Chordc1 (cysteine and histidine rich domain containing 1) - Rat Genome Database

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Gene: Chordc1 (cysteine and histidine rich domain containing 1) Rattus norvegicus
Analyze
Symbol: Chordc1
Name: cysteine and histidine rich domain containing 1
RGD ID: 1304679
Description: Predicted to enable Hsp90 protein binding activity; adenyl ribonucleotide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including centrosome duplication; chaperone-mediated protein folding; and regulation of centrosome duplication. Orthologous to human CHORDC1 (cysteine and histidine rich domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CHORD domain-containing protein 1; CHP-1; cysteine and histidine-rich domain (CHORD)-containing 1; cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1; cysteine and histidine-rich domain-containing protein 1; LOC315447; morgana
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,650,721 - 23,674,786 (+)NCBIGRCr8
mRatBN7.2815,374,356 - 15,398,436 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl815,374,471 - 15,399,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx819,360,765 - 19,384,727 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0817,658,562 - 17,682,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0815,554,646 - 15,578,590 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0817,421,552 - 17,445,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl817,421,557 - 17,446,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0817,494,921 - 17,518,882 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,732,905 - 15,759,297 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1815,732,918 - 15,758,837 (+)NCBI
Celera816,803,491 - 16,826,848 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
ADP  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
ATP  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
chlordecone  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
elesclomol  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gedunin  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
haloperidol  (ISO)
hydrazine  (ISO)
hypochlorous acid  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
leflunomide  (ISO)
lithium chloride  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP)
methotrexate  (ISO)
methylarsonic acid  (ISO)
methylisothiazolinone  (ISO)
methylparaben  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12965203   PMID:19875381   PMID:20230755   PMID:20493909   PMID:23184943  


Genomics

Comparative Map Data
Chordc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,650,721 - 23,674,786 (+)NCBIGRCr8
mRatBN7.2815,374,356 - 15,398,436 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl815,374,471 - 15,399,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx819,360,765 - 19,384,727 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0817,658,562 - 17,682,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0815,554,646 - 15,578,590 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0817,421,552 - 17,445,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl817,421,557 - 17,446,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0817,494,921 - 17,518,882 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,732,905 - 15,759,297 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1815,732,918 - 15,758,837 (+)NCBI
Celera816,803,491 - 16,826,848 (+)NCBICelera
Cytogenetic Map8q13NCBI
CHORDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381190,200,429 - 90,223,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1190,200,429 - 90,223,077 (-)EnsemblGRCh38hg38GRCh38
GRCh371189,933,597 - 89,956,217 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361189,574,265 - 89,595,854 (-)NCBINCBI36Build 36hg18NCBI36
Build 341189,574,264 - 89,595,854NCBI
Celera1187,234,115 - 87,257,056 (-)NCBICelera
Cytogenetic Map11q14.3NCBI
HuRef1186,018,019 - 86,040,962 (-)NCBIHuRef
CHM1_11189,816,615 - 89,839,542 (-)NCBICHM1_1
T2T-CHM13v2.01190,120,509 - 90,143,130 (-)NCBIT2T-CHM13v2.0
Chordc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39918,203,563 - 18,225,296 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl918,203,421 - 18,228,738 (+)EnsemblGRCm39 Ensembl
GRCm38918,292,267 - 18,314,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl918,292,125 - 18,317,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv37918,096,711 - 18,118,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36918,042,669 - 18,064,402 (+)NCBIMGSCv36mm8
Celera915,575,575 - 15,597,308 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map97.01NCBI
Chordc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554143,699,769 - 3,717,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554143,699,652 - 3,717,200 (+)NCBIChiLan1.0ChiLan1.0
CHORDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2991,014,849 - 91,038,851 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11192,094,735 - 92,123,036 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01185,170,779 - 85,193,659 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11188,660,038 - 88,689,535 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,668,179 - 88,689,378 (-)Ensemblpanpan1.1panPan2
CHORDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12110,129,812 - 10,152,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2110,129,341 - 10,149,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2110,026,591 - 10,048,553 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02110,311,656 - 10,333,767 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2110,311,168 - 10,344,822 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12110,106,512 - 10,128,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02110,165,450 - 10,187,312 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02110,215,497 - 10,237,595 (+)NCBIUU_Cfam_GSD_1.0
Chordc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494775,741,963 - 75,761,697 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936893644,435 - 663,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936893644,977 - 661,651 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHORDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl923,181,850 - 23,208,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1923,187,770 - 23,208,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2926,044,315 - 26,060,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHORDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1181,326,464 - 81,350,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl181,328,422 - 81,350,214 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604344,399,584 - 44,429,216 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chordc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624845225,718 - 244,636 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624845226,022 - 244,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chordc1
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:617
Count of miRNA genes:286
Interacting mature miRNAs:362
Transcripts:ENSRNOT00000030569
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat

Markers in Region
BE120647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2815,379,184 - 15,379,340 (+)MAPPERmRatBN7.2
Rnor_6.0817,426,266 - 17,426,421NCBIRnor6.0
Rnor_5.0817,499,635 - 17,499,790UniSTSRnor5.0
RGSC_v3.4815,737,619 - 15,737,774UniSTSRGSC3.4
Celera816,808,205 - 16,808,360UniSTS
Cytogenetic Map8q12UniSTS
RH139249  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2815,398,334 - 15,398,454 (+)MAPPERmRatBN7.2
Rnor_6.0817,445,412 - 17,445,531NCBIRnor6.0
Rnor_5.0817,518,781 - 17,518,900UniSTSRnor5.0
RGSC_v3.4815,759,196 - 15,759,315UniSTSRGSC3.4
Celera816,826,747 - 16,826,866UniSTS
RH 3.4 Map8140.2UniSTS
Cytogenetic Map8q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 35 19 35 8 10 74 35 36 11 8
Low 6 6 6 1 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030569   ⟹   ENSRNOP00000030171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl815,374,472 - 15,399,162 (+)Ensembl
Rnor_6.0 Ensembl817,421,557 - 17,446,165 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109292   ⟹   ENSRNOP00000081675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl815,374,471 - 15,392,694 (+)Ensembl
RefSeq Acc Id: NM_001108128   ⟹   NP_001101598
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,650,821 - 23,674,786 (+)NCBI
mRatBN7.2815,374,471 - 15,398,436 (+)NCBI
Rnor_6.0817,421,552 - 17,445,513 (+)NCBI
Rnor_5.0817,494,921 - 17,518,882 (+)NCBI
RGSC_v3.4815,732,905 - 15,759,297 (+)RGD
Celera816,803,491 - 16,826,848 (+)RGD
Sequence:
RefSeq Acc Id: XR_005487807
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,650,721 - 23,670,358 (+)NCBI
mRatBN7.2815,374,356 - 15,393,917 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101598 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D4A4T9 (Get FASTA)   NCBI Sequence Viewer  
  EDL78419 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030171.5
  ENSRNOP00000081675.1
Reference Protein Sequences
RefSeq Acc Id: NP_001101598   ⟸   NM_001108128
- UniProtKB: D4A4T9 (UniProtKB/Swiss-Prot),   A0A8L2QG05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000030171   ⟸   ENSRNOT00000030569
RefSeq Acc Id: ENSRNOP00000081675   ⟸   ENSRNOT00000109292
Protein Domains
CHORD   CS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4T9-F1-model_v2 AlphaFold D4A4T9 1-331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695757
Promoter ID:EPDNEW_R6282
Type:initiation region
Name:Chordc1_1
Description:cysteine and histidine rich domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0817,421,596 - 17,421,656EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304679 AgrOrtholog
BioCyc Gene G2FUF-31605 BioCyc
Ensembl Genes ENSRNOG00000026643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030569.6 UniProtKB/TrEMBL
  ENSRNOT00000109292.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.1130.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CHORD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHORD_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:315447 UniProtKB/Swiss-Prot
NCBI Gene 315447 ENTREZGENE
PANTHER CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12621 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CHORD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF04969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chordc1 PhenoGen
PROSITE CHORD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS51203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026643 RatGTEx
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZS55_RAT UniProtKB/TrEMBL
  A0A8L2QG05 ENTREZGENE, UniProtKB/TrEMBL
  CHRD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Chordc1  cysteine and histidine rich domain containing 1  Chordc1  cysteine and histidine-rich domain (CHORD)-containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Chordc1  cysteine and histidine-rich domain (CHORD)-containing 1  Chordc1  cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chordc1  cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1   Chordc1_predicted  cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chordc1_predicted  cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED