Resp18 (regulated endocrine specific protein 18) - Rat Genome Database

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Gene: Resp18 (regulated endocrine specific protein 18) Ictidomys tridecemlineatus
Analyze
Symbol: Resp18
Name: regulated endocrine specific protein 18
RGD ID: 12729588
Description: INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); autosomal recessive distal hereditary motor neuronopathy 5 (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN perikaryon (ortholog); rough endoplasmic reticulum lumen (ortholog); secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulated endocrine specific protein 18, transcript variant X1; regulated endocrine specific protein 18, transcript variant X2; regulated endocrine-specific protein 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,388,977 - 175,394,900 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365691,731,756 - 1,737,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Resp18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,388,977 - 175,394,900 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365691,731,756 - 1,737,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RESP18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,327,407 - 219,336,656 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,327,407 - 219,333,177 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,192,129 - 220,197,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,900,375 - 219,906,143 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,962,131 - 213,967,896 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2212,045,173 - 212,050,937 (-)NCBIHuRef
CHM1_12220,197,974 - 220,203,727 (-)NCBICHM1_1
T2T-CHM13v2.02219,812,175 - 219,821,424 (-)NCBIT2T-CHM13v2.0
Resp18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,248,841 - 75,255,059 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,248,843 - 75,255,059 (-)EnsemblGRCm39 Ensembl
GRCm38175,272,197 - 75,278,415 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,272,199 - 75,278,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,268,777 - 75,274,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,155,350 - 75,161,528 (-)NCBIMGSCv36mm8
Celera175,763,036 - 75,769,217 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.65NCBI
Resp18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,213,844 - 84,220,186 (-)NCBIGRCr8
mRatBN7.2976,765,179 - 76,771,824 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,764,590 - 76,778,722 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,209,715 - 85,216,056 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,338,603 - 90,344,944 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,724,817 - 88,731,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,470,794 - 82,477,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,470,759 - 82,477,181 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,240,055 - 82,246,695 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,551,809 - 74,558,151 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,698,790 - 74,705,133 (-)NCBI
Celera974,335,568 - 74,341,910 (-)NCBICelera
Cytogenetic Map9q33NCBI
Resp18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545314,106,430 - 14,111,920 (+)NCBIChiLan1.0ChiLan1.0
RESP18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,957,498 - 121,964,196 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,972,446 - 121,983,317 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,584,632 - 106,590,704 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,175,198 - 225,180,916 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,175,221 - 225,180,916 (-)Ensemblpanpan1.1panPan2
RESP18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115121,364,165 - 121,371,430 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,397,624 - 134,404,845 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RESP18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,230,482 - 105,235,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,230,560 - 105,235,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,162,499 - 94,167,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Resp18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248235,688,508 - 5,693,522 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005330560   ⟹   XP_005330617
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,388,977 - 175,394,900 (-)NCBI
SpeTri2.0NW_0049365691,731,756 - 1,737,679 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330617 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010355.2
GenBank Protein KAG3275322 (Get FASTA)   NCBI Sequence Viewer  
  KAG3275323 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005330617   ⟸   XM_005330560
- UniProtKB: I3MHI7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
RESP18


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011538 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011537.3 UniProtKB/TrEMBL
InterPro RESP18 UniProtKB/TrEMBL
  RESP18_dom UniProtKB/TrEMBL
NCBI Gene Resp18 ENTREZGENE
PANTHER PTHR17314 UniProtKB/TrEMBL
  REGULATED ENDOCRINE-SPECIFIC PROTEIN 18 UniProtKB/TrEMBL
Pfam RESP18 UniProtKB/TrEMBL
SMART RESP18 UniProtKB/TrEMBL
UniProt I3MHI7 ENTREZGENE, UniProtKB/TrEMBL