Aimp1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1) - Rat Genome Database

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Gene: Aimp1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Aimp1
Name: aminoacyl tRNA synthetase complex interacting multifunctional protein 1
RGD ID: 12685066
Description: ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); defense response to virus (ortholog); positive regulation of glucagon secretion (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 3 (ortholog); Muscle Hypotonia (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: aminoacyl tRNA synthase complex-interacting multifunctional protein 1; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X1; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X2; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X3; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X4; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X5; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X6; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X7; aminoacyl tRNA synthetase complex interacting multifunctional protein 1, transcript variant X8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,082,808 - 14,119,926 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936814798,948 - 837,334 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Aimp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,082,808 - 14,119,926 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936814798,948 - 837,334 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384106,315,544 - 106,349,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4106,315,544 - 106,349,456 (+)EnsemblGRCh38hg38GRCh38
GRCh374107,236,701 - 107,270,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364107,457,124 - 107,489,021 (+)NCBINCBI36Build 36hg18NCBI36
Build 344107,595,278 - 107,627,176NCBI
Celera4104,536,003 - 104,569,617 (+)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4102,971,448 - 103,005,063 (+)NCBIHuRef
CHM1_14107,213,718 - 107,247,313 (+)NCBICHM1_1
T2T-CHM13v2.04109,626,616 - 109,660,528 (+)NCBIT2T-CHM13v2.0
Aimp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,366,259 - 132,390,151 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3132,366,242 - 132,390,131 (-)EnsemblGRCm39 Ensembl
GRCm383132,660,498 - 132,684,390 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3132,660,481 - 132,684,370 (-)EnsemblGRCm38mm10GRCm38
MGSCv373132,323,462 - 132,346,843 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363132,597,809 - 132,621,136 (-)NCBIMGSCv36mm8
Celera3139,089,155 - 139,112,528 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map361.48NCBI
Aimp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82223,825,930 - 223,849,477 (-)NCBIGRCr8
mRatBN7.22221,151,907 - 221,175,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,151,904 - 221,175,728 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2228,811,082 - 228,834,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02226,710,760 - 226,734,165 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02221,568,416 - 221,591,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02237,727,782 - 237,751,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2237,727,764 - 237,751,378 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,268,301 - 256,291,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,142,679 - 230,166,226 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12230,137,339 - 230,140,141 (-)NCBI
Celera2213,387,972 - 213,411,498 (-)NCBICelera
Cytogenetic Map2q43NCBI
Aimp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,072,341 - 3,108,672 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,073,480 - 3,108,012 (-)NCBIChiLan1.0ChiLan1.0
AIMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23104,413,891 - 104,446,165 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14104,709,130 - 104,742,902 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,796,320 - 98,830,095 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14109,403,236 - 109,436,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4109,404,352 - 109,436,566 (+)Ensemblpanpan1.1panPan2
AIMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13227,062,812 - 27,102,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3227,062,950 - 27,101,977 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3214,924,177 - 14,964,013 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03227,294,550 - 27,334,400 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3227,294,673 - 27,334,401 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13227,288,505 - 27,328,329 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03227,034,148 - 27,073,927 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03212,786,600 - 12,826,428 (-)NCBIUU_Cfam_GSD_1.0
AIMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8115,432,088 - 115,476,704 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,437,453 - 115,476,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28123,840,344 - 123,893,742 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AIMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1754,308,865 - 54,340,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603732,942,446 - 32,974,714 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aimp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248302,624,310 - 2,649,099 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248302,624,071 - 2,649,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008182   ⟹   ENSSTOP00000007327
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936814800,155 - 828,523 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034722   ⟹   ENSSTOP00000032643
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936814798,948 - 837,334 (-)Ensembl
RefSeq Acc Id: XM_005340715   ⟹   XP_005340772
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,910 (-)NCBI
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365392   ⟹   XP_013220846
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,926 (-)NCBI
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365393   ⟹   XP_013220847
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,791 (-)NCBI
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365395   ⟹   XP_013220849
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,905 (-)NCBI
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365396   ⟹   XP_013220850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,871 (-)NCBI
SpeTri2.0NW_004936814800,085 - 837,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293011   ⟹   XP_040148945
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,808 - 14,119,763 (-)NCBI
RefSeq Acc Id: XM_040293012   ⟹   XP_040148946
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,082,829 - 14,119,763 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013220850   ⟸   XM_013365396
- Peptide Label: isoform X3
- UniProtKB: A0A287DGG6 (UniProtKB/TrEMBL),   I3MB63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220849   ⟸   XM_013365395
- Peptide Label: isoform X3
- UniProtKB: A0A287DGG6 (UniProtKB/TrEMBL),   I3MB63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220847   ⟸   XM_013365393
- Peptide Label: isoform X3
- UniProtKB: A0A287DGG6 (UniProtKB/TrEMBL),   I3MB63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220846   ⟸   XM_013365392
- Peptide Label: isoform X2
- UniProtKB: I3MB63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340772   ⟸   XM_005340715
- Peptide Label: isoform X2
- UniProtKB: I3MB63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040148945   ⟸   XM_040293011
- Peptide Label: isoform X1
- UniProtKB: I3MB63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040148946   ⟸   XM_040293012
- Peptide Label: isoform X2
- UniProtKB: I3MB63 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007327   ⟸   ENSSTOT00000008182
RefSeq Acc Id: ENSSTOP00000032643   ⟸   ENSSTOT00000034722
Protein Domains
tRNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008178 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008182.3 UniProtKB/TrEMBL
  ENSSTOT00000034722.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  tRNA-bd_dom UniProtKB/TrEMBL
NCBI Gene Aimp1 ENTREZGENE
PANTHER AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN 1 UniProtKB/TrEMBL
  TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER UniProtKB/TrEMBL
Pfam tRNA_bind UniProtKB/TrEMBL
PROSITE TRBD UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt A0A287DGG6 ENTREZGENE, UniProtKB/TrEMBL
  I3MB63 ENTREZGENE, UniProtKB/TrEMBL