LOC101961565 (VPS10 domain-containing receptor SorCS3) - Rat Genome Database

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Gene: LOC101961565 (VPS10 domain-containing receptor SorCS3) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101961565 (Ensembl: SORCS3)
Name: VPS10 domain-containing receptor SorCS3 (Ensembl:sortilin related VPS10 domain containing receptor 3)
RGD ID: 12713312
Description: INVOLVED IN learning (ortholog); memory (ortholog); regulation of long-term synaptic depression (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sorcs3; sortilin related VPS10 domain containing receptor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721329,437,059 - 30,007,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366001,042,135 - 1,609,783 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366001,040,284 - 1,610,474 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101961565
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721329,437,059 - 30,007,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366001,042,135 - 1,609,783 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366001,040,284 - 1,610,474 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SORCS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810104,641,290 - 105,265,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10104,641,290 - 105,265,242 (+)EnsemblGRCh38hg38GRCh38
GRCh3710106,401,048 - 107,025,000 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610106,390,849 - 107,014,983 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410106,390,848 - 107,014,983NCBI
Celera10100,141,671 - 100,765,737 (+)NCBICelera
Cytogenetic Map10q25.1NCBI
HuRef10100,032,497 - 100,656,979 (+)NCBIHuRef
CHM1_110106,685,564 - 107,309,603 (+)NCBICHM1_1
T2T-CHM13v2.010105,529,365 - 106,155,464 (+)NCBIT2T-CHM13v2.0
Sorcs3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391948,194,464 - 48,793,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1948,194,464 - 48,793,944 (+)EnsemblGRCm39 Ensembl
GRCm381948,206,025 - 48,805,505 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1948,206,025 - 48,805,505 (+)EnsemblGRCm38mm10GRCm38
MGSCv371948,280,515 - 48,879,995 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361948,259,336 - 48,858,816 (+)NCBIMGSCv36mm8
Celera1949,156,016 - 49,565,154 (+)NCBICelera
Cytogenetic Map19D1NCBI
cM Map1941.32NCBI
Sorcs3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81257,040,442 - 257,675,259 (+)NCBIGRCr8
mRatBN7.21247,099,178 - 247,734,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1247,099,408 - 247,734,027 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1255,232,260 - 255,850,872 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01261,925,106 - 262,543,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01254,569,425 - 255,196,136 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01267,986,305 - 268,620,331 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1268,189,277 - 268,620,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01275,416,357 - 276,060,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41254,125,935 - 254,345,330 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11254,170,074 - 254,608,437 (+)NCBI
Celera1242,858,847 - 243,481,607 (+)NCBICelera
Cytogenetic Map1q55NCBI
Sorcs3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554855,475,942 - 5,884,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554855,474,081 - 6,048,912 (-)NCBIChiLan1.0ChiLan1.0
SORCS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28116,526,661 - 117,143,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110116,531,986 - 117,148,724 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010101,239,765 - 101,856,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110104,697,769 - 105,314,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10104,697,113 - 105,312,364 (+)Ensemblpanpan1.1panPan2
SORCS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12816,909,908 - 17,491,097 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2816,909,856 - 17,489,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2817,081,570 - 17,662,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02817,388,943 - 17,978,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2817,387,965 - 17,978,934 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12816,934,694 - 17,515,723 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02816,969,837 - 17,553,022 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02817,102,540 - 17,684,150 (+)NCBIUU_Cfam_GSD_1.0
SORCS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14115,587,821 - 116,198,106 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114115,587,176 - 116,202,433 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214125,749,549 - 126,181,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SORCS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1997,688,826 - 98,299,715 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl997,883,836 - 98,299,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604858,813,649 - 59,431,355 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sorcs3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248313,665,233 - 4,240,825 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248313,665,218 - 4,241,384 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000015567   ⟹   ENSSTOP00000013932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366001,042,135 - 1,609,783 (-)Ensembl
RefSeq Acc Id: XM_005333579   ⟹   XP_005333636
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721329,437,059 - 30,007,274 (-)NCBI
SpeTri2.0NW_0049366001,040,284 - 1,610,474 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013932.3
RefSeq Acc Id: XP_005333636   ⟸   XM_005333579
- UniProtKB: I3MPY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013932   ⟸   ENSSTOT00000015567
Protein Domains
PKD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015559 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015567.3 UniProtKB/TrEMBL
Gene3D-CATH 2.10.70.80 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.30.60.270 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  PKD_dom UniProtKB/TrEMBL
  PKD_dom_sf UniProtKB/TrEMBL
  Sortilin_C UniProtKB/TrEMBL
  Sortilin_N UniProtKB/TrEMBL
  VPS10 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Sorcs3 ENTREZGENE
PANTHER SORTILIN RELATED UniProtKB/TrEMBL
  VPS10 DOMAIN-CONTAINING RECEPTOR SORCS3 UniProtKB/TrEMBL
Pfam PKD UniProtKB/TrEMBL
  Sortilin-Vps10 UniProtKB/TrEMBL
  Sortilin_C UniProtKB/TrEMBL
PROSITE PKD UniProtKB/TrEMBL
SMART VPS10 UniProtKB/TrEMBL
Superfamily-SCOP Oligoxyloglucan reducing end-specific cellobiohydrolase UniProtKB/TrEMBL
  SSF49299 UniProtKB/TrEMBL
UniProt I3MPY6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101961565  VPS10 domain-containing receptor SorCS3  Sorcs3  sortilin related VPS10 domain containing receptor 3  Symbol and/or name change 5135510 APPROVED