Sv2a (synaptic vesicle glycoprotein 2A) - Rat Genome Database

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Gene: Sv2a (synaptic vesicle glycoprotein 2A) Ictidomys tridecemlineatus
Analyze
Symbol: Sv2a
Name: synaptic vesicle glycoprotein 2A
RGD ID: 12714765
Description: ENCODES a protein that exhibits protein kinase binding (inferred); transmembrane transporter activity (inferred); INVOLVED IN intracellular calcium ion homeostasis (ortholog); regulation of gamma-aminobutyric acid secretion (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,213,447 - 21,227,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580243,792 - 257,760 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580243,829 - 257,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Sv2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,213,447 - 21,227,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580243,792 - 257,760 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580243,829 - 257,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SV2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381149,903,318 - 149,917,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1149,903,318 - 149,917,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371149,874,870 - 149,889,396 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,141,859 - 148,156,054 (-)NCBINCBI36Build 36hg18NCBI36
Celera1122,990,840 - 123,005,404 (-)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,255,354 - 121,269,918 (-)NCBIHuRef
CHM1_11151,271,444 - 151,286,008 (-)NCBICHM1_1
T2T-CHM13v2.01149,027,459 - 149,041,985 (-)NCBIT2T-CHM13v2.0
Sv2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,088,543 - 96,102,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,088,467 - 96,102,837 (+)EnsemblGRCm39 Ensembl
GRCm38396,181,227 - 96,195,183 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,181,151 - 96,195,521 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,985,150 - 95,999,106 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,266,632 - 96,280,588 (+)NCBIMGSCv36mm8
Celera397,620,657 - 97,631,186 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.65NCBI
Sv2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,430,363 - 186,446,161 (+)NCBIGRCr8
mRatBN7.22183,741,489 - 183,757,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,741,547 - 183,756,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,405,136 - 191,420,924 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,209,456 - 189,225,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,037,670 - 184,053,458 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,321,100 - 198,336,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,321,142 - 198,336,913 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,808,165 - 217,823,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,989,187 - 191,000,859 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12190,948,188 - 190,963,566 (+)NCBI
Celera2176,272,713 - 176,284,621 (+)NCBICelera
Cytogenetic Map2q34NCBI
Sv2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413834,743 - 851,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955413834,743 - 849,176 (+)NCBIChiLan1.0ChiLan1.0
SV2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,921,893 - 99,936,495 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,676,850 - 99,691,458 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,247,429 - 125,262,041 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11128,904,140 - 128,918,829 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1128,904,151 - 128,918,829 (-)Ensemblpanpan1.1panPan2
SV2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,185,715 - 59,195,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,187,244 - 59,195,888 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,633,794 - 58,647,878 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,182,727 - 60,196,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,182,738 - 60,196,859 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,032,197 - 59,046,284 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,115,941 - 59,130,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,843,004 - 59,857,105 (-)NCBIUU_Cfam_GSD_1.0
SV2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,138,342 - 99,153,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,138,319 - 99,153,153 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24108,567,034 - 108,581,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SV2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603813,389,665 - 13,404,056 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sv2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,681,299 - 17,696,884 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,684,061 - 17,698,728 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006541   ⟹   ENSSTOP00000005849
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936580245,386 - 253,915 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039854   ⟹   ENSSTOP00000031815
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936580243,792 - 257,760 (-)Ensembl
RefSeq Acc Id: XM_005331143   ⟹   XP_005331200
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505821,214,858 - 21,227,353 (-)NCBI
SpeTri2.0NW_004936580243,829 - 257,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287502   ⟹   XP_040143436
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505821,213,447 - 21,223,563 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005331200 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143436 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005849.3
  ENSSTOP00000031815.1
GenBank Protein KAG3281443 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005331200   ⟸   XM_005331143
- UniProtKB: A0A287DE25 (UniProtKB/TrEMBL),   I3M843 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143436   ⟸   XM_040287502
- UniProtKB: A0A287DE25 (UniProtKB/TrEMBL),   I3M843 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000031815   ⟸   ENSSTOT00000039854
RefSeq Acc Id: ENSSTOP00000005849   ⟸   ENSSTOT00000006541
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006537 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006541.3 UniProtKB/TrEMBL
  ENSSTOT00000039854.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
  E3 ubiquitin-protein ligase SopA UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
  SV2 UniProtKB/TrEMBL
NCBI Gene Sv2a ENTREZGENE
PANTHER SYNAPTIC VESICLE GLYCOPROTEIN 2 UniProtKB/TrEMBL
  SYNAPTIC VESICLE GLYCOPROTEIN 2A UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
  Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_2 UniProtKB/TrEMBL
Superfamily-SCOP Pentapeptide repeat-like UniProtKB/TrEMBL
  SSF103473 UniProtKB/TrEMBL
UniProt A0A287DE25 ENTREZGENE, UniProtKB/TrEMBL
  I3M843 ENTREZGENE, UniProtKB/TrEMBL