Gnb1 (G protein subunit beta 1) - Rat Genome Database

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Gene: Gnb1 (G protein subunit beta 1) Ictidomys tridecemlineatus
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Symbol: Gnb1
Name: G protein subunit beta 1
RGD ID: 12689709
Description: ENCODES a protein that exhibits alkylglycerophosphoethanolamine phosphodiesterase activity (ortholog); spectrin binding (ortholog); INVOLVED IN cardiac muscle cell apoptotic process (ortholog); cell population proliferation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN adenosine signaling pathway; dopamine signaling pathway via D1 family of receptors; eicosanoid signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); anxiety disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN cell body (ortholog); dendrite (ortholog); heterotrimeric G-protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein subunit beta 1, transcript variant X1; G protein subunit beta 1, transcript variant X2; G protein subunit beta 1, transcript variant X3; G protein subunit beta 1, transcript variant X4; G protein subunit beta 1, transcript variant X5; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,524,325 - 1,555,102 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,518,855 - 1,554,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,524,325 - 1,555,102 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,518,855 - 1,554,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,785,286 - 1,891,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,785,285 - 1,892,292 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,716,725 - 1,822,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,706,589 - 1,812,355 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,748,891 - 1,854,657NCBI
Celera1824,442 - 878,396 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1993,370 - 1,099,481 (-)NCBIHuRef
CHM1_111,703,768 - 1,809,545 (-)NCBICHM1_1
T2T-CHM13v2.011,219,664 - 1,325,475 (-)NCBIT2T-CHM13v2.0
Gnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,575,514 - 155,643,726 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,575,818 - 155,643,726 (+)EnsemblGRCm39 Ensembl
GRCm384155,491,300 - 155,559,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,491,361 - 155,559,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,865,470 - 154,933,378 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,335,170 - 154,401,618 (+)NCBIMGSCv36mm8
Celera4157,766,104 - 157,834,163 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Gnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,357,778 - 171,424,489 (+)NCBIGRCr8
mRatBN7.25166,075,508 - 166,142,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,075,629 - 166,142,124 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5168,801,104 - 168,845,812 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,622,525 - 170,667,219 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,585,062 - 170,629,767 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,914,025 - 172,981,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,934,990 - 172,979,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,388,373 - 176,456,527 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,341,135 - 172,386,772 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,366,363 - 172,398,680 (+)NCBI
Celera5164,297,726 - 164,342,470 (+)NCBICelera
Cytogenetic Map5q36NCBI
Gnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,165,850 - 9,193,066 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,165,850 - 9,192,306 (+)NCBIChiLan1.0ChiLan1.0
GNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,384,861 - 226,491,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,040,769 - 225,147,102 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01490,415 - 596,826 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,647,764 - 1,753,106 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,647,340 - 1,701,614 (-)Ensemblpanpan1.1panPan2
GNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,777,854 - 56,879,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,779,354 - 56,817,295 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,854,797 - 56,892,482 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,979,770 - 57,081,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,979,770 - 57,081,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,971,985 - 57,009,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,864,386 - 56,902,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,254,317 - 57,292,011 (-)NCBIUU_Cfam_GSD_1.0
GNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,867,158 - 63,952,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,867,155 - 63,957,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,654,890 - 129,765,765 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,707,085 - 129,766,667 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,071,639 - 34,168,179 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,936,932 - 8,003,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,937,061 - 8,002,798 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010523   ⟹   ENSSTOP00000009443
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367371,524,325 - 1,555,102 (+)Ensembl
RefSeq Acc Id: XM_005339235   ⟹   XP_005339292
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,947,095 (-)NCBI
SpeTri2.0NW_0049367371,518,855 - 1,554,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287769   ⟹   XP_040143703
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBI
RefSeq Acc Id: XM_040287770   ⟹   XP_040143704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,947,093 (-)NCBI
RefSeq Acc Id: XM_040287771   ⟹   XP_040143705
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBI
RefSeq Acc Id: XM_040287772   ⟹   XP_040143706
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBI
RefSeq Acc Id: XM_040287773   ⟹   XP_040143707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,911,024 - 27,981,551 (-)NCBI
RefSeq Acc Id: XP_005339292   ⟸   XM_005339235
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143706   ⟸   XM_040287772
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143703   ⟸   XM_040287769
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143705   ⟸   XM_040287771
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143707   ⟸   XM_040287773
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143704   ⟸   XM_040287770
- UniProtKB: I3MFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000009443   ⟸   ENSSTOT00000010523


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010522 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010523.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Gprotein_B UniProtKB/TrEMBL
  Guanine_nucleotide-bd_bsu UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Gnb1 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-1 UniProtKB/TrEMBL
  PTHR19850 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PIRSF GN-bd_beta UniProtKB/TrEMBL
PRINTS GPROTEINB UniProtKB/TrEMBL
  GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt I3MFN1 ENTREZGENE, UniProtKB/TrEMBL