St6galnac6 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6) - Rat Genome Database

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Gene: St6galnac6 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6) Rattus norvegicus
Analyze
Symbol: St6galnac6
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
RGD ID: 1303196
Description: Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ceramide metabolic process; glycoprotein metabolic process; and oligosaccharide biosynthetic process. Predicted to be located in cytoplasm. Orthologous to human ST6GALNAC6 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-2,6-sialyltransferase ST6GalNAc VI; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6; MGC109387; sialyltransferase 7F; Siat7F; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6; ST6 GalNAc alpha-2,6-sialyltransferase 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,283,573 - 36,305,217 (+)NCBIGRCr8
mRatBN7.2315,894,275 - 15,907,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,885,968 - 15,907,496 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,962,923 - 18,976,124 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,547,929 - 27,561,130 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,799,025 - 25,812,232 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,620,050 - 11,641,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,629,556 - 11,641,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,966,937 - 16,987,559 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,639,217 - 10,647,359 (+)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Molecular cloning and expression of mouse GD1alpha/GT1aalpha/GQ1balpha synthase (ST6GalNAc VI) gene. Okajima T, etal., J Biol Chem 2000 Mar 10;275(10):6717-23.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12668675   PMID:15843597   PMID:17123352  


Genomics

Comparative Map Data
St6galnac6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,283,573 - 36,305,217 (+)NCBIGRCr8
mRatBN7.2315,894,275 - 15,907,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,885,968 - 15,907,496 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,962,923 - 18,976,124 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,547,929 - 27,561,130 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,799,025 - 25,812,232 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,620,050 - 11,641,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,629,556 - 11,641,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,966,937 - 16,987,559 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,639,217 - 10,647,359 (+)NCBICelera
Cytogenetic Map3p11NCBI
ST6GALNAC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,885,321 - 127,906,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,885,321 - 127,905,408 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,647,600 - 130,668,895 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,687,422 - 129,701,692 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,727,154 - 127,741,425NCBI
Celera9101,298,831 - 101,313,105 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,265,102 - 100,277,637 (-)NCBIHuRef
CHM1_19130,799,925 - 130,814,196 (-)NCBICHM1_1
T2T-CHM13v2.09140,093,108 - 140,114,388 (-)NCBIT2T-CHM13v2.0
St6galnac6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,489,721 - 32,510,821 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,489,721 - 32,510,818 (+)EnsemblGRCm39 Ensembl
GRCm38232,599,709 - 32,620,809 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,599,709 - 32,620,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,455,229 - 32,476,324 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,421,718 - 32,442,813 (+)NCBIMGSCv36mm8
Celera232,306,388 - 32,327,465 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
St6galnac6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419772,837 - 796,724 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419771,721 - 792,756 (+)NCBIChiLan1.0ChiLan1.0
ST6GALNAC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,446,578 - 11,468,292 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,448,835 - 11,470,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,005,336 - 99,025,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,677,841 - 127,697,875 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,677,841 - 127,697,880 (-)Ensemblpanpan1.1panPan2
ST6GALNAC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,520,083 - 55,533,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,520,109 - 55,532,055 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,714,200 - 54,727,293 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,442,160 - 56,455,278 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,442,174 - 56,456,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,202,127 - 55,215,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,516,868 - 55,529,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,608,101 - 55,621,233 (+)NCBIUU_Cfam_GSD_1.0
St6galnac6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,753,759 - 195,766,241 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,522,266 - 15,539,947 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,522,286 - 15,534,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,371,569 - 268,383,559 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,293,882 - 302,311,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST6GALNAC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,217,546 - 10,238,317 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,218,036 - 10,238,350 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660795,980,110 - 6,002,056 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St6galnac6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,667,189 - 7,677,662 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,666,798 - 7,678,926 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in St6galnac6
75 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:218
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000074401
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat

Markers in Region
RH143353  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,903,602 - 15,903,746 (+)MAPPERmRatBN7.2
Rnor_6.0311,637,566 - 11,637,709NCBIRnor6.0
Rnor_5.0316,983,665 - 16,983,808UniSTSRnor5.0
Celera310,643,465 - 10,643,608UniSTS
RH 3.4 Map372.9UniSTS
BI274759  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,907,161 - 15,907,371 (+)MAPPERmRatBN7.2
Rnor_6.0311,641,125 - 11,641,334NCBIRnor6.0
Rnor_5.0316,987,224 - 16,987,433UniSTSRnor5.0
Celera310,647,024 - 10,647,233UniSTS
RH 3.4 Map372.0UniSTS
BI274759  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,907,221 - 15,907,402 (+)MAPPERmRatBN7.2
Rnor_6.0311,641,185 - 11,641,365NCBIRnor6.0
Rnor_5.0316,987,284 - 16,987,464UniSTSRnor5.0
Celera310,647,084 - 10,647,264UniSTS
RH 3.4 Map372.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 37 47 37 3 37 8 11 74 27 34 8 8
Low 1 6 10 4 16 4 8 7 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ646881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074401   ⟹   ENSRNOP00000063995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,894,320 - 15,907,495 (+)Ensembl
Rnor_6.0 Ensembl311,629,556 - 11,641,466 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094850   ⟹   ENSRNOP00000088563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,885,968 - 15,907,496 (+)Ensembl
RefSeq Acc Id: NM_001398944   ⟹   NP_001385873
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,996 - 36,305,217 (+)NCBI
mRatBN7.2315,894,275 - 15,907,497 (+)NCBI
RefSeq Acc Id: XM_039105642   ⟹   XP_038961570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,995 - 36,305,217 (+)NCBI
mRatBN7.2315,894,278 - 15,907,502 (+)NCBI
RefSeq Acc Id: XM_063284317   ⟹   XP_063140387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,996 - 36,305,217 (+)NCBI
RefSeq Acc Id: XM_063284318   ⟹   XP_063140388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,283,614 - 36,305,217 (+)NCBI
RefSeq Acc Id: XM_063284319   ⟹   XP_063140389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,283,573 - 36,305,217 (+)NCBI
RefSeq Acc Id: XM_063284320   ⟹   XP_063140390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,292,012 - 36,305,217 (+)NCBI
RefSeq Acc Id: XM_063284321   ⟹   XP_063140391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,999 - 36,305,217 (+)NCBI
RefSeq Acc Id: XR_005501954
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,996 - 36,303,963 (+)NCBI
mRatBN7.2315,894,279 - 15,907,502 (+)NCBI
RefSeq Acc Id: XR_005501955
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,291,996 - 36,303,966 (+)NCBI
mRatBN7.2315,894,279 - 15,906,245 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000063995   ⟸   ENSRNOT00000074401
RefSeq Acc Id: XP_038961570   ⟸   XM_039105642
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000088563   ⟸   ENSRNOT00000094850
RefSeq Acc Id: NP_001385873   ⟸   NM_001398944
- UniProtKB: M0R3S4 (UniProtKB/TrEMBL),   A6JU71 (UniProtKB/TrEMBL),   Q6ZXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140389   ⟸   XM_063284319
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140388   ⟸   XM_063284318
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140387   ⟸   XM_063284317
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140391   ⟸   XM_063284321
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140390   ⟸   XM_063284320
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZXY0-F1-model_v2 AlphaFold Q6ZXY0 1-299 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303196 AgrOrtholog
BioCyc Gene G2FUF-50130 BioCyc
Ensembl Genes ENSRNOG00000046984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074401 ENTREZGENE
  ENSRNOT00000074401.3 UniProtKB/TrEMBL
  ENSRNOT00000094850.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317530 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report rno:407765 UniProtKB/TrEMBL
MGC_CLONE MGC:109387 IMAGE-MGC_LOAD
NCBI Gene 407765 ENTREZGENE
PANTHER ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 6 UniProtKB/TrEMBL
  PTHR45906 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PhenoGen St6galnac6 PhenoGen
PIRSF Sialyl_trans UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046984 RatGTEx
UniProt A0A8I6A8C0_RAT UniProtKB/TrEMBL
  A6JU71 ENTREZGENE, UniProtKB/TrEMBL
  M0R3S4 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJS3_RAT UniProtKB/TrEMBL
  Q6ZXY0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 St6galnac6  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6  St6galnac6  ST6 GalNAc alpha-2,6-sialyltransferase 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 St6galnac6  ST6 GalNAc alpha-2,6-sialyltransferase 6  St6galnac6  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-07 St6galnac6  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6  Siat7F  sialyltransferase 7F  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-14 Siat7F  sialyltransferase 7F      Symbol and Name status set to provisional 70820 PROVISIONAL