTGTGAGCTGGTAGAGTTCCACTACAACCTCTTCCTTCACACCCTGCTTTGCCACT
CCGGGACCCCTGCTTCAGAGACGCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCA
TGGCAACATGAAGCAGGAGGAAAGAACTTCTGTGTTTCATGAGTTCTCACATTCTGGAACTGGA
GTCCTACTCTGCACAGATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTC
AGTACAGTGCTCCGTCTGCACCTGCAGAGTACATTCACCGCATTGGAAGGACTGCCCGGATCGG
CTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAGTATGTCAACTCGTTGGCT
TCTCACAAAATCAATGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATG
ATTGTTTTAAAAGGAGACAAAGGGGAGCCCAGAGATCCCATGCCACTGGCCCCCAGGAAATCCG
AGAGCGAGCCACGGTGTTGCAGACAGTGTTTGAAGATTATGTGCACTCCAGTCAGAGGATGGTC
TCCTGGGCAAAGAAAGCCCTGCAGTCCTTCATCCGAGCCTATGCCACCTACCCCAAGGAGCTGA
AGTCTATCTTCCATGTCCGGTCCCTACACCTTGGCCATGTGGCTAAGAGTTTCGGACTAAGAGA
TGCTCCTAGAAACCTCGGTGTCTCTGCTGTGAGAAAGGCAAGCTTTAAAAGGCCTGACCCTCGG
AGGAAGACCCAGAGGAAGCACCACCTTGTGCCTGCTGAAGTCCTGCACTCGGAACACTCCAGTG
GGCTGGAGGGCAATGGCCCGAAGGGCAGAAAGCAAGGCCTTCGGGTGGCACCCAGCAAGCCTGG
GCTACGGAGATAATGAAGCTGCTTTTGCATCCAGAAGCTGCTGCCAGCCAGCAAGCTTCTCTGG
GTTGTGTTTTAATTTCTACAGGACCAGGTCAGGGTGGATCCAACATGGCCTCTCAGCTTTAGAT
TGATGTCCTGTTATTAGTGAAGATTCTGAAAAATGACTGGCACCTCTCCCTGAATACAGACTCA
CAAGAGCACAGACCCTCACCTGTTGGAGGAGGAGCCCTGATGAGACCAAGTAGGCCGGGGCCAG
TGCTAAACAGATACCCACCTTTGGCCAGGCCCTGTGAGATTGCACTCATGGACAGCAAGCATCC
TGTGTGTCAGCCTGGAGGAGTGTAGCTCCTGGCAAGCTTGCCAGATTAAGCAGCCACATGTGTA
TTGCATGAGTGCTGTAAGATAAAAGATGTTAAAAACAGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063283927 ⟹ XP_063139997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	32,570,728 - 32,609,145 (+)	NCBI

RefSeq Acc Id:

XR_010064644

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	32,570,725 - 32,616,686 (+)	NCBI

RefSeq Acc Id:

XR_010064645

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	32,570,733 - 32,616,735 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101294	(Get FASTA)	NCBI Sequence Viewer
	XP_063139997	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60917	(Get FASTA)	NCBI Sequence Viewer
	EDL93395	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061319.3
	ENSRNOP00000084812
	ENSRNOP00000084812.1

RefSeq Acc Id:

NP_001101294 ⟸ NM_001107824

- UniProtKB:

B1H297 (UniProtKB/TrEMBL), A0A8I5ZZZ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRRQTEATKRKHQVSSDAPPAKRRNEISSLSAKKASNKETQRAFKGSAHKTFPPKKHLDTIGNE
RQEEKPCVKTSSLFKNNPEIPELHRTVVKQAREQVFSPEAFQELDLHPHLISTINTVLKMSSMT
SVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTSKIQRSDGPYALVLVPTRELAL
QSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVR
WLVVDEADRILDLGFEKDVTVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHNPVSISVLD
KSWDQPNPKEVASIQLDSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKFEKDQKMIVFFSSC
ELVEFHYNLFLHTLLCHSGTPASETLPSASWPLKFLRLHGNMKQEERTSVFHEFSHSGTGVLLC
TDVASRGLDLPQVTWIVQYSAPSAPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKI
NVSEIKLEGILAVLAKDDCFKRRQRGAQRSHATGPQEIRERATVLQTVFEDYVHSSQRMVSWAK
KALQSFIRAYATYPKELKSIFHVRSLHLGHVAKSFGLRDAPRNLGVSAVRKASFKRPDPRRKTQ
RKHHLVPAEVLHSEHSSGLEGNGPKGRKQGLRVAPSKPGLRR

hide sequence

Ensembl Acc Id:

ENSRNOP00000061319 ⟸ ENSRNOT00000064323

Ensembl Acc Id:

ENSRNOP00000084812 ⟸ ENSRNOT00000096302

RefSeq Acc Id:	XP_063139997 ⟸ XM_063283927
- Peptide Label:	isoform X1

Protein Domains

Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V9V8-F1-model_v2	AlphaFold	G3V9V8	1-682	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691939

Promoter ID:

EPDNEW_R2464

Type:

single initiation site

Name:

Ddx31_1

Description:

DEAD-box helicase 31

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	7,422,872 - 7,422,932	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304895	AgrOrtholog
BioCyc Gene	G2FUF-50267	BioCyc
Ensembl Genes	ENSRNOG00000013040	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064323.4	UniProtKB/TrEMBL
	ENSRNOT00000096302	ENTREZGENE
	ENSRNOT00000096302.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7457829	IMAGE-MGC_LOAD
InterPro	DEAD-like_helicase	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	DUF4217	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RNA-helicase_DEAD-box_CS	UniProtKB/TrEMBL
KEGG Report	rno:311835	UniProtKB/TrEMBL
MGC_CLONE	MGC:188660	IMAGE-MGC_LOAD
NCBI Gene	311835	ENTREZGENE
PANTHER	RNA HELICASE	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	DUF4217	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
PhenoGen	Ddx31	PhenoGen
PROSITE	DEAD_ATP_HELICASE	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013040	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	DUF4217	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5ZZZ0	ENTREZGENE, UniProtKB/TrEMBL
	B1H297	ENTREZGENE, UniProtKB/TrEMBL
	G3V9V8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Ddx31	DEAD-box helicase 31	Ddx31	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Ddx31	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	Ddx31	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ddx31	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	Ddx31_predicted	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ddx31_predicted	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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