Pjvk (pejvakin) - Rat Genome Database

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Gene: Pjvk (pejvakin) Ictidomys tridecemlineatus
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Symbol: Pjvk
Name: pejvakin
RGD ID: 12686497
Description: INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); sensory perception of sound (ortholog); stereocilium maintenance (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 59 (ortholog); Deafness (ortholog); FOUND IN ciliary rootlet (inferred); cortical actin cytoskeleton (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deafness, autosomal recessive 59; Dfnb59
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,115,170 - 139,124,763 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365097,670,325 - 7,677,581 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365097,670,557 - 7,677,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pjvk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,115,170 - 139,124,763 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365097,670,325 - 7,677,581 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365097,670,557 - 7,677,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PJVK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,451,378 - 178,462,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,451,346 - 178,462,102 (+)EnsemblGRCh38hg38GRCh38
GRCh372179,316,105 - 179,326,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362179,026,351 - 179,034,310 (+)NCBINCBI36Build 36hg18NCBI36
Celera2172,919,049 - 172,928,999 (+)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2171,186,847 - 171,196,797 (+)NCBIHuRef
CHM1_12179,322,170 - 179,332,144 (+)NCBICHM1_1
T2T-CHM13v2.02178,934,171 - 178,944,894 (+)NCBIT2T-CHM13v2.0
Pjvk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39276,480,617 - 76,488,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl276,478,820 - 76,488,900 (+)EnsemblGRCm39 Ensembl
GRCm38276,650,273 - 76,658,554 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl276,648,476 - 76,658,556 (+)EnsemblGRCm38mm10GRCm38
MGSCv37276,488,330 - 76,496,613 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36276,449,338 - 76,459,395 (+)NCBIMGSCv36mm8
Celera278,311,949 - 78,320,233 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.08NCBI
Pjvk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,002,106 - 82,012,273 (+)NCBIGRCr8
mRatBN7.2361,594,644 - 61,605,051 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,596,641 - 61,605,045 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0363,508,386 - 63,518,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,510,293 - 63,518,147 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0370,083,296 - 70,091,353 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4359,348,728 - 59,356,706 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera361,080,528 - 61,090,733 (+)NCBICelera
Cytogenetic Map3q24NCBI
Pjvk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540318,386,705 - 18,393,771 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540318,386,705 - 18,393,771 (-)NCBIChiLan1.0ChiLan1.0
PJVK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21381,098,713 - 81,111,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B81,113,687 - 81,124,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B65,708,635 - 65,725,766 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B183,413,375 - 183,423,503 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B183,413,265 - 183,423,224 (+)Ensemblpanpan1.1panPan2
PJVK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13622,080,574 - 22,087,537 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3622,040,303 - 22,092,249 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3622,099,201 - 22,106,550 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03622,224,490 - 22,231,855 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3622,183,736 - 22,231,259 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,333,855 - 22,341,196 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03622,296,525 - 22,303,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,412,988 - 22,420,325 (+)NCBIUU_Cfam_GSD_1.0
PJVK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1584,158,639 - 84,165,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11584,157,864 - 84,165,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21593,691,740 - 93,699,282 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PJVK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11064,004,113 - 64,013,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1064,005,259 - 64,014,571 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040135,561,744 - 135,613,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pjvk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624844426,636 - 433,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624844424,903 - 432,841 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000025437   ⟹   ENSSTOP00000017152
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365097,670,325 - 7,677,581 (+)Ensembl
RefSeq Acc Id: XM_005324655   ⟹   XP_005324712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,116,570 - 139,124,763 (+)NCBI
SpeTri2.0NW_0049365097,670,557 - 7,677,480 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725953   ⟹   XP_021581628
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,115,222 - 139,124,763 (+)NCBI
SpeTri2.0NW_0049365097,670,557 - 7,677,480 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040294531   ⟹   XP_040150465
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,115,222 - 139,124,763 (+)NCBI
RefSeq Acc Id: XM_040294532   ⟹   XP_040150466
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,116,570 - 139,124,763 (+)NCBI
RefSeq Acc Id: XM_040294533   ⟹   XP_040150467
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,116,570 - 139,124,763 (+)NCBI
RefSeq Acc Id: XM_040294534   ⟹   XP_040150468
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,115,223 - 139,124,763 (+)NCBI
RefSeq Acc Id: XM_040294535   ⟹   XP_040150469
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,115,223 - 139,124,763 (+)NCBI
RefSeq Acc Id: XM_040294536   ⟹   XP_040150470
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303139,115,170 - 139,124,763 (+)NCBI
RefSeq Acc Id: XP_005324712   ⟸   XM_005324655
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021581628   ⟸   XM_021725953
- Peptide Label: isoform X2
- UniProtKB: I3MYF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150470   ⟸   XM_040294536
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150465   ⟸   XM_040294531
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040150468   ⟸   XM_040294534
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150469   ⟸   XM_040294535
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150466   ⟸   XM_040294532
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040150467   ⟸   XM_040294533
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000017152   ⟸   ENSSTOT00000025437
Protein Domains
Gasdermin pore forming


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028411 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025437.2 UniProtKB/TrEMBL
InterPro Gasdermin_pore UniProtKB/TrEMBL
  GSDME UniProtKB/TrEMBL
NCBI Gene Dfnb59 ENTREZGENE
PANTHER GASDERMIN-E UniProtKB/TrEMBL
  NONSYNDROMIC HEARING IMPAIRMENT PROTEIN UniProtKB/TrEMBL
Pfam Gasdermin UniProtKB/TrEMBL
UniProt I3MYF6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Pjvk  pejvakin  Dfnb59  deafness, autosomal recessive 59  Symbol and/or name change 5135510 APPROVED