Ryr2 (ryanodine receptor 2) - Rat Genome Database

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Pathways
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Gene: Ryr2 (ryanodine receptor 2) Ictidomys tridecemlineatus
Analyze
Symbol: Ryr2
Name: ryanodine receptor 2
RGD ID: 12711584
Description: ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); ryanodine-sensitive calcium-release channel activity (ortholog); scaffold protein binding (ortholog); INVOLVED IN calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN A band (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934439,237,258 - 39,734,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648415,403,819 - 15,824,441 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648415,402,488 - 15,825,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
arrhythmogenic right ventricular cardiomyopathy  (ISO)
arrhythmogenic right ventricular dysplasia 1  (ISO)
arrhythmogenic right ventricular dysplasia 9  (ISO)
autism spectrum disorder  (ISO)
Brugada syndrome  (ISO)
cardiac arrest  (ISO)
Cardiac Arrhythmias  (ISO)
Cardiac Conduction Defect  (ISO)
cardiomyopathy  (ISO)
catecholaminergic polymorphic ventricular tachycardia  (ISO)
catecholaminergic polymorphic ventricular tachycardia 1  (ISO)
catecholaminergic polymorphic ventricular tachycardia 2  (ISO)
Childhood Schizophrenia  (ISO)
congenital heart disease  (ISO)
congestive heart failure  (ISO)
coronary artery disease  (ISO)
Diabetic Cardiomyopathies  (ISO)
Diastolic Dysfunction  (ISO)
dilated cardiomyopathy  (ISO)
dilated cardiomyopathy 1AA  (ISO)
dilated cardiomyopathy 1B  (ISO)
Dilated Cardiomyopathy with Left Ventricular Noncompaction  (ISO)
Experimental Diabetes Mellitus  (ISO)
familial hypertrophic cardiomyopathy  (ISO)
Familial Sudden Death  (ISO)
Familial Ventricular Tachycardia  (ISO)
gastrointestinal stromal tumor  (ISO)
genetic disease  (ISO)
gestational diabetes  (ISO)
Heart Block  (ISO)
heart disease  (ISO)
Hereditary Leiomyomatosis and Renal Cell Cancer  (ISO)
hypertrophic cardiomyopathy  (ISO)
hypertrophic cardiomyopathy 1  (ISO)
hypertrophic cardiomyopathy 4  (ISO)
Infant Death  (ISO)
left ventricular noncompaction  (ISO)
long QT syndrome  (ISO)
long QT syndrome 1  (ISO)
malignant mesothelioma  (ISO)
Myocardial Ischemia  (ISO)
parathyroid carcinoma  (ISO)
Paroxysmal Ventricular Fibrillation  (ISO)
pre-eclampsia  (ISO)
pulmonary hypertension  (ISO)
Sudden Cardiac Death  (ISO)
Sudden Death  (ISO)
Syncope  (ISO)
Tachycardia  (ISO)
Ventricular Fibrillation  (ISO)
Ventricular Fibrillation, Paroxysmal Familial, 1  (ISO)
Ventricular Tachycardia  (ISO)
Wolff-Parkinson-White syndrome  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion transmembrane import into cytosol  (IEA,ISO)
calcium ion transmembrane transport  (IEA,ISO)
calcium ion transport  (IEA,ISO)
calcium ion transport into cytosol  (IEA)
calcium-mediated signaling  (IEA)
cardiac muscle contraction  (IEA)
cardiac muscle hypertrophy  (IEA,ISO)
cellular response to caffeine  (IEA,ISO)
cellular response to epinephrine stimulus  (IEA)
detection of calcium ion  (IEA)
embryonic heart tube morphogenesis  (IEA)
establishment of localization in cell  (IEA,ISO)
establishment of protein localization to endoplasmic reticulum  (IEA)
intracellular calcium ion homeostasis  (IEA)
left ventricular cardiac muscle tissue morphogenesis  (IEA,ISO)
manganese ion transmembrane transport  (ISO)
monoatomic ion transmembrane transport  (ISO)
negative regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of heart rate  (IEA,ISO)
positive regulation of sequestering of calcium ion  (IEA)
positive regulation of the force of heart contraction  (IEA)
Purkinje myocyte to ventricular cardiac muscle cell signaling  (IEA)
regulation of atrial cardiac muscle cell action potential  (IEA)
regulation of AV node cell action potential  (IEA)
regulation of cardiac muscle contraction  (IEA)
regulation of cardiac muscle contraction by calcium ion signaling  (IEA)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IEA)
regulation of cytosolic calcium ion concentration  (ISO)
regulation of heart rate  (IEA)
regulation of SA node cell action potential  (IEA)
regulation of ventricular cardiac muscle cell action potential  (IEA)
release of sequestered calcium ion into cytosol  (IEA)
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IEA,ISO)
response to caffeine  (IEA,ISO)
response to calcium ion  (ISO)
response to hypoxia  (IEA,ISO)
response to magnesium ion  (ISO)
response to muscle activity  (IEA)
response to muscle stretch  (IEA)
response to nutrient  (ISO)
response to redox state  (IEA)
response to xenobiotic stimulus  (ISO)
sarcoplasmic reticulum calcium ion transport  (ISO)
striated muscle contraction  (IEA)
type B pancreatic cell apoptotic process  (IEA)
ventricular cardiac muscle cell action potential  (IEA)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway   (ISO)
calcium/calmodulin dependent kinase 2 signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ryr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934439,237,258 - 39,734,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648415,403,819 - 15,824,441 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648415,402,488 - 15,825,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RYR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381237,042,184 - 237,833,988 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1237,042,184 - 237,833,988 (+)EnsemblGRCh38hg38GRCh38
GRCh371237,205,484 - 237,997,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361235,272,325 - 236,063,911 (+)NCBINCBI36Build 36hg18NCBI36
Build 341233,531,742 - 234,322,694NCBI
Celera1210,455,038 - 211,246,790 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1207,662,133 - 208,453,675 (+)NCBIHuRef
CHM1_11238,478,098 - 239,269,604 (+)NCBICHM1_1
T2T-CHM13v2.01236,453,199 - 237,245,297 (+)NCBIT2T-CHM13v2.0
Ryr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391311,567,985 - 12,121,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1311,567,988 - 12,121,831 (-)EnsemblGRCm39 Ensembl
GRCm381311,553,099 - 12,106,945 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1311,553,102 - 12,106,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv371311,645,370 - 12,199,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361311,608,677 - 12,160,499 (-)NCBIMGSCv36mm8
Celera1311,467,020 - 12,025,871 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map134.38NCBI
Ryr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81763,081,527 - 63,667,141 (+)NCBIGRCr8
mRatBN7.21758,389,925 - 58,975,641 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1758,389,925 - 58,975,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1761,577,482 - 62,170,893 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01765,580,613 - 66,173,955 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01759,734,794 - 60,328,300 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01765,533,998 - 65,955,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1765,535,403 - 65,955,606 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01767,285,205 - 67,704,766 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41768,959,042 - 69,544,816 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11769,519,966 - 69,552,036 (+)NCBI
Celera1761,573,393 - 61,976,022 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Ryr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554922,648,956 - 3,076,509 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554922,647,597 - 3,275,512 (-)NCBIChiLan1.0ChiLan1.0
RYR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,327,556 - 12,116,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1111,544,360 - 12,334,567 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,600,198 - 213,387,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11217,598,069 - 218,384,849 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1217,815,676 - 218,383,509 (+)Ensemblpanpan1.1panPan2
RYR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.142,371,868 - 2,908,132 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl42,373,114 - 2,907,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha42,419,733 - 3,146,551 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.042,390,864 - 3,118,926 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl42,391,241 - 3,118,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.142,386,589 - 3,119,270 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.042,522,518 - 3,249,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.042,743,722 - 3,470,663 (-)NCBIUU_Cfam_GSD_1.0
RYR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1453,652,485 - 54,192,063 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11453,652,140 - 54,406,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21457,571,491 - 58,014,914 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q22-q23NCBI
RYR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12574,169,024 - 74,951,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2574,389,122 - 74,953,451 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605576,267,928 - 77,050,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ryr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477512,956,042 - 13,419,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477512,954,653 - 13,650,449 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014730   ⟹   ENSSTOP00000013195
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648415,403,819 - 15,824,441 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039321   ⟹   ENSSTOP00000024029
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648415,403,819 - 15,824,441 (-)Ensembl
RefSeq Acc Id: XM_040278522   ⟹   XP_040134456
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934439,237,258 - 39,734,210 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134456 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013195.3
  ENSSTOP00000024029.1
GenBank Protein KAG3257803 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040134456   ⟸   XM_040278522
- UniProtKB: I3MNG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000024029   ⟸   ENSSTOT00000039321
RefSeq Acc Id: ENSSTOP00000013195   ⟸   ENSSTOT00000014730
Protein Domains
B30.2/SPRY   EF-hand   MIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014690 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014730.3 UniProtKB/TrEMBL
  ENSSTOT00000039321.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.10.490.160 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  IP3 receptor type 1 binding core, RIH domain UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Ins145_P3_rcpt UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  RIH_assoc-dom UniProtKB/TrEMBL
  RIH_dom UniProtKB/TrEMBL
  Ryan_recept UniProtKB/TrEMBL
  Ryanodine_IP3_receptor UniProtKB/TrEMBL
  Ryanodine_rcpt UniProtKB/TrEMBL
  Ryanrecept_TM4-6 UniProtKB/TrEMBL
  RYDR_Jsol UniProtKB/TrEMBL
  RyR/IP3R_RIH_dom_sf UniProtKB/TrEMBL
  SPRY1_RyR UniProtKB/TrEMBL
  SPRY2_RyR UniProtKB/TrEMBL
  SPRY3_RyR UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
NCBI Gene Ryr2 ENTREZGENE
PANTHER B30.2/SPRY DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  RYANODINE RECEPTOR 2 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  Ins145_P3_rec UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
  RIH_assoc UniProtKB/TrEMBL
  RR_TM4-6 UniProtKB/TrEMBL
  RYDR_ITPR UniProtKB/TrEMBL
  RYDR_Jsol UniProtKB/TrEMBL
  RyR UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS RYANODINER UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF100909 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF82109 UniProtKB/TrEMBL
UniProt A0A287CRX0_ICTTR UniProtKB/TrEMBL
  I3MNG3 ENTREZGENE, UniProtKB/TrEMBL