Colec11 (collectin subfamily member 11) - Rat Genome Database

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Gene: Colec11 (collectin subfamily member 11) Ictidomys tridecemlineatus
Analyze
Symbol: Colec11
Name: collectin subfamily member 11
RGD ID: 12688315
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent carbohydrate binding (inferred); carbohydrate binding (inferred); INVOLVED IN antimicrobial humoral response (inferred); complement activation (inferred); complement activation, lectin pathway (inferred); ASSOCIATED WITH 3MC syndrome 1 (ortholog); 3MC syndrome 2 (ortholog); 3MC syndrome 3 (ortholog); FOUND IN collagen trimer (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collectin subfamily member 11, transcript variant X1; collectin subfamily member 11, transcript variant X2; collectin-11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629246,990,032 - 47,021,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365321,749,894 - 1,776,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365321,757,288 - 1,776,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Colec11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629246,990,032 - 47,021,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365321,749,894 - 1,776,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365321,757,288 - 1,776,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COLEC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3823,595,112 - 3,644,644 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl23,594,832 - 3,644,644 (+)EnsemblGRCh38hg38GRCh38
GRCh3723,642,702 - 3,692,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,620,512 - 3,669,923 (+)NCBINCBI36Build 36hg18NCBI36
Celera23,651,684 - 3,701,058 (+)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef23,583,377 - 3,633,434 (+)NCBIHuRef
CHM1_123,572,445 - 3,622,009 (+)NCBICHM1_1
T2T-CHM13v2.023,617,856 - 3,667,536 (+)NCBIT2T-CHM13v2.0
Colec11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,644,171 - 28,673,458 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1228,644,172 - 28,673,376 (-)EnsemblGRCm39 Ensembl
GRCm381228,594,172 - 28,623,458 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,594,173 - 28,623,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371229,279,038 - 29,308,155 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361229,180,434 - 29,209,598 (-)NCBIMGSCv36mm8
Celera1230,083,905 - 30,113,491 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1210.98NCBI
Colec11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,952,357 - 50,984,845 (-)NCBIGRCr8
mRatBN7.2645,223,974 - 45,256,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,223,980 - 45,271,145 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0647,857,767 - 47,889,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,857,771 - 47,890,033 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,559,693 - 56,591,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,466,449 - 46,504,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1646,469,581 - 46,507,886 (-)NCBI
Celera644,448,098 - 44,479,912 (-)NCBICelera
Cytogenetic Map6q16NCBI
Colec11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,778,858 - 3,790,080 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554873,778,901 - 3,789,852 (-)NCBIChiLan1.0ChiLan1.0
COLEC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212122,861,196 - 122,918,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A122,865,173 - 122,914,509 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A3,610,679 - 3,659,739 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A3,529,358 - 3,578,280 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A3,529,358 - 3,579,517 (+)Ensemblpanpan1.1panPan2
COLEC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1172,147,679 - 2,180,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl172,147,882 - 2,180,098 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,133,539 - 2,166,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0172,241,620 - 2,274,913 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl172,241,626 - 2,274,915 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1172,126,828 - 2,159,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0172,147,641 - 2,180,805 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0172,149,477 - 2,182,824 (+)NCBIUU_Cfam_GSD_1.0
COLEC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,226,956 - 131,254,553 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13131,226,941 - 131,254,555 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,525,802 - 140,553,408 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COLEC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114104,002,207 - 104,057,372 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14104,002,211 - 104,057,174 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660458,241,946 - 8,292,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Colec11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248465,173,292 - 5,182,471 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248465,173,292 - 5,185,036 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000019365   ⟹   ENSSTOP00000019053
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365321,749,894 - 1,776,001 (+)Ensembl
RefSeq Acc Id: XM_040271204   ⟹   XP_040127138
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629246,990,032 - 47,021,007 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040127138 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019053.1
GenBank Protein KAG3267527 (Get FASTA)   NCBI Sequence Viewer  
  KAG3267528 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040127138   ⟸   XM_040271204
- UniProtKB: I3N3V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000019053   ⟸   ENSSTOT00000019365
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020387 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019365.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Collectin_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene Colec11 ENTREZGENE
PANTHER COLLECTIN SUBFAMILY MEMBER 11 UniProtKB/TrEMBL
  LITHOSTATHINE UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt I3N3V7 ENTREZGENE, UniProtKB/TrEMBL