Apold1 (apolipoprotein L domain containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Apold1 (apolipoprotein L domain containing 1) Rattus norvegicus
Analyze
Symbol: Apold1
Name: apolipoprotein L domain containing 1
RGD ID: 1303123
Description: Predicted to enable lipid binding activity. Involved in several processes, including angiogenesis; endothelial cell activation; and regulation of endothelial cell differentiation. Predicted to be located in extracellular region and plasma membrane. Orthologous to human APOLD1 (apolipoprotein L domain containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: apolipoprotein L domain-containing protein 1; vascular early response gene protein; Verge
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,499,728 - 169,557,075 (+)NCBIGRCr8
mRatBN7.24167,768,437 - 167,825,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,818,271 - 167,825,706 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4174,114,682 - 174,119,158 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,897,653 - 169,902,129 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,521,601 - 168,526,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,752,142 - 168,755,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,752,133 - 168,755,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04233,025,359 - 233,028,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,904,804 - 171,907,686 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14172,149,739 - 172,152,621 (+)NCBI
Celera4156,420,297 - 156,423,179 (+)NCBICelera
Cytogenetic Map4q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glycidol  (EXP)
hydrogen sulfide  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
manganese(II) chloride  (EXP)
methamphetamine  (EXP)
methimazole  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
phenformin  (EXP)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
lipid binding  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Verge: a novel vascular early response gene. Regard JB, etal., J Neurosci 2004 Apr 21;24(16):4092-103.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Apold1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,499,728 - 169,557,075 (+)NCBIGRCr8
mRatBN7.24167,768,437 - 167,825,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,818,271 - 167,825,706 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4174,114,682 - 174,119,158 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,897,653 - 169,902,129 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,521,601 - 168,526,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,752,142 - 168,755,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,752,133 - 168,755,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04233,025,359 - 233,028,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,904,804 - 171,907,686 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14172,149,739 - 172,152,621 (+)NCBI
Celera4156,420,297 - 156,423,179 (+)NCBICelera
Cytogenetic Map4q43NCBI
APOLD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,725,917 - 12,791,466 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,725,917 - 12,829,975 (+)EnsemblGRCh38hg38GRCh38
GRCh371212,878,851 - 12,944,400 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,829,882 - 12,835,664 (+)NCBINCBI36Build 36hg18NCBI36
Celera1218,027,373 - 18,093,110 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1212,648,449 - 12,714,116 (+)NCBIHuRef
CHM1_11212,844,230 - 12,909,797 (+)NCBICHM1_1
T2T-CHM13v2.01212,599,454 - 12,665,025 (+)NCBIT2T-CHM13v2.0
Apold1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,958,964 - 134,963,799 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6134,958,681 - 134,963,799 (+)EnsemblGRCm39 Ensembl
GRCm386134,982,001 - 134,986,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,981,718 - 134,986,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv376134,932,019 - 134,936,854 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366134,947,694 - 134,952,529 (+)NCBIMGSCv36mm8
Celera6137,939,925 - 137,944,652 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.77NCBI
Apold1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,681,955 - 9,687,910 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,682,032 - 9,685,965 (+)NCBIChiLan1.0ChiLan1.0
APOLD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21018,194,329 - 18,260,106 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11218,191,076 - 18,256,865 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,750,822 - 12,816,439 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,129,855 - 13,194,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,129,855 - 13,194,932 (+)Ensemblpanpan1.1panPan2
APOLD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,542,646 - 33,548,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,545,702 - 33,604,476 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,896,836 - 12,902,408 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02733,850,135 - 33,855,710 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2733,853,192 - 33,912,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12733,743,167 - 33,748,738 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,693,452 - 33,698,995 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,631,034 - 12,636,608 (+)NCBIUU_Cfam_GSD_1.0
Apold1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494594,784,919 - 94,797,627 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,512,368 - 4,517,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,512,440 - 4,517,183 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOLD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,667,585 - 59,673,649 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1559,667,088 - 59,672,021 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
APOLD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,620,649 - 12,692,395 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606922,626,152 - 22,698,607 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apold1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,140,932 - 25,145,333 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,139,100 - 25,144,958 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Apold1
113 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:627
Count of miRNA genes:300
Interacting mature miRNAs:387
Transcripts:ENSRNOT00000010289
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 2 2 2 14 14 8
Low 3 22 55 39 19 39 8 11 60 21 29 11 8
Below cutoff 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY673969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000010289   ⟹   ENSRNOP00000010289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4167,820,968 - 167,825,706 (+)Ensembl
Rnor_6.0 Ensembl4168,752,133 - 168,755,023 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102557   ⟹   ENSRNOP00000079429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4167,818,271 - 167,824,564 (+)Ensembl
RefSeq Acc Id: NM_001003403   ⟹   NP_001003403
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,552,599 - 169,557,075 (+)NCBI
mRatBN7.24167,821,230 - 167,825,706 (+)NCBI
Rnor_6.04168,752,142 - 168,755,024 (+)NCBI
Rnor_5.04233,025,359 - 233,028,241 (+)NCBI
RGSC_v3.44171,904,804 - 171,907,686 (+)RGD
Celera4156,420,297 - 156,423,179 (+)RGD
Sequence:
RefSeq Acc Id: XM_039108001   ⟹   XP_038963929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,057 - 169,557,075 (+)NCBI
mRatBN7.24167,768,716 - 167,825,706 (+)NCBI
RefSeq Acc Id: XM_039108003   ⟹   XP_038963931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,057 - 169,557,075 (+)NCBI
mRatBN7.24167,768,716 - 167,825,706 (+)NCBI
RefSeq Acc Id: XM_039108004   ⟹   XP_038963932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,057 - 169,557,075 (+)NCBI
mRatBN7.24167,768,716 - 167,825,706 (+)NCBI
RefSeq Acc Id: XM_039108005   ⟹   XP_038963933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,057 - 169,557,075 (+)NCBI
mRatBN7.24167,768,716 - 167,825,706 (+)NCBI
RefSeq Acc Id: XM_039108006   ⟹   XP_038963934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,552,656 - 169,557,075 (+)NCBI
mRatBN7.24167,821,284 - 167,825,706 (+)NCBI
RefSeq Acc Id: XM_063286434   ⟹   XP_063142504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,545,656 - 169,557,075 (+)NCBI
RefSeq Acc Id: XM_063286435   ⟹   XP_063142505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,545,655 - 169,557,075 (+)NCBI
RefSeq Acc Id: XR_005503268
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,499,728 - 169,522,590 (+)NCBI
mRatBN7.24167,768,815 - 167,791,814 (+)NCBI
RefSeq Acc Id: XR_005503269
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,108 - 169,523,186 (+)NCBI
mRatBN7.24167,768,775 - 167,791,814 (+)NCBI
RefSeq Acc Id: XR_005503270
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,051 - 169,522,590 (+)NCBI
mRatBN7.24167,768,715 - 167,791,814 (+)NCBI
RefSeq Acc Id: XR_005503271
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,500,032 - 169,523,186 (+)NCBI
mRatBN7.24167,768,671 - 167,791,814 (+)NCBI
RefSeq Acc Id: XR_005503274
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,499,728 - 169,544,839 (+)NCBI
mRatBN7.24167,768,437 - 167,813,468 (+)NCBI
RefSeq Acc Id: XR_010065682
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,499,741 - 169,523,186 (+)NCBI
RefSeq Acc Id: XR_010065683
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,499,728 - 169,519,865 (+)NCBI
RefSeq Acc Id: NP_001003403   ⟸   NM_001003403
- UniProtKB: Q6B959 (UniProtKB/Swiss-Prot),   A6IME9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010289   ⟸   ENSRNOT00000010289
RefSeq Acc Id: XP_038963929   ⟸   XM_039108001
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963931   ⟸   XM_039108003
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963932   ⟸   XM_039108004
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963933   ⟸   XM_039108005
- Peptide Label: isoform X3
- UniProtKB: Q6B959 (UniProtKB/Swiss-Prot),   A6IME9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963934   ⟸   XM_039108006
- Peptide Label: isoform X3
- UniProtKB: Q6B959 (UniProtKB/Swiss-Prot),   A6IME9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079429   ⟸   ENSRNOT00000102557
RefSeq Acc Id: XP_063142505   ⟸   XM_063286435
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142504   ⟸   XM_063286434
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6B959-F1-model_v2 AlphaFold Q6B959 1-246 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303123 AgrOrtholog
BioCyc Gene G2FUF-42642 BioCyc
Ensembl Genes ENSRNOG00000007830 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055024971 UniProtKB/Swiss-Prot
  ENSRNOG00060016190 UniProtKB/Swiss-Prot
  ENSRNOG00065012017 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010289 ENTREZGENE
  ENSRNOT00000010289.5 UniProtKB/Swiss-Prot
  ENSRNOT00000102557.1 UniProtKB/TrEMBL
  ENSRNOT00055043034 UniProtKB/Swiss-Prot
  ENSRNOT00060027716 UniProtKB/Swiss-Prot
  ENSRNOT00065019539 UniProtKB/Swiss-Prot
InterPro ApoL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:444983 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 444983 ENTREZGENE
PANTHER APOLIPOPROTEIN L DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ApoL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Apold1 PhenoGen
RatGTEx ENSRNOG00000007830 RatGTEx
  ENSRNOG00055024971 RatGTEx
  ENSRNOG00060016190 RatGTEx
  ENSRNOG00065012017 RatGTEx
UniProt A0A8I6G5B0 ENTREZGENE, UniProtKB/TrEMBL
  A6IME9 ENTREZGENE, UniProtKB/TrEMBL
  APLD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-15 Apold1  apolipoprotein L domain containing 1  Verge  vascular early response gene protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 Verge  vascular early response gene protein      Symbol and Name status set to provisional 70820 PROVISIONAL