Kcnc1 (potassium voltage-gated channel subfamily C member 1) - Rat Genome Database

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Gene: Kcnc1 (potassium voltage-gated channel subfamily C member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Kcnc1
Name: potassium voltage-gated channel subfamily C member 1
RGD ID: 12691441
Description: ENCODES a protein that exhibits voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); cerebellum development (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN calyx of Held (ortholog); cell surface (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, Shaw-related subfamily, member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494745,317,707 - 45,359,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365281,351,689 - 1,393,932 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365281,351,687 - 1,393,926 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494745,317,707 - 45,359,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365281,351,689 - 1,393,932 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365281,351,687 - 1,393,926 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,734,781 - 17,783,057 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,734,774 - 17,856,804 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,756,328 - 17,804,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,714,090 - 17,750,755 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,714,112 - 17,750,753NCBI
Celera1117,890,030 - 17,937,113 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1117,441,501 - 17,487,861 (+)NCBIHuRef
CHM1_11117,757,215 - 17,804,314 (+)NCBICHM1_1
T2T-CHM13v2.01117,832,488 - 17,880,755 (+)NCBIT2T-CHM13v2.0
Kcnc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,045,643 - 46,088,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl746,045,921 - 46,088,128 (+)EnsemblGRCm39 Ensembl
GRCm38746,396,219 - 46,438,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,396,497 - 46,438,704 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,651,838 - 53,694,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36746,265,584 - 46,306,746 (+)NCBIMGSCv36mm8
Celera741,870,004 - 41,912,217 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.1NCBI
Kcnc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81106,039,247 - 106,081,034 (+)NCBIGRCr8
mRatBN7.2196,902,953 - 96,944,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,902,953 - 96,944,744 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1102,288,979 - 102,330,759 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01110,760,963 - 110,802,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01104,051,340 - 104,093,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01102,414,352 - 102,456,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1102,414,625 - 102,456,411 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01103,499,689 - 103,541,476 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,928,275 - 96,970,062 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1197,006,385 - 97,048,173 (+)NCBI
Celera191,151,218 - 91,193,065 (+)NCBICelera
Cytogenetic Map1q22NCBI
Kcnc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541432,538,938 - 32,580,370 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541432,538,968 - 32,580,370 (+)NCBIChiLan1.0ChiLan1.0
KCNC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2920,067,013 - 20,194,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11120,027,491 - 20,149,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,788,010 - 17,936,591 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,472,061 - 17,519,214 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,472,158 - 17,517,892 (+)Ensemblpanpan1.1panPan2
KCNC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12140,273,366 - 40,315,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2140,273,827 - 40,315,189 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2139,773,451 - 39,814,777 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02141,377,580 - 41,419,665 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2141,378,304 - 41,419,665 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12140,391,108 - 40,432,406 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02140,598,959 - 40,640,287 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02140,937,508 - 40,978,698 (+)NCBIUU_Cfam_GSD_1.0
KCNC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl241,362,347 - 41,408,127 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1241,362,208 - 41,407,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2244,432,251 - 44,438,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,189,485 - 47,237,093 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl147,190,806 - 47,236,775 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038144,582,522 - 144,631,080 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247669,359,511 - 9,400,106 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247669,360,038 - 9,400,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029925   ⟹   ENSSTOP00000022131
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365281,351,689 - 1,393,932 (-)Ensembl
RefSeq Acc Id: XM_005326753   ⟹   XP_005326810
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494745,317,707 - 45,359,952 (-)NCBI
SpeTri2.0NW_0049365281,351,687 - 1,393,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284660   ⟹   XP_040140594
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494745,317,711 - 45,329,280 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005326810 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022131.2
GenBank Protein KAG3285641 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326810   ⟸   XM_005326753
- Peptide Label: isoform X1
- UniProtKB: I3NCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140594   ⟸   XM_040284660
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000022131   ⟸   ENSSTOT00000029925
Protein Domains
Ion transport   Potassium channel tetramerisation-type BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019519 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029925.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv3 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv3.1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Kcnc1 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY C MEMBER 1 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV31CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
  SHAWCHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt I3NCN4 ENTREZGENE, UniProtKB/TrEMBL