LOC101969421 (cytochrome P450 1A2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC101969421 (cytochrome P450 1A2) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101969421 (Ensembl: CYP1A2)
Name: cytochrome P450 1A2
RGD ID: 12721380
Description: ENCODES a protein that exhibits monooxygenase activity (ortholog); nitrite reductase (NO-forming) activity (ortholog); oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen (ortholog); INVOLVED IN cellular respiration (ortholog); cellular response to cadmium ion (ortholog); cellular response to copper ion (ortholog); PARTICIPATES IN axitinib pharmacokinetics pathway; caffeine pharmacokinetics pathway; clomipramine pharmacokinetics pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); Atrophy (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,856,553 - 115,861,413 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,703,792 - 33,709,484 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,704,616 - 33,709,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101969421
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,856,553 - 115,861,413 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,703,792 - 33,709,484 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,704,616 - 33,709,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,748,845 - 74,756,607 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,748,845 - 74,756,607 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,041,186 - 75,048,948 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,828,237 - 72,835,994 (+)NCBINCBI36Build 36hg18NCBI36
Build 341572,828,236 - 72,835,994NCBI
Celera1551,991,217 - 51,998,975 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,838,984 - 51,846,743 (+)NCBIHuRef
CHM1_11575,159,686 - 75,167,443 (+)NCBICHM1_1
T2T-CHM13v2.01572,618,749 - 72,626,513 (+)NCBIT2T-CHM13v2.0
Cyp1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,584,220 - 57,590,938 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,584,220 - 57,590,986 (-)EnsemblGRCm39 Ensembl
GRCm38957,676,937 - 57,683,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,676,937 - 57,683,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,524,744 - 57,531,462 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,475,074 - 57,481,792 (-)NCBIMGSCv36mm8
Celera954,913,185 - 54,919,903 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.3NCBI
Cyp1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,971,261 - 66,978,149 (-)NCBIGRCr8
mRatBN7.2858,075,367 - 58,082,255 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,075,367 - 58,082,312 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,608,316 - 63,615,227 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,885,882 - 61,892,795 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,750,429 - 59,757,344 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,451,360 - 62,458,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,451,329 - 62,458,301 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,228,271 - 62,235,203 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,439,062 - 61,447,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1861,458,143 - 61,464,586 (-)NCBI
Celera857,541,217 - 57,547,956 (-)NCBICelera
Cytogenetic Map8q24NCBI
LOC102010322
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,165,106 - 3,171,942 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,165,107 - 3,171,894 (-)NCBIChiLan1.0ChiLan1.0
CYP1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,978,105 - 63,985,853 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,142,637 - 68,148,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,692,877 - 53,699,279 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,311,720 - 73,319,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,311,720 - 73,319,447 (+)Ensemblpanpan1.1panPan2
CYP1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,818,400 - 37,824,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,799,140 - 37,824,135 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,751,388 - 37,757,086 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,023,809 - 38,029,593 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,023,809 - 38,029,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,976,275 - 37,981,991 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,002,364 - 38,008,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,258,389 - 38,264,108 (+)NCBIUU_Cfam_GSD_1.0
CYP1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,779,475 - 58,786,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,779,529 - 58,786,155 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,468,129 - 63,474,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYP1A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1268,727,996 - 8,733,254 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,898,379 - 132,904,792 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021728400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000029961   ⟹   ENSSTOP00000021252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647133,703,792 - 33,709,484 (+)Ensembl
RefSeq Acc Id: XM_021728400   ⟹   XP_021584075
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640115,856,553 - 115,861,413 (+)NCBI
SpeTri2.0NW_00493647133,704,616 - 33,709,455 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021584075 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021252.2
GenBank Protein KAG3262289 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021584075   ⟸   XM_021728400
- UniProtKB: I3NA55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000021252   ⟸   ENSSTOT00000029961


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023499 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029961.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_E_grp-I_CYP1 UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene LOC101969421 ENTREZGENE
PANTHER CYTOCHROME P450 1A2 UniProtKB/TrEMBL
  STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  EP450ICYP1A UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt I3NA55 ENTREZGENE, UniProtKB/TrEMBL