Akap13 (A-kinase anchoring protein 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Akap13 (A-kinase anchoring protein 13) Ictidomys tridecemlineatus
Analyze
Symbol: Akap13
Name: A-kinase anchoring protein 13
RGD ID: 12687315
Description: ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein kinase A binding (ortholog); small GTPase binding (ortholog); INVOLVED IN adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process (ortholog); bone development (ortholog); cardiac muscle cell differentiation (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Esophageal Neoplasms (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cortical actin cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A-kinase anchor protein 13; A-kinase anchoring protein 13, transcript variant X1; A-kinase anchoring protein 13, transcript variant X2; A-kinase anchoring protein 13, transcript variant X3; A-kinase anchoring protein 13, transcript variant X4; A-kinase anchoring protein 13, transcript variant X5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640134,357,191 - 134,672,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648311,661,862 - 11,977,292 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Akap13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640134,357,191 - 134,672,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648311,661,862 - 11,977,292 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381585,380,603 - 85,749,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1585,380,571 - 85,749,358 (+)EnsemblGRCh38hg38GRCh38
GRCh371585,923,834 - 86,292,589 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361583,724,875 - 84,093,590 (+)NCBINCBI36Build 36hg18NCBI36
Build 341584,021,271 - 84,093,590NCBI
Celera1562,323,846 - 62,692,414 (+)NCBICelera
Cytogenetic Map15q25.3NCBI
HuRef1561,986,401 - 62,354,887 (+)NCBIHuRef
CHM1_11585,765,298 - 86,134,016 (+)NCBICHM1_1
T2T-CHM13v2.01583,132,647 - 83,501,376 (+)NCBIT2T-CHM13v2.0
Akap13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39775,105,271 - 75,404,357 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl775,105,282 - 75,404,357 (+)EnsemblGRCm39 Ensembl
GRCm38775,455,526 - 75,754,609 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl775,455,534 - 75,754,609 (+)EnsemblGRCm38mm10GRCm38
MGSCv37782,600,420 - 82,899,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36775,328,812 - 75,628,122 (+)NCBIMGSCv36mm8
Celera772,913,871 - 73,205,960 (+)NCBICelera
Cytogenetic Map7D1NCBI
cM Map743.76NCBI
Akap13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81138,722,445 - 139,029,401 (+)NCBIGRCr8
mRatBN7.21129,313,183 - 129,619,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1129,314,402 - 129,619,646 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1137,232,876 - 137,538,333 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01144,403,105 - 144,708,592 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01137,289,702 - 137,597,080 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01137,089,558 - 137,315,272 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1137,014,272 - 137,315,272 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,007,112 - 138,312,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,052,674 - 131,360,512 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,302,912 - 131,380,987 (+)NCBI
Celera1121,422,303 - 121,727,463 (+)NCBICelera
Cytogenetic Map1q31NCBI
Akap13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541619,009,485 - 19,247,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541619,006,206 - 19,327,523 (-)NCBIChiLan1.0ChiLan1.0
AKAP13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21674,930,726 - 75,292,650 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11578,635,626 - 78,997,324 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01564,076,422 - 64,438,109 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11583,289,867 - 83,651,362 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1583,387,667 - 83,651,362 (+)Ensemblpanpan1.1panPan2
AKAP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1349,076,313 - 49,310,564 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl349,076,642 - 49,308,221 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha351,631,494 - 51,952,108 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0349,413,000 - 49,733,699 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl349,412,925 - 49,729,970 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1348,911,383 - 49,227,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0349,139,636 - 49,460,216 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0349,485,435 - 49,806,458 (+)NCBIUU_Cfam_GSD_1.0
AKAP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1787,889,384 - 88,222,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2794,486,955 - 94,583,014 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AKAP13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1294,009,921 - 4,364,226 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl294,106,732 - 4,359,516 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605942,653,071 - 43,006,115 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Akap13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476812,765,723 - 13,095,136 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476812,767,120 - 13,099,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021722880   ⟹   XP_021578555
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,357,191 - 134,672,629 (-)NCBI
SpeTri2.0NW_00493648311,661,862 - 11,977,292 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722881   ⟹   XP_021578556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
SpeTri2.0NW_00493648311,661,862 - 11,972,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722882   ⟹   XP_021578557
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
SpeTri2.0NW_00493648311,661,862 - 11,972,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722883   ⟹   XP_021578558
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
SpeTri2.0NW_00493648311,661,862 - 11,972,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722884   ⟹   XP_021578559
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,473,324 (-)NCBI
SpeTri2.0NW_00493648311,861,188 - 11,972,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275947   ⟹   XP_040131881
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
RefSeq Acc Id: XM_040275948   ⟹   XP_040131882
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,357,191 - 134,672,629 (-)NCBI
RefSeq Acc Id: XM_040275949   ⟹   XP_040131883
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
RefSeq Acc Id: XM_040275950   ⟹   XP_040131884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
RefSeq Acc Id: XM_040275951   ⟹   XP_040131885
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
RefSeq Acc Id: XM_040275952   ⟹   XP_040131886
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640134,361,720 - 134,672,629 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021578555   ⟸   XM_021722880
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021578556   ⟸   XM_021722881
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_021578558   ⟸   XM_021722883
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_021578557   ⟸   XM_021722882
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_021578559   ⟸   XM_021722884
- Peptide Label: isoform X11
- UniProtKB: I3N2H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131882   ⟸   XM_040275948
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040131886   ⟸   XM_040275952
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040131884   ⟸   XM_040275950
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040131885   ⟸   XM_040275951
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040131883   ⟸   XM_040275949
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040131881   ⟸   XM_040275947
- Peptide Label: isoform X2
Protein Domains
DH   PH   Phorbol-ester/DAG-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020484 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025325.2 UniProtKB/TrEMBL
  ENSSTOT00000034436.1 UniProtKB/TrEMBL
  ENSSTOT00000036549.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_16 UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Akap13 ENTREZGENE
PANTHER AGAP007712-PA UniProtKB/TrEMBL
  PTHR13944:SF18 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  PH_16 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A287D5I3_ICTTR UniProtKB/TrEMBL
  A0A287D7S8_ICTTR UniProtKB/TrEMBL
  I3N2H2 ENTREZGENE, UniProtKB/TrEMBL