Zfp57 (ZFP57 zinc finger protein) - Rat Genome Database

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Gene: Zfp57 (ZFP57 zinc finger protein) Ictidomys tridecemlineatus
Analyze
Symbol: Zfp57
Name: ZFP57 zinc finger protein
RGD ID: 12713894
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); double-stranded methylated DNA binding (ortholog); INVOLVED IN autosome genomic imprinting (ortholog); epigenetic programing of female pronucleus (ortholog); epigenetic programming in the zygotic pronuclei (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH diabetes mellitus (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 57 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367231,063,969 - 1,069,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
heterochromatin  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zfp57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367231,063,969 - 1,069,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,672,392 - 29,681,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,672,483 - 29,681,155 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,640,169 - 29,648,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,748,239 - 29,756,866 (-)NCBINCBI36Build 36hg18NCBI36
Celera631,246,246 - 31,251,015 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,447,209 - 29,452,012 (-)NCBIHuRef
CHM1_1629,642,261 - 29,647,014 (-)NCBICHM1_1
T2T-CHM13v2.0629,547,090 - 29,555,881 (-)NCBIT2T-CHM13v2.0
Zfp57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,307,060 - 37,326,196 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,312,055 - 37,321,527 (+)EnsemblGRCm39 Ensembl
GRCm381737,001,163 - 37,010,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,001,163 - 37,010,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,138,108 - 37,147,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,610,595 - 36,618,685 (+)NCBIMGSCv36mm8
Celera1740,424,834 - 40,434,322 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Zfp57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,526,565 - 1,546,480 (-)NCBIGRCr8
mRatBN7.2201,521,323 - 1,534,884 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,521,323 - 1,529,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,576,736 - 1,583,058 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,580,232 - 1,586,554 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,521,892 - 1,528,175 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,014,177 - 2,020,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,014,170 - 2,020,537 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,054,802 - 4,061,113 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,611,856 - 1,618,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,612,083 - 1,617,758 (-)NCBI
Celera202,231,911 - 2,238,222 (-)NCBICelera
Cytogenetic Map20p12NCBI
Zfp57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBIChiLan1.0ChiLan1.0
LOC100977775
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,293,093 - 44,296,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,254,065 - 40,264,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,476,459 - 29,485,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,134,263 - 30,143,045 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,134,263 - 30,143,045 (-)Ensemblpanpan1.1panPan2
ZFP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,267,358 - 26,269,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03526,575,720 - 26,581,501 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13526,230,410 - 26,236,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,291,343 - 26,297,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,761,408 - 27,767,190 (-)NCBIUU_Cfam_GSD_1.0
ZFP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,605,125 - 22,612,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,607,420 - 22,612,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,016,155 - 25,020,986 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,942,002 - 42,947,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,201,143 - 29,205,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,390,107 - 25,397,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040282245   ⟹   XP_040138179
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040138179 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3288937 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138179   ⟸   XM_040282245


Additional Information

Database Acc Id Source(s)
NCBI Gene Zfp57 ENTREZGENE