Gpsm3 (G-protein signaling modulator 3) - Rat Genome Database

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Gene: Gpsm3 (G-protein signaling modulator 3) Rattus norvegicus
Analyze
Symbol: Gpsm3
Name: G-protein signaling modulator 3
RGD ID: 1303014
Description: Predicted to enable GTPase regulator activity. Predicted to be involved in positive regulation of inflammatory response. Predicted to act upstream of or within positive regulation of cytokine production involved in inflammatory response and positive regulation of leukocyte chemotaxis. Predicted to be located in plasma membrane. Orthologous to human GPSM3 (G protein signaling modulator 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activator of G-protein signalling 4; AGS4; G-protein signaling modulator 3 (AGS3-like, C. elegans); G-protein signalling modulator 3 (AGS3-like, C. elegans); G-protein-signaling modulator 3; G18; MGC108946; Ng1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,161,730 - 4,163,591 (-)NCBIGRCr8
mRatBN7.2204,157,123 - 4,158,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,863,725 - 4,865,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,225,477 - 4,227,338 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,756,372 - 4,758,233 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,355,246 - 4,357,107 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,434,602 - 6,436,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,259,883 - 4,261,744 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,260,109 - 4,261,971 (-)NCBI
Celera203,871,297 - 3,873,158 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of AGS4: a protein containing three G-protein regulatory motifs that regulate the activation state of Gialpha. Cao X, etal., J Biol Chem 2004 Jun 25;279(26):27567-74. Epub 2004 Apr 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15060004   PMID:15489334   PMID:23280397  


Genomics

Comparative Map Data
Gpsm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,161,730 - 4,163,591 (-)NCBIGRCr8
mRatBN7.2204,157,123 - 4,158,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,863,725 - 4,865,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,225,477 - 4,227,338 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,756,372 - 4,758,233 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,355,246 - 4,357,107 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,434,602 - 6,436,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,259,883 - 4,261,744 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,260,109 - 4,261,971 (-)NCBI
Celera203,871,297 - 3,873,158 (+)NCBICelera
Cytogenetic Map20p12NCBI
GPSM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,190,766 - 32,195,523 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,190,766 - 32,195,523 (-)EnsemblGRCh38hg38GRCh38
GRCh37632,158,543 - 32,163,300 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,266,521 - 32,271,278 (-)NCBINCBI36Build 36hg18NCBI36
Build 34632,266,521 - 32,271,278NCBI
Celera633,725,587 - 33,730,344 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef631,912,738 - 31,917,495 (-)NCBIHuRef
CHM1_1632,161,027 - 32,165,784 (-)NCBICHM1_1
T2T-CHM13v2.0632,043,955 - 32,048,712 (-)NCBIT2T-CHM13v2.0
Gpsm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,808,780 - 34,810,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,808,780 - 34,810,728 (+)EnsemblGRCm39 Ensembl
GRCm381734,589,806 - 34,591,754 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,589,806 - 34,591,754 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,726,751 - 34,728,699 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,198,001 - 34,199,808 (+)NCBIMGSCv36mm8
Celera1737,684,966 - 37,686,914 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.17NCBI
Gpsm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437654,475 - 656,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437654,475 - 656,335 (-)NCBIChiLan1.0ChiLan1.0
GPSM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,653,836 - 46,659,883 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,615,315 - 42,617,160 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,838,154 - 31,840,312 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,718,033 - 32,720,335 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,718,033 - 32,720,348 (-)Ensemblpanpan1.1panPan2
GPSM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,583,438 - 1,585,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,583,431 - 1,585,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,717,187 - 1,719,067 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,721,720 - 1,723,600 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,722,258 - 1,723,467 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,584,742 - 1,586,622 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,650,341 - 1,652,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,716,662 - 1,718,542 (-)NCBIUU_Cfam_GSD_1.0
Gpsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,148,848 - 36,150,959 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,410,380 - 1,412,477 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,410,194 - 1,412,496 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPSM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,227,576 - 24,229,797 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,227,572 - 24,229,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2728,048,460 - 28,050,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPSM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,839,010 - 39,841,213 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,090,534 - 32,092,689 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpsm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,129,812 - 24,132,333 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,130,303 - 24,132,332 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpsm3
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:39
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000000510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat

Markers in Region
RH133069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,157,191 - 4,157,392 (-)MAPPERmRatBN7.2
Rnor_6.0204,356,838 - 4,357,038NCBIRnor6.0
Rnor_5.0206,436,194 - 6,436,394UniSTSRnor5.0
RGSC_v3.4204,259,952 - 4,260,152UniSTSRGSC3.4
Celera203,872,889 - 3,873,089UniSTS
RH 3.4 Map2052.92UniSTS
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 7 18 17 2 5
Low 1 43 50 41 1 41 6 9 74 18 39 6 6
Below cutoff 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000510   ⟹   ENSRNOP00000000510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,157,123 - 4,158,984 (-)Ensembl
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094807   ⟹   ENSRNOP00000097360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)Ensembl
RefSeq Acc Id: NM_001003974   ⟹   NP_001003974
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,161,730 - 4,163,591 (-)NCBI
mRatBN7.2204,157,123 - 4,158,984 (-)NCBI
Rnor_6.0204,355,246 - 4,357,107 (+)NCBI
Rnor_5.0206,434,602 - 6,436,463 (+)NCBI
RGSC_v3.4204,259,883 - 4,261,744 (-)RGD
Celera203,871,297 - 3,873,158 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001003974   ⟸   NM_001003974
- UniProtKB: Q6MG88 (UniProtKB/Swiss-Prot),   A6KTF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000510   ⟸   ENSRNOT00000000510
RefSeq Acc Id: ENSRNOP00000097360   ⟸   ENSRNOT00000094807
Protein Domains
GoLoco

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG88-F1-model_v2 AlphaFold Q6MG88 1-158 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701338
Promoter ID:EPDNEW_R11862
Type:initiation region
Name:Gpsm3_1
Description:G-protein signaling modulator 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,355,427 - 4,355,487EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303014 AgrOrtholog
BioCyc Gene G2FUF-4582 BioCyc
Ensembl Genes ENSRNOG00000000441 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055006745 UniProtKB/Swiss-Prot
  ENSRNOG00060007523 UniProtKB/Swiss-Prot
  ENSRNOG00065028084 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000510 ENTREZGENE
  ENSRNOT00000000510.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094807.1 UniProtKB/TrEMBL
  ENSRNOT00055011031 UniProtKB/Swiss-Prot
  ENSRNOT00060012397 UniProtKB/Swiss-Prot
  ENSRNOT00065048386 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7384543 IMAGE-MGC_LOAD
InterPro GoLoco_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPSM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:406163 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108946 IMAGE-MGC_LOAD
NCBI Gene 406163 ENTREZGENE
PANTHER G-PROTEIN-SIGNALING MODULATOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR47617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GoLoco UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpsm3 PhenoGen
PROSITE GOLOCO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000441 RatGTEx
  ENSRNOG00055006745 RatGTEx
  ENSRNOG00060007523 RatGTEx
  ENSRNOG00065028084 RatGTEx
SMART GoLoco UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AU97_RAT UniProtKB/TrEMBL
  A6KTF4 ENTREZGENE, UniProtKB/TrEMBL
  GPSM3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Gpsm3  G-protein signaling modulator 3  Gpsm3  G-protein signaling modulator 3 (AGS3-like, C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Gpsm3  G-protein signaling modulator 3 (AGS3-like, C. elegans)  Gpsm3  G-protein signalling modulator 3 (AGS3-like, C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-04-05 Gpsm3  proteolipid protein (myelin) 1  Gpsm3_pend  G-protein signalling modulator 3 (AGS3-like, C. elegans)  Nomenclature status set to APPROVED 1299863 APPROVED
2005-01-04 Gpsm3  G-protein signalling modulator 3 (AGS3-like, C. elegans)  G18  G18 protein  Symbol and Name updated 1299863 PENDING