Emcn (endomucin) - Rat Genome Database

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Gene: Emcn (endomucin) Rattus norvegicus
Analyze
Symbol: Emcn
Name: endomucin
RGD ID: 1303218
Description: Predicted to enable carbohydrate binding activity. Predicted to be involved in angiogenesis; cell-cell adhesion; and regulation of cell adhesion. Predicted to act upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in plasma membrane. Orthologous to human EMCN (endomucin); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94175; sialomucin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82228,564,445 - 228,644,370 (+)NCBIGRCr8
mRatBN7.22225,891,100 - 225,970,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2225,891,100 - 225,970,929 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2233,632,075 - 233,711,964 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02231,531,827 - 231,611,726 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02226,396,447 - 226,476,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02242,634,319 - 242,715,489 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2242,634,399 - 242,714,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,184,257 - 261,264,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42234,892,271 - 234,972,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12234,879,010 - 234,958,963 (+)NCBI
Celera2218,061,273 - 218,141,092 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(S)-nicotine  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dinitrotoluene  (EXP)
3,7-dihydropurine-6-thione  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
fipronil  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
glycidol  (EXP)
indoles  (EXP)
lead diacetate  (EXP)
mercaptopurine  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nitrofen  (EXP)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
purine-6-thiol  (EXP)
rotenone  (EXP,ISO)
silicon dioxide  (EXP)
Soman  (EXP)
tetrachloromethane  (EXP)
tetraphene  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Biochemical characterization and molecular cloning of a novel endothelial-specific sialomucin. Morgan SM, etal., Blood 1999 Jan 1;93(1):165-75.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Nine Genes Mediate the Therapeutic Effects of Iodine-131 Radiotherapy in Thyroid Carcinoma Patients. Shuwen H, etal., Dis Markers. 2020 Jun 16;2020:9369341. doi: 10.1155/2020/9369341. eCollection 2020.
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Emcn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82228,564,445 - 228,644,370 (+)NCBIGRCr8
mRatBN7.22225,891,100 - 225,970,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2225,891,100 - 225,970,929 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2233,632,075 - 233,711,964 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02231,531,827 - 231,611,726 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02226,396,447 - 226,476,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02242,634,319 - 242,715,489 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2242,634,399 - 242,714,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,184,257 - 261,264,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42234,892,271 - 234,972,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12234,879,010 - 234,958,963 (+)NCBI
Celera2218,061,273 - 218,141,092 (+)NCBICelera
Cytogenetic Map2q43NCBI
EMCN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384100,395,341 - 100,518,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4100,395,341 - 100,880,126 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,316,498 - 101,439,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364101,538,004 - 101,658,202 (-)NCBINCBI36Build 36hg18NCBI36
Celera498,613,843 - 98,736,427 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef497,054,787 - 97,177,386 (-)NCBIHuRef
CHM1_14101,293,076 - 101,415,800 (-)NCBICHM1_1
T2T-CHM13v2.04103,710,663 - 103,833,329 (-)NCBIT2T-CHM13v2.0
Emcn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,046,824 - 137,136,830 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,046,828 - 137,137,946 (+)EnsemblGRCm39 Ensembl
GRCm383137,341,062 - 137,431,069 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3137,341,067 - 137,432,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,004,042 - 137,094,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363137,278,530 - 137,368,456 (+)NCBIMGSCv36mm8
Celera3143,770,513 - 143,859,589 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map363.65NCBI
Emcn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554967,413,228 - 7,498,983 (+)NCBIChiLan1.0ChiLan1.0
EMCN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2398,472,000 - 98,600,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1498,758,149 - 98,886,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0492,813,553 - 92,942,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14103,474,788 - 103,603,125 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4103,474,788 - 103,603,125 (-)Ensemblpanpan1.1panPan2
EMCN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13222,225,159 - 22,320,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3222,226,042 - 22,320,063 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3219,573,324 - 19,697,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03222,421,149 - 22,540,785 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3222,446,561 - 22,540,615 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13222,397,364 - 22,521,292 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03222,183,328 - 22,303,339 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03217,563,776 - 17,683,700 (+)NCBIUU_Cfam_GSD_1.0
Emcn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530119,204,631 - 19,310,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365202,547,963 - 2,653,861 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365202,548,042 - 2,653,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMCN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,145,804 - 120,230,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,174,091 - 120,227,971 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28129,169,164 - 129,176,656 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EMCN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1748,523,083 - 48,637,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl748,520,708 - 48,637,631 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,994,482 - 27,110,633 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emcn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248306,917,405 - 7,002,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248306,917,397 - 7,001,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Emcn
774 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:49
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000035700
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat

Markers in Region
RH137100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22225,970,767 - 225,970,928 (+)MAPPERmRatBN7.2
Rnor_6.02242,714,021 - 242,714,181NCBIRnor6.0
Rnor_5.02261,264,132 - 261,264,292UniSTSRnor5.0
RGSC_v3.42234,972,062 - 234,972,222UniSTSRGSC3.4
Celera2218,140,928 - 218,141,088UniSTS
RH 3.4 Map21600.7UniSTS
Cytogenetic Map2q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 18 8 5 8 8 9 47 35 33 11 8
Low 3 39 33 14 33 2 27 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000035700   ⟹   ENSRNOP00000033031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2225,891,100 - 225,970,929 (+)Ensembl
Rnor_6.0 Ensembl2242,634,399 - 242,714,182 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117162   ⟹   ENSRNOP00000097837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2225,891,100 - 225,964,597 (+)Ensembl
RefSeq Acc Id: NM_001004228   ⟹   NP_001004228
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82228,564,539 - 228,644,370 (+)NCBI
mRatBN7.22225,891,100 - 225,970,932 (+)NCBI
Rnor_6.02242,634,399 - 242,714,185 (+)NCBI
Rnor_5.02261,184,257 - 261,264,437 (+)NCBI
RGSC_v3.42234,892,271 - 234,972,226 (+)RGD
Celera2218,061,273 - 218,141,092 (+)RGD
Sequence:
RefSeq Acc Id: XM_063281668   ⟹   XP_063137738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82228,564,445 - 228,644,370 (+)NCBI
RefSeq Acc Id: XM_063281669   ⟹   XP_063137739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82228,564,445 - 228,644,370 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001004228   ⟸   NM_001004228
- Peptide Label: precursor
- UniProtKB: Q6AY82 (UniProtKB/Swiss-Prot),   A6HW00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000033031   ⟸   ENSRNOT00000035700
RefSeq Acc Id: ENSRNOP00000097837   ⟸   ENSRNOT00000117162
RefSeq Acc Id: XP_063137738   ⟸   XM_063281668
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063137739   ⟸   XM_063281669
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY82-F1-model_v2 AlphaFold Q6AY82 1-250 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691776
Promoter ID:EPDNEW_R2301
Type:single initiation site
Name:Emcn_1
Description:endomucin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02242,634,385 - 242,634,445EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303218 AgrOrtholog
BioCyc Gene G2FUF-51117 BioCyc
Ensembl Genes ENSRNOG00000022910 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035700 ENTREZGENE
  ENSRNOT00000035700.4 UniProtKB/Swiss-Prot
  ENSRNOT00000117162.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7128709 IMAGE-MGC_LOAD
InterPro Endomucin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:295490 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94175 IMAGE-MGC_LOAD
NCBI Gene 295490 ENTREZGENE
PANTHER ENDOMUCIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15869 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Endomucin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Emcn PhenoGen
RatGTEx ENSRNOG00000022910 RatGTEx
UniProt A0A8I6ARX5_RAT UniProtKB/TrEMBL
  A6HVZ9_RAT UniProtKB/TrEMBL
  A6HW00 ENTREZGENE, UniProtKB/TrEMBL
  A6HW01_RAT UniProtKB/TrEMBL
  A6HW02_RAT UniProtKB/TrEMBL
  MUCEN_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-02-17 Emcn    MGC94175  endomucin  Symbol updated 1299863 APPROVED