Atf1 (activating transcription factor 1)

Gene: Atf1 (activating transcription factor 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Atf1

Name:

activating transcription factor 1

RGD ID:

12718329

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); protein-containing complex binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of DNA replication (ortholog); positive regulation of neuron projection development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); polycystic kidney disease (ortholog); polycystic ovary syndrome (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog); transcription regulator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

activating transcription factor 1, transcript variant X1; activating transcription factor 1, transcript variant X2; activating transcription factor 1, transcript variant X3; activating transcription factor 1, transcript variant X4; cyclic AMP-dependent transcription factor ATF-1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,379,797 - 8,426,186 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,379,802 - 8,426,574 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

polycystic kidney disease (ISO)

polycystic ovary syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cAMP-mediated signaling (IEA)

positive regulation of DNA replication (ISO)

positive regulation of neuron projection development (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

protein-containing complex assembly (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

response to cobalt ion (ISO)

response to inorganic substance (IEA)

response to organic cyclic compound (ISO)

response to purine-containing compound (IEA)

Cellular Component

ATF1-ATF4 transcription factor complex (IEA)

ATF4-CREB1 transcription factor complex (IEA)

nucleoplasm (IEA)

nucleus (IEA)

RNA polymerase II transcription regulator complex (IEA,ISO)

transcription regulator complex (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA,ISO)

identical protein binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Atf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,379,797 - 8,426,186 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,379,802 - 8,426,574 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	50,763,459 - 50,821,162 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	50,763,710 - 50,821,162 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	51,157,884 - 51,214,945 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	49,444,086 - 49,501,174 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	49,444,127 - 49,500,327	NCBI
Celera	12	49,959,051 - 50,016,446 (+)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	48,190,680 - 48,247,722 (+)	NCBI		HuRef
CHM1_1	12	51,124,299 - 51,181,471 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	50,726,620 - 50,784,323 (+)	NCBI		T2T-CHM13v2.0

Atf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	100,125,729 - 100,159,129 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	100,125,700 - 100,159,125 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	100,227,859 - 100,261,248 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	100,227,819 - 100,261,244 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	100,058,290 - 100,091,679 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	100,055,893 - 100,089,282 (+)	NCBI		MGSCv36	mm8
Celera	15	102,384,029 - 102,412,594 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.22	NCBI

Atf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,240,774 - 133,283,488 (+)	NCBI		GRCr8
mRatBN7.2	7	131,361,962 - 131,404,677 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,362,450 - 131,404,670 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	133,164,873 - 133,207,777 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,390,454 - 135,433,359 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,302,985 - 135,345,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	141,882,261 - 141,924,790 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	141,882,251 - 141,924,788 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	139,692,651 - 139,735,616 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	138,971,063 - 139,014,690 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	139,039,700 - 139,089,879 (+)	NCBI
Celera	7	127,839,929 - 127,882,623 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Atf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	1,257,944 - 1,299,519 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955547	1,263,288 - 1,299,525 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	43,363,059 - 43,421,056 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	43,359,823 - 43,420,975 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	37,930,383 - 37,988,476 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	38,832,318 - 38,888,157 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	38,832,318 - 38,888,204 (-)	Ensembl	panpan1.1		panPan2

ATF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	3,904,635 - 3,993,387 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	3,877,355 - 3,992,904 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	42,264,552 - 42,352,571 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	3,965,558 - 4,040,154 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	3,965,553 - 4,040,102 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	3,918,858 - 4,006,920 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	3,906,679 - 3,994,477 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	42,659,869 - 42,734,156 (+)	NCBI		UU_Cfam_GSD_1.0

ATF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	16,618,643 - 16,681,380 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	16,619,130 - 16,681,391 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	17,197,022 - 17,198,589 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	46,992,068 - 47,049,142 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	47,003,621 - 47,049,381 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	199,054,422 - 199,112,143 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	1,527,620 - 1,596,066 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	1,529,082 - 1,592,932 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010741 ⟹ ENSSTOP00000009640

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	8,379,797 - 8,426,186 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000039036 ⟹ ENSSTOP00000028909

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	8,379,849 - 8,426,186 (+)	Ensembl

RefSeq Acc Id:

XM_005324945 ⟹ XP_005325002

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,030 (-)	NCBI
SpeTri2.0	NW_004936512	8,379,802 - 8,424,949 (+)	NCBI

Sequence:

show sequence

CACCCCCCACGCACACTTGCACTGAGTTTTGCCCCCCTCCCCTGCCCCCTGCTTGGTGTAGATC
ATGCCGCCAGTGGCGGCCCTGACTGCCGAGAAACGGTAGCTTAGGACAATTGGCTGTTGAGTGA
CACTGATTCTCCCTGCCCCGCCTGACCCTGAGAAAGAAGCACGTCCCTCGCCTCGAAAAGGGGT
GGGGAAGTGGGTAGTGAATTCGGATCCACTTGGGAGGGGGGAGTGAAAGTTCCCGCCCCGGACT
GCAGCGAGGCGGCAGCCACAGTTGATTATGGAAGATTCCCACAAGAGTAACACTTCAGAGACTA
CACCTCAACCTGGTTCAGCAGTTCAGGGAGCTCATATTTCTCATATTGCTCAACAGGTATCATC
TTTATCGGAAAGTGAGGAGTCTCAGGACTCATCTGACAGCATAGGCTCCTCACAGAAAGCTCAC
GGGATCCTAGCACGGCGCCCATCTTACAGAAAAATTTTGAAAGACCTCTCTTCAGAAGATACAC
GAGGCAGAAAAGGAGACGGAGAAAACCCTGGAGTTTCTGCTGTTACTTCTATGTCTGTTCCAAC
TCCGATCTATCAGACTAGCAGCGGACAGTATATTGCCATTGCCCCAAATGGAGCCTTACAGTTG
GCCAGTCCAGGCACCGATGGAGTACAGGGACTTCAGACATTAACCATGACAAATTCAGGCAGTA
CTCAGCAAGGCACAATCCTACAGTATGCACAGACCTCTGATGGACAACAAATACTTGTGCCCAG
CAACCAGGTGGTTGTACAAACTGCATCAGGAGATATGCAGACATATCAGATCCGCACCACACCT
TCGGCTACTTCACTGCCACAGACTGTGGTGATGACATCCCCTGTGACTCTAACATCTCAGACAG
CTAAGACAGATGACCCCCAATTAAAAAGAGAAATAAGGTTGATGAAAAACAGAGAAGCTGCTCG
AGAATGTCGCAGAAAGAAGAAAGAATACGTGAAATGCCTGGAAAATCGAGTTGCAGTCTTGGAA
AATCAAAATAAAACTCTAATAGAAGAGTTAAAAACTTTGAAGGATCTTTACTCTCATAAAAGTG
TTTGATTCGAAAGAAAGTATTTTTTGTGGACTTACCTAAAAAATAGATGGATTTCTTTTCTTTT
TTTAGTGGAGTTTTATAAATTAAAAGGTCAAAAGTAAAGCTAGTTTTTATGTAGGCTTTTGCAA
CTCAAAGATAAATGTCTTATGCAAGAGATATGGTGACAGAGGAAAGTGGAAAATGACCTCAAGG
AAGCTACTGGCACAACTGGAAGCTCTGTAAAAATTAAACATACTCAAGCAAGAAATGAACTTTC
ATCAATTTGAATTTTCTAAATAATAATAGTTGTCAATCCAAAAATGACAGATAAAATGGATTTG
GTAAATTGAATTTTAGAAAATAAGTCAATTTACCCTATAGGTTTGCATTTCTTACCGTTTCCTG
AAATTTACCTTTTTCAGTTGTGTATTTCATTTCTACCAGTAAATTCTAAATTACAAATATAAAA

hide sequence

RefSeq Acc Id:

XM_013358518 ⟹ XP_013213972

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,033 (-)	NCBI
SpeTri2.0	NW_004936512	8,379,808 - 8,426,571 (+)	NCBI

Sequence:

show sequence

CCACGCACACTTGCACTGAGTTTTGCCCCCCTCCCCTGCCCCCTGCTTGGTGTAGATCATGCCG
CCAGTGGCGGCCCTGACTGCCGAGAAACGGTAGCTTAGGACAATTGGCTGTTGAGTGACACTGA
TTCTCCCTGCCCCGCCTGACCCTGAGAAAGAAGCACGTCCCTCGCCTCGAAAAGGGGTGGGGAA
GTGGGTAGTGAATTCGGATCCACTTGGGAGGGGGGAGTGAAAGTTCCCGCCCCGGACTGCAGCG
AGGCGGCAGCCACAGTTGATTATGGAAGATTCCCACAAGAGTAACACTTCAGAGACTACACCTC
AACCTGGTTCAGCAGTTCAGGGAGCTCATATTTCTCATATTGCTCAACAGATGTCATTAAGAGG
ATCTTCGCCAGTGACAATTGTACCTCTTCCTGGAAAGCAAGTACAGGTTCAGGGGGTCATCCAG
GCAGCTCATTCTTCTGTAATTCACCCACCACATGTGCAAACGGTATCATCTTTATCGGAAAGTG
AGGAGTCTCAGGACTCATCTGACAGCATAGGCTCCTCACAGAAAGCTCACGGGATCCTAGCACG
GCGCCCATCTTACAGAAAAATTTTGAAAGACCTCTCTTCAGAAGATACACGAGGCAGAAAAGGA
GACGGAGAAAACCCTGGAGTTTCTGCTGTTACTTCTATGTCTGTTCCAACTCCGATCTATCAGA
CTAGCAGCGGACAGTATATTGCCATTGCCCCAAATGGAGCCTTACAGTTGGCCAGTCCAGGCAC
CGATGGAGTACAGGGACTTCAGACATTAACCATGACAAATTCAGGCAGTACTCAGCAAGGCACA
ATCCTACAGTATGCACAGACCTCTGATGGACAACAAATACTTGTGCCCAGCAACCAGGTGGTTG
TACAAACTGCATCAGGAGATATGCAGACATATCAGATCCGCACCACACCTTCGGCTACTTCACT
GCCACAGACTGTGGTGATGACATCCCCTGTGACTCTAACATCTCAGACAGCTAAGACAGATGAC
CCCCAATTAAAAAGAGAAATAAGGTTGATGAAAAACAGAGAAGCTGCTCGAGAATGTCGCAGAA
AGAAGAAAGAATACGTGAAATGCCTGGAAAATCGAGTTGCAGTCTTGGAAAATCAAAATAAAAC
TCTAATAGAAGAGTTAAAAACTTTGAAGGATCTTTACTCTCATAAAAGTGTTTGATTCGAAAGA
AAGTATTTTTTGTGGACTTACCTAAAAAATAGATGGATTTCTTTTCTTTTTTTAGTGGAGTTTT
ATAAATTAAAAGGTCAAAAGTAAAGCTAGTTTTTATGTAGGCTTTTGCAACTCAAAGATAAATG
TCTTATGCAAGAGATATGGTGACAGAGGAAAGTGGAAAATGACCTCAAGGAAGCTACTGGCACA
ACTGGAAGCTCTGTAAAAATTAAACATACTCAAGCAAGAAATGAACTTTCATCAATTTGAATTT
TCTAAATAATAATAGTTGTCAATCCAAAAATGACAGATAAAATGGATTTGGTAAATTGAATTTT
AGAAAATAAGTCAATTTACCCTATAGGTTTGCATTTCTTACCGTTTCCTGAAATTTACCTTTTT
CAGTTGTGTATTTCATTTCTACCAGTAAATTCTAAATTACAAATATAAAAGAAAACCTGATTAA
TTTCTAAATATATAAATTATGTGTTCTGATTATGTAAATGTGTTCTATTGTCAAGTCTTTTAAA
TGGATTTTTAAGTTTGTTTGTTGGACTTGAGAGGGTGTTTTGAGACTGGGTTAACTATTTTTAA
GGGCTTGTCCTAAAAAGCATCTAAGGTACATGAATGGAATATGGTAATTTTGTAACATTTTTAT
CAGAATGGAAATGGAACTATTTAAAAGTTTGATACTTTTAAATATTTGTTTTTTGGTTACTCTG
GTAAGGGAGATTTTTTTTTAAACAAATGTATAATAAATTGGTTTTTTGATTCTGTATCCTATAT
GCAGTTGAATATCCATTAATCTGTTGTGCTTTAATAGAATGAAATGTTTACAGGCCCTTAAAAT
ACTATTTTTTAAAAACCTAAAGATGCATACCAAAGTTTTTCCAAGATTTTATAATCAATTTAAT
GTAAGGTTTATCAGGTTCTAAAATAGTAAAAGTTTTTAAGGCAATTTTATGTTAGAGACTATTT
GTAATATGTAGCAAATGGTACCTTTATAAGAAGAGTGACTGCCGATATATTTTTATAGCTAATC
TTTATAAATTTTAATGTTGAGTTTTTAATGATTATTTTAAATGTTTATATAGTTTAGTTAAAAC
TTGCATCTCAAAGTATCATTTTTATATTATGGGAAGTAAAGTTTTCAGATTGGCTAATATTTAA
ATTTTAGGTTTTATATGCAGTTTATCTAAAGTTCAAAATACTGTCATTACACCAATGTTTAACC
TCTGTACCCTAATTTGTGTACACTTTGAAACTGTACTGCACAAAACTATTGTGTGCTTCTTTTA
CTATGCTTCATATTGTTGATGAAATTAAAGGATATTTGATAAAATCAGGTTTGTTGAATGTAAA
ATATAATGCTTGATATTCAAATGATAACCTTGCTGATAAACTATTCTGTTAATCATACTAATTA
TACTGCTTTTCTAGTTTCAAAGTCAGGATACATTTAACAGTTTTAGTCTATTCAACCTGTTTTA
AAGGGGAATCTATTTTTTTTTTTTTGACTCAGAATCAGTTATAATAAACTAAACTAAAATTTCT
GCTCTATGTGTTTAAGACATTGTTAAGGAGTCTATGATTTAGAAATCTCTACCTGACAAATTTG
TGATTGGTCCTCCTAATGAAAATTTTCATTAAAAGGATCTTTAAATGGGCTCCACTGACTTGCC
AAGAGTTTATGAAAAGGGGTTACTTACATCATATTTTACCTTGTGTAAAGCCAGATTCTCAAAC
CAGGGGCGCATTAGGCTTCAATTATGAATAGGTAGAGTCACTGAGTTATGTAAAAAGTGTTTTA
ACAGATAGTATACTAAGTAGATGTTATGTTTGACTATAACAGTCTAGTTCTTGATGCCTTTACA
GCTAGATACCTGCAAATATTTGTAAATTCTTTGCTGCCTGAAGACTTCTGATGTCAGGCCTTGC
TCACTAGACCCAATTACTTAGTCCAACAATACATAATAGGCCTGGCCATGCCACTGATGGTAAT
GTGAATGCATACAAATTATTTTCCTGTTTGTCTAATTTAAAGCAATGTGGAGCTTATCGAGATT
TTAATAAA

hide sequence

RefSeq Acc Id:

XM_013358520 ⟹ XP_013213974

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,756,797 (-)	NCBI
SpeTri2.0	NW_004936512	8,407,950 - 8,426,574 (+)	NCBI

Sequence:

show sequence

AAAAATTTTGAAAGACCTCTCTTCAGAAGATACACGAGGCAGAAAAGGAGACGGAGAAAACCCT
GGAGTTTCTGCTGTTACTTCTATGTCTGTTCCAACTCCGATCTATCAGACTAGCAGCGGACAGT
ATAAATTTTCCTGGCAAGTACTCTACCTCTGAGCTATACCCCTAGCCCAAAACAAGTTGCCATT
GCCCCAAATGGAGCCTTACAGTTGGCCAGTCCAGGCACCGATGGAGTACAGGGACTTCAGACAT
TAACCATGACAAATTCAGGCAGTACTCAGCAAGGCACAATCCTACAGTATGCACAGACCTCTGA
TGGACAACAAATACTTGTGCCCAGCAACCAGGTGGTTGTACAAACTGCATCAGGAGATATGCAG
ACATATCAGATCCGCACCACACCTTCGGCTACTTCACTGCCACAGACTGTGGTGATGACATCCC
CTGTGACTCTAACATCTCAGACAGCTAAGACAGATGACCCCCAATTAAAAAGAGAAATAAGGTT
GATGAAAAACAGAGAAGCTGCTCGAGAATGTCGCAGAAAGAAGAAAGAATACGTGAAATGCCTG
GAAAATCGAGTTGCAGTCTTGGAAAATCAAAATAAAACTCTAATAGAAGAGTTAAAAACTTTGA
AGGATCTTTACTCTCATAAAAGTGTTTGATTCGAAAGAAAGTATTTTTTGTGGACTTACCTAAA
AAATAGATGGATTTCTTTTCTTTTTTTAGTGGAGTTTTATAAATTAAAAGGTCAAAAGTAAAGC
TAGTTTTTATGTAGGCTTTTGCAACTCAAAGATAAATGTCTTATGCAAGAGATATGGTGACAGA
GGAAAGTGGAAAATGACCTCAAGGAAGCTACTGGCACAACTGGAAGCTCTGTAAAAATTAAACA
TACTCAAGCAAGAAATGAACTTTCATCAATTTGAATTTTCTAAATAATAATAGTTGTCAATCCA
AAAATGACAGATAAAATGGATTTGGTAAATTGAATTTTAGAAAATAAGTCAATTTACCCTATAG
GTTTGCATTTCTTACCGTTTCCTGAAATTTACCTTTTTCAGTTGTGTATTTCATTTCTACCAGT
AAATTCTAAATTACAAATATAAAAGAAAACCTGATTAATTTCTAAATATATAAATTATGTGTTC
TGATTATGTAAATGTGTTCTATTGTCAAGTCTTTTAAATGGATTTTTAAGTTTGTTTGTTGGAC
TTGAGAGGGTGTTTTGAGACTGGGTTAACTATTTTTAAGGGCTTGTCCTAAAAAGCATCTAAGG
TACATGAATGGAATATGGTAATTTTGTAACATTTTTATCAGAATGGAAATGGAACTATTTAAAA
GTTTGATACTTTTAAATATTTGTTTTTTGGTTACTCTGGTAAGGGAGATTTTTTTTTAAACAAA
TGTATAATAAATTGGTTTTTTGATTCTGTATCCTATATGCAGTTGAATATCCATTAATCTGTTG
TGCTTTAATAGAATGAAATGTTTACAGGCCCTTAAAATACTATTTTTTAAAAACCTAAAGATGC
ATACCAAAGTTTTTCCAAGATTTTATAATCAATTTAATGTAAGGTTTATCAGGTTCTAAAATAG
TAAAAGTTTTTAAGGCAATTTTATGTTAGAGACTATTTGTAATATGTAGCAAATGGTACCTTTA
TAAGAAGAGTGACTGCCGATATATTTTTATAGCTAATCTTTATAAATTTTAATGTTGAGTTTTT
AATGATTATTTTAAATGTTTATATAGTTTAGTTAAAACTTGCATCTCAAAGTATCATTTTTATA
TTATGGGAAGTAAAGTTTTCAGATTGGCTAATATTTAAATTTTAGGTTTTATATGCAGTTTATC
TAAAGTTCAAAATACTGTCATTACACCAATGTTTAACCTCTGTACCCTAATTTGTGTACACTTT
GAAACTGTACTGCACAAAACTATTGTGTGCTTCTTTTACTATGCTTCATATTGTTGATGAAATT
AAAGGATATTTGATAAAATCAGGTTTGTTGAATGTAAAATATAATGCTTGATATTCAAATGATA
ACCTTGCTGATAAACTATTCTGTTAATCATACTAATTATACTGCTTTTCTAGTTTCAAAGTCAG
GATACATTTAACAGTTTTAGTCTATTCAACCTGTTTTAAAGGGGAATCTATTTTTTTTTTTTTG
ACTCAGAATCAGTTATAATAAACTAAACTAAAATTTCTGCTCTATGTGTTTAAGACATTGTTAA
GGAGTCTATGATTTAGAAATCTCTACCTGACAAATTTGTGATTGGTCCTCCTAATGAAAATTTT
CATTAAAAGGATCTTTAAATGGGCTCCACTGACTTGCCAAGAGTTTATGAAAAGGGGTTACTTA
CATCATATTTTACCTTGTGTAAAGCCAGATTCTCAAACCAGGGGCGCATTAGGCTTCAATTATG
AATAGGTAGAGTCACTGAGTTATGTAAAAAGTGTTTTAACAGATAGTATACTAAGTAGATGTTA
TGTTTGACTATAACAGTCTAGTTCTTGATGCCTTTACAGCTAGATACCTGCAAATATTTGTAAA
TTCTTTGCTGCCTGAAGACTTCTGATGTCAGGCCTTGCTCACTAGACCCAATTACTTAGTCCAA
CAATACATAATAGGCCTGGCCATGCCACTGATGGTAATGTGAATGCATACAAATTATTTTCCTG
TTTGTCTAATTTAAAGCAATGTGGAGCTTATCGAGATTTTAATAAAAAT

hide sequence

RefSeq Acc Id:

XM_040280641 ⟹ XP_040136575

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,464 (-)	NCBI

RefSeq Acc Id:

XM_040280642 ⟹ XP_040136576

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,934 (-)	NCBI

RefSeq Acc Id:

XM_040280643 ⟹ XP_040136577

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,450 (-)	NCBI

RefSeq Acc Id:

XM_040280644 ⟹ XP_040136578

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,785,923 (-)	NCBI

RefSeq Acc Id:

XM_040280645 ⟹ XP_040136579

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,738,987 - 64,763,689 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005325002	(Get FASTA)	NCBI Sequence Viewer
	XP_013213972	(Get FASTA)	NCBI Sequence Viewer
	XP_013213974	(Get FASTA)	NCBI Sequence Viewer
	XP_040136575	(Get FASTA)	NCBI Sequence Viewer
	XP_040136576	(Get FASTA)	NCBI Sequence Viewer
	XP_040136577	(Get FASTA)	NCBI Sequence Viewer
	XP_040136578	(Get FASTA)	NCBI Sequence Viewer
	XP_040136579	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009640.3
	ENSSTOP00000028909.1
GenBank Protein	KAG3291970	(Get FASTA)	NCBI Sequence Viewer
	KAG3291971	(Get FASTA)	NCBI Sequence Viewer
	KAG3291972	(Get FASTA)	NCBI Sequence Viewer
	KAG3291973	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005325002 ⟸ XM_005324945
- Peptide Label:	isoform X4
- UniProtKB:	I3MG15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDSHKSNTSETTPQPGSAVQGAHISHIAQQVSSLSESEESQDSSDSIGSSQKAHGILARRPSY RKILKDLSSEDTRGRKGDGENPGVSAVTSMSVPTPIYQTSSGQYIAIAPNGALQLASPGTDGVQ GLQTLTMTNSGSTQQGTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPSATSLPQTV VMTSPVTLTSQTAKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE LKTLKDLYSHKSV hide sequence

RefSeq Acc Id:

XP_013213972 ⟸ XM_013358518

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEDSHKSNTSETTPQPGSAVQGAHISHIAQQMSLRGSSPVTIVPLPGKQVQVQGVIQAAHSSVI
HPPHVQTVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSSEDTRGRKGDGENPGV
SAVTSMSVPTPIYQTSSGQYIAIAPNGALQLASPGTDGVQGLQTLTMTNSGSTQQGTILQYAQT
SDGQQILVPSNQVVVQTASGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTAKTDDPQLKREI
RLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV

hide sequence

RefSeq Acc Id:	XP_013213974 ⟸ XM_013358520
- Peptide Label:	isoform X5
- Sequence:	show sequence MTNSGSTQQGTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPSATSLPQTVVMTSPV TLTSQTAKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKD LYSHKSV hide sequence

RefSeq Acc Id:	XP_040136576 ⟸ XM_040280642
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040136578 ⟸ XM_040280644
- Peptide Label:	isoform X4
- UniProtKB:	I3MG15 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040136575 ⟸ XM_040280641
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040136577 ⟸ XM_040280643
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040136579 ⟸ XM_040280645
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSSTOP00000028909 ⟸ ENSSTOT00000039036

RefSeq Acc Id:

ENSSTOP00000009640 ⟸ ENSSTOT00000010741

Protein Domains

bZIP KID

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010742	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010741.3	UniProtKB/TrEMBL
	ENSSTOT00000039036.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/TrEMBL
InterPro	bZIP	UniProtKB/TrEMBL
	bZIP_sf	UniProtKB/TrEMBL
	Coactivator_CBP_pKID	UniProtKB/TrEMBL
	Leuzip_CREB	UniProtKB/TrEMBL
NCBI Gene	Atf1	ENTREZGENE
PANTHER	PTHR45879	UniProtKB/TrEMBL
	PTHR45879:SF2	UniProtKB/TrEMBL
Pfam	bZIP_1	UniProtKB/TrEMBL
	pKID	UniProtKB/TrEMBL
PRINTS	LEUZIPPRCREB	UniProtKB/TrEMBL
PROSITE	BZIP	UniProtKB/TrEMBL
	BZIP_BASIC	UniProtKB/TrEMBL
	KID	UniProtKB/TrEMBL
SMART	BRLZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57959	UniProtKB/TrEMBL
UniProt	A0A287D5T6_ICTTR	UniProtKB/TrEMBL
	I3MG15	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD