Nfkbib (NFKB inhibitor beta) - Rat Genome Database

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Gene: Nfkbib (NFKB inhibitor beta) Ictidomys tridecemlineatus
Analyze
Symbol: Nfkbib
Name: NFKB inhibitor beta
RGD ID: 12690633
Description: INVOLVED IN cellular response to lipopolysaccharide (ortholog); cytoplasmic sequestering of NF-kappaB (ortholog); inflammatory response (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; ASSOCIATED WITH genetic disease (ortholog); maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NF-kappa-B inhibitor beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,422,102 - 13,429,688 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,850,058 - 1,862,035 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,850,185 - 1,857,757 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nfkbib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,422,102 - 13,429,688 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,850,058 - 1,862,035 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,850,185 - 1,857,757 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFKBIB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,899,666 - 38,908,889 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,899,700 - 38,908,893 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,390,306 - 39,399,529 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,082,455 - 44,091,374 (+)NCBINCBI36Build 36hg18NCBI36
Build 341944,082,454 - 44,091,373NCBI
Celera1936,193,052 - 36,201,968 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,837,132 - 35,846,241 (+)NCBIHuRef
CHM1_11939,390,808 - 39,399,934 (+)NCBICHM1_1
T2T-CHM13v2.01941,703,721 - 41,712,860 (+)NCBIT2T-CHM13v2.0
Nfkbib
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,457,676 - 28,466,069 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,457,676 - 28,466,937 (-)EnsemblGRCm39 Ensembl
GRCm38728,758,251 - 28,766,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,758,251 - 28,767,512 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,543,270 - 29,551,543 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,467,011 - 28,475,284 (-)NCBIMGSCv36mm8
Celera723,319,046 - 23,327,301 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.91NCBI
Nfkbib
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,173,817 - 93,181,387 (-)NCBIGRCr8
mRatBN7.2184,046,292 - 84,053,862 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,046,295 - 84,053,862 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,456,147 - 89,463,702 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,915,267 - 97,922,812 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,212,004 - 91,219,559 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,941,073 - 86,948,845 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,941,074 - 86,948,845 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,122,205 - 88,129,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,865,440 - 83,873,010 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,943,551 - 83,951,121 (-)NCBI
Celera178,438,451 - 78,446,021 (-)NCBICelera
Cytogenetic Map1q21NCBI
Nfkbib
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468617,078 - 626,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468617,078 - 626,151 (-)NCBIChiLan1.0ChiLan1.0
NFKBIB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,202,707 - 45,212,748 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,073,324 - 47,083,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,005,797 - 36,015,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,554,486 - 44,565,128 (+)NCBIpanpan1.1PanPan1.1panPan2
NFKBIB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,206,537 - 114,217,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,206,534 - 114,217,644 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,608,175 - 113,618,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,806,385 - 114,817,213 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,806,387 - 114,817,162 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,364,149 - 114,374,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,997,319 - 114,008,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,993,059 - 115,003,891 (-)NCBIUU_Cfam_GSD_1.0
NFKBIB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,703,647 - 47,712,654 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,703,644 - 47,712,661 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,241,118 - 43,250,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NFKBIB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,518,909 - 33,529,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,518,963 - 33,529,891 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,540,577 - 11,552,485 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfkbib
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,259,577 - 12,266,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,259,567 - 12,266,642 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000019974   ⟹   ENSSTOP00000018603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366611,850,058 - 1,862,035 (+)Ensembl
RefSeq Acc Id: XM_005336401   ⟹   XP_005336458
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934913,422,102 - 13,429,688 (+)NCBI
SpeTri2.0NW_0049366611,850,185 - 1,857,757 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018603.1
GenBank Protein KAG3256001 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005336458   ⟸   XM_005336401
- UniProtKB: I3N2K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018603   ⟸   ENSSTOT00000019974


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005642 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019974.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Nfkbib ENTREZGENE
PANTHER NF-KAPPA-B INHIBITOR BETA UniProtKB/TrEMBL
  PTHR47303 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3N2K7 ENTREZGENE, UniProtKB/TrEMBL