Ptgfr (prostaglandin F receptor) - Rat Genome Database

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Gene: Ptgfr (prostaglandin F receptor) Ictidomys tridecemlineatus
Analyze
Symbol: Ptgfr
Name: prostaglandin F receptor
RGD ID: 12690044
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); prostaglandin F receptor activity (inferred); INVOLVED IN negative regulation of apoptotic process (ortholog); response to lipopolysaccharide (ortholog); ASSOCIATED WITH Airway Obstruction (ortholog); endometriosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prostaglandin F2-alpha receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,724,967 - 89,764,078 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365715,235,687 - 5,274,432 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365715,235,678 - 5,274,417 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ptgfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,724,967 - 89,764,078 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365715,235,687 - 5,274,432 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365715,235,678 - 5,274,417 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,490,974 - 78,540,701 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,303,884 - 78,540,701 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,956,659 - 79,006,386 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,729,316 - 78,778,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,668,748 - 78,716,495NCBI
Celera177,196,263 - 77,245,909 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef177,088,559 - 77,137,983 (+)NCBIHuRef
CHM1_1179,073,150 - 79,122,783 (+)NCBICHM1_1
T2T-CHM13v2.0178,329,334 - 78,379,549 (+)NCBIT2T-CHM13v2.0
Ptgfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,504,247 - 151,543,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,502,139 - 151,543,267 (-)EnsemblGRCm39 Ensembl
GRCm383151,798,610 - 151,837,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3151,796,502 - 151,837,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv373151,461,574 - 151,500,492 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363151,737,371 - 151,774,818 (-)NCBIMGSCv36mm8
Celera3158,277,266 - 158,316,906 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map376.96NCBI
Ptgfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,390,820 - 243,426,647 (-)NCBIGRCr8
mRatBN7.22240,731,185 - 240,766,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2240,733,375 - 240,765,650 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,532,501 - 248,564,762 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,419,523 - 246,451,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,298,586 - 241,330,952 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,005,813 - 257,039,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,005,829 - 257,038,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02275,684,139 - 275,717,230 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2232,669,635 - 232,701,826 (-)NCBICelera
RH 3.4 Map21652.91RGD
Cytogenetic Map2q45NCBI
Ptgfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542314,768,180 - 14,815,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542314,768,208 - 14,816,462 (-)NCBIChiLan1.0ChiLan1.0
PTGFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,345,010 - 148,397,695 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11147,500,518 - 147,550,952 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,714,164 - 77,762,171 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,794,831 - 79,841,467 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,794,831 - 79,841,467 (+)Ensemblpanpan1.1panPan2
PTGFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,460,107 - 68,498,793 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,460,107 - 68,499,789 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,118,473 - 71,157,160 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,042,081 - 69,085,711 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,042,099 - 69,085,710 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,552,458 - 68,591,140 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,497,489 - 68,536,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0668,982,324 - 69,021,011 (-)NCBIUU_Cfam_GSD_1.0
PTGFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6134,727,343 - 134,777,072 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16134,727,334 - 134,777,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26124,884,700 - 124,933,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q31-q32NCBI
PTGFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12054,660,329 - 54,706,212 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2054,659,197 - 54,704,452 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,818,688 - 62,866,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptgfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474218,723,458 - 18,768,083 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474218,723,558 - 19,031,578 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000001206   ⟹   ENSSTOP00000001079
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365715,235,687 - 5,274,432 (+)Ensembl
RefSeq Acc Id: XM_005330708   ⟹   XP_005330765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505889,724,967 - 89,764,078 (+)NCBI
SpeTri2.0NW_0049365715,235,678 - 5,274,417 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288911   ⟹   XP_040144845
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505889,726,028 - 89,764,078 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005330765 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001079.2
GenBank Protein KAG3283438 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005330765   ⟸   XM_005330708
- UniProtKB: I3LY60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144845   ⟸   XM_040288911
- UniProtKB: I3LY60 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000001079   ⟸   ENSSTOT00000001206
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001209 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001206.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  PglndnF_rcpt UniProtKB/TrEMBL
  Prostanoid_rcpt UniProtKB/TrEMBL
NCBI Gene Ptgfr ENTREZGENE
PANTHER PTHR11866 UniProtKB/TrEMBL
  PTHR11866:SF4 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  PROSTANOIDR UniProtKB/TrEMBL
  PRSTNOIDFPR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3LY60 ENTREZGENE, UniProtKB/TrEMBL